Rui Ponte Costa, PhD - Related publications

2010-2014 Institute for Adaptive and Neural Computation University of Edinburgh, Edinburgh, Scotland, United Kingdom 
 2014-2018 Centre for Neural Circuits and Behaviour University of Oxford, Oxford, United Kingdom 
 2017- Department of Physiology University of Bern, Bern, Bern, Switzerland 
 2018- Computer Science, Faculty of Engineering University of Bristol, Bristol, England, United Kingdom 
Computational Neuroscience, Synaptic Plasticity, Cortical Networks, Machine Learning
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Andoh M, Koyama R. Microglia regulate synaptic development and plasticity. Developmental Neurobiology. PMID 33583110 DOI: 10.1002/dneu.22814   
2021 Harrell ER, Pimentel D, Miesenböck G. Changes in presynaptic gene expression during homeostatic compensation at a central synapse. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 33608385 DOI: 10.1523/JNEUROSCI.2979-20.2021   
2021 Sidisky JM, Weaver D, Hussain S, Okumus M, Caratenuto R, Babcock D. sustains trans-synaptic BMP signaling required for synaptic maintenance with age. Elife. 10. PMID 33667157 DOI: 10.7554/eLife.54932   
2021 Duncan BW, Murphy KE, Maness PF. Molecular Mechanisms of L1 and NCAM Adhesion Molecules in Synaptic Pruning, Plasticity, and Stabilization. Frontiers in Cell and Developmental Biology. 9: 625340. PMID 33585481 DOI: 10.3389/fcell.2021.625340   
2021 Wang X, Jin Y, Hao K. Computational Modeling of Structural Synaptic Plasticity in Echo State Networks. Ieee Transactions On Cybernetics. PMID 33760748 DOI: 10.1109/TCYB.2021.3060466   
2021 Chowdhury D, Watters K, Biederer T. Synaptic recognition molecules in development and disease. Current Topics in Developmental Biology. 142: 319-370. PMID 33706921 DOI: 10.1016/bs.ctdb.2020.12.009   
2021 Dembitskaya Y, Gavrilov N, Kraev I, Doronin M, Tang Y, Li L, Semyanov A. Attenuation of the extracellular matrix increases the number of synapses but suppresses synaptic plasticity through upregulation of SK channels. Cell Calcium. 96: 102406. PMID 33848733 DOI: 10.1016/j.ceca.2021.102406   
2021 Lenz M, Eichler A, Vlachos A. Monitoring and Modulating Inflammation-Associated Alterations in Synaptic Plasticity: Role of Brain Stimulation and the Blood-Brain Interface. Biomolecules. 11. PMID 33652912 DOI: 10.3390/biom11030359   
2021 Reitz SJ, Sauerbeck AD, Kummer TT. SEQUIN: An imaging and analysis platform for quantification and characterization of synaptic structures in mouse. Star Protocols. 2: 100268. PMID 33490984 DOI: 10.1016/j.xpro.2020.100268   
2021 Singh N, Bartol T, Levine H, Sejnowski T, Nadkarni S. Presynaptic endoplasmic reticulum regulates short-term plasticity in hippocampal synapses. Communications Biology. 4: 241. PMID 33623091 DOI: 10.1038/s42003-021-01761-7   
2021 Diaz A, Torre E, Yepes M. Preparation of Synaptoneurosomes to Study the Synapse in the Murine Cerebral Cortex. Bio-Protocol. 11: e3896. PMID 33732785 DOI: 10.21769/BioProtoc.3896   
2021 Chiang CW, Shu WC, Wan J, Weaver BA, Jackson MB. Recordings from neuron-HEK cell cocultures reveal the determinants of miniature excitatory postsynaptic currents. The Journal of General Physiology. 153. PMID 33755721 DOI: 10.1085/jgp.202012849   
2021 Sokolova D, Childs T, Hong S. Insight into the role of phosphatidylserine in complement-mediated synapse loss in Alzheimer's disease. Faculty Reviews. 10: 19. PMID 33718936 DOI: 10.12703/r/10-19   
2021 Kashiwagi Y, Okabe S. Imaging of spine synapses using super-resolution microscopy. Anatomical Science International. PMID 33459976 DOI: 10.1007/s12565-021-00603-0   
2021 Shimell JJ, Globa A, Sepers MD, Wild AR, Matin N, Raymond LA, Bamji SX. Regulation of hippocampal excitatory synapses by the Zdhhc5 palmitoyl acyl transferase. Journal of Cell Science. PMID 33758079 DOI: 10.1242/jcs.254276   
2021 Colombo MN, Maiellano G, Putignano S, Scandella L, Francolini M. Comparative 2D and 3D Ultrastructural Analyses of Dendritic Spines from CA1 Pyramidal Neurons in the Mouse Hippocampus. International Journal of Molecular Sciences. 22. PMID 33530380 DOI: 10.3390/ijms22031188   
2021 Lee HR, Lee D, Oh JH. A Hippocampus-Inspired Dual-Gated Organic Artificial Synapse for Simultaneous Sensing of a Neurotransmitter and Light. Advanced Materials (Deerfield Beach, Fla.). e2100119. PMID 33754389 DOI: 10.1002/adma.202100119   
2021 Wang F, Wang Q, Liu B, Mei L, Ma S, Wang S, Wang R, Zhang Y, Niu C, Xiong Z, Zheng Y, Zhang Z, Shi J, Song X. The long noncoding RNA Synage regulates synapse stability and neuronal function in the cerebellum. Cell Death and Differentiation. PMID 33762741 DOI: 10.1038/s41418-021-00774-3   
2021 Soykan T, Haucke V, Kuijpers M. Mechanism of synaptic protein turnover and its regulation by neuronal activity. Current Opinion in Neurobiology. 69: 76-83. PMID 33744822 DOI: 10.1016/j.conb.2021.02.006   
2021 Sethuramanujam S, Matsumoto A, deRosenroll G, Murphy-Baum B, McIntosh JM, Jing M, Li Y, Berson D, Yonehara K, Awatramani GB. Rapid multi-directed cholinergic transmission in the central nervous system. Nature Communications. 12: 1374. PMID 33654091 DOI: 10.1038/s41467-021-21680-9   
2021 Zhu Y, Uytiepo M, Bushong E, Haberl M, Beutter E, Scheiwe F, Zhang W, Chang L, Luu D, Chui B, Ellisman M, Maximov A. Nanoscale 3D EM reconstructions reveal intrinsic mechanisms of structural diversity of chemical synapses. Cell Reports. 35: 108953. PMID 33826888 DOI: 10.1016/j.celrep.2021.108953   
2021 Midorikawa M, Miyata M. Distinct functional developments of surviving and eliminated presynaptic terminals. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33688051 DOI: 10.1073/pnas.2022423118   
2021 Tan CX, Burrus Lane CJ, Eroglu C. Role of astrocytes in synapse formation and maturation. Current Topics in Developmental Biology. 142: 371-407. PMID 33706922 DOI: 10.1016/bs.ctdb.2020.12.010   
2021 Kuhlmann N, Wagner Valladolid M, Quesada-Ramírez L, Farrer MJ, Milnerwood AJ. Chronic and Acute Manipulation of Cortical Glutamate Transmission Induces Structural and Synaptic Changes in Co-cultured Striatal Neurons. Frontiers in Cellular Neuroscience. 15: 569031. PMID 33679324 DOI: 10.3389/fncel.2021.569031   
2021 Ke Y, Mao L, Jie W, Gong T, Huang W, Zhang X. An Artificial Electrical-Chemical Mixed Synapse Based on Ion-Gated MoS Nanosheets for Real-Time Facilitation Index Tuning. Acs Applied Materials & Interfaces. PMID 33755438 DOI: 10.1021/acsami.0c21161   
2021 Yu J, Yang X, Gao G, Xiong Y, Wang Y, Han J, Chen Y, Zhang H, Sun Q, Wang ZL. Bioinspired mechano-photonic artificial synapse based on graphene/MoS heterostructure. Science Advances. 7. PMID 33731346 DOI: 10.1126/sciadv.abd9117   
2021 Emperador-Melero J, de Nola G, Kaeser PS. Intact synapse structure and function after combined knockout of PTPδ, PTPσ, and LAR. Elife. 10. PMID 33656439 DOI: 10.7554/eLife.66638   
2021 Zhang J, Lu Y, Dai S, Wang R, Hao D, Zhang S, Xiong L, Huang J. Retina-Inspired Organic Heterojunction-Based Optoelectronic Synapses for Artificial Visual Systems. Research (Washington, D.C.). 2021: 7131895. PMID 33709082 DOI: 10.34133/2021/7131895   
2021 Jähne S, Mikulasch F, Heuer HGH, Truckenbrodt S, Agüi-Gonzalez P, Grewe K, Vogts A, Rizzoli SO, Priesemann V. Presynaptic activity and protein turnover are correlated at the single-synapse level. Cell Reports. 34: 108841. PMID 33730575 DOI: 10.1016/j.celrep.2021.108841   
2021 Xu Y, Song X, Wang D, Wang Y, Li P, Li J. Proteomic insights into synaptic signaling in the brain: the past, present and future. Molecular Brain. 14: 37. PMID 33596935 DOI: 10.1186/s13041-021-00750-5   
2021 Lee G, Baek JH, Ren F, Pearton SJ, Lee GH, Kim J. Artificial Neuron and Synapse Devices Based on 2D Materials. Small (Weinheim An Der Bergstrasse, Germany). e2100640. PMID 33817985 DOI: 10.1002/smll.202100640   
2021 Scudder SL, Gonzales FR, Howell KK, Stein IS, Dozier LE, Anagnostaras SG, Zito K, Patrick GN. Altered phosphorylation of the proteasome subunit Rpt6 has minimal impact on synaptic plasticity and learning. Eneuro. PMID 33658307 DOI: 10.1523/ENEURO.0073-20.2021   
2021 Zeng T, Zou X, Wang Z, Yu G, Yang Z, Rong H, Zhang C, Xu H, Lin Y, Zhao X, Ma J, Zhu G, Liu Y. Zeolite-Based Memristive Synapse with Ultralow Sub-10-fJ Energy Consumption for Neuromorphic Computation. Small (Weinheim An Der Bergstrasse, Germany). e2006662. PMID 33738968 DOI: 10.1002/smll.202006662   
2021 Robinson PA, Gao X, Han Y. Relationships between lognormal distributions of neural properties, activity, criticality, and connectivity. Biological Cybernetics. PMID 33825983 DOI: 10.1007/s00422-021-00871-z   
2021 Yasuda M, Nagappan-Chettiar S, Johnson-Venkatesh EM, Umemori H. An activity-dependent determinant of synapse elimination in the mammalian brain. Neuron. PMID 33770504 DOI: 10.1016/j.neuron.2021.03.006   
2021 Franceschi Biagioni A, Cellot G, Pati E, Lozano N, Ballesteros B, Casani R, Coimbra NC, Kostarelos K, Ballerini L. Graphene oxide prevents lateral amygdala dysfunctional synaptic plasticity and reverts long lasting anxiety behavior in rats. Biomaterials. 271: 120749. PMID 33714913 DOI: 10.1016/j.biomaterials.2021.120749   
2021 Wenzel M, Leunig A, Han S, Peterka DS, Yuste R. Prolonged anesthesia alters brain synaptic architecture. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33568534 DOI: 10.1073/pnas.2023676118   
2021 Gratuze M, Holtzman DM. Targeting pre-synaptic tau accumulation: a new strategy to counteract tau-mediated synaptic loss and memory deficits. Neuron. 109: 741-743. PMID 33662267 DOI: 10.1016/j.neuron.2021.02.014   
2021 Wan L, Liu D, Xiao WB, Zhang BX, Yan XX, Luo ZH, Xiao B. Association of SHANK Family with Neuropsychiatric Disorders: An Update on Genetic and Animal Model Discoveries. Cellular and Molecular Neurobiology. PMID 33595806 DOI: 10.1007/s10571-021-01054-x   
2021 Chen J, Cho KE, Skwarzynska D, Clancy S, Conley NJ, Clinton SM, Li X, Lin L, Zhu JJ. The property-based practical applications and solutions of genetically encoded acetylcholine and monoamine sensors. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 33627325 DOI: 10.1523/JNEUROSCI.1062-19.2020   
2021 Kawabe H, Stegmüller J. The role of E3 ubiquitin ligases in synapse function in the healthy and diseased brain. Molecular and Cellular Neurosciences. 112: 103602. PMID 33581237 DOI: 10.1016/j.mcn.2021.103602   
2021 Haddix SG, Rasband MN. Lose it to use it. The Journal of Cell Biology. 220. PMID 33734302 DOI: 10.1083/jcb.202102030   
2021 Parato J, Bartolini F. The Microtubule Cytoskeleton at the Synapse. Neuroscience Letters. 135850. PMID 33775740 DOI: 10.1016/j.neulet.2021.135850   
2021 Román-Vendrell C, Medeiros AT, Sanderson JB, Jiang H, Bartels T, Morgan JR. Effects of Excess Brain-Derived Human α-Synuclein on Synaptic Vesicle Trafficking. Frontiers in Neuroscience. 15: 639414. PMID 33613189 DOI: 10.3389/fnins.2021.639414   
2021 Flores-Soto M, Romero-Guerrero C, Vázquez-Hernández N, Tejeda-Martínez A, Martín-Amaya-Barajas FL, Orozco-Suárez S, González-Burgos I. Pentylenetetrazol-induced seizures in adult rats are associated with plastic changes to the dendritic spines on hippocampal CA1 pyramidal neurons. Behavioural Brain Research. 406: 113198. PMID 33657439 DOI: 10.1016/j.bbr.2021.113198   
2021 Michiels L, Delva A, van Aalst J, Ceccarini J, Vandenberghe W, Vandenbulcke M, Koole M, Lemmens R, Laere KV. Synaptic density in healthy human aging is not influenced by age or sex: a C-UCB-J PET study. Neuroimage. 232: 117877. PMID 33639258 DOI: 10.1016/j.neuroimage.2021.117877   
2021 Mirza FJ, Amber S, Sumera, Hassan D, Ahmed T, Zahid S. Rosmarinic acid and ursolic acid alleviate deficits in cognition, synaptic regulation and adult hippocampal neurogenesis in an Aβ-induced mouse model of Alzheimer's disease. Phytomedicine : International Journal of Phytotherapy and Phytopharmacology. 83: 153490. PMID 33601255 DOI: 10.1016/j.phymed.2021.153490   
2021 Loera-Valencia R, Vazquez-Juarez E, Muñoz A, Gerenu G, Gómez-Galán M, Lindskog M, DeFelipe J, Cedazo-Minguez A, Merino-Serrais P. High levels of 27-hydroxycholesterol results in synaptic plasticity alterations in the hippocampus. Scientific Reports. 11: 3736. PMID 33580102 DOI: 10.1038/s41598-021-83008-3   
2021 Lowery RL, Mendes MS, Sanders BT, Murphy AJ, Whitelaw BS, Lamantia CE, Majewska AK. Loss of P2Y12 Has Behavioral Effects in the Adult Mouse. International Journal of Molecular Sciences. 22. PMID 33668516 DOI: 10.3390/ijms22041868   
2021 Egaña-Huguet J, Bonilla-Del Río I, Gómez-Urquijo SM, Mimenza A, Saumell-Esnaola M, Borrega-Roman L, García Del Caño G, Sallés J, Puente N, Gerrikagoitia I, Elezgarai I, Grandes P. The Absence of the Transient Receptor Potential Vanilloid 1 Directly Impacts on the Expression and Localization of the Endocannabinoid System in the Mouse Hippocampus. Frontiers in Neuroanatomy. 15: 645940. PMID 33692673 DOI: 10.3389/fnana.2021.645940