| Year |
Citation |
Score |
| 2024 |
Channagiri T, Ferrari MM, Jeon Y, Xu P, Storici F, Jonoska N. DSBplot: Indels in DNA Double-strand Break Repair Experiments. Arxiv. PMID 38235064 |
0.5 |
|
| 2023 |
Xu P, Yang T, Kundnani DL, Sun M, Marsili S, Gombolay AL, Jeon Y, Newnam G, Balachander S, Bazzani V, Baccarani U, Park VS, Tao S, Lori A, Schinazi RF, ... ... Storici F, et al. Light-strand bias and enriched zones of embedded ribonucleotides are associated with DNA replication and transcription in the human-mitochondrial genome. Nucleic Acids Research. PMID 38117983 DOI: 10.1093/nar/gkad1204 |
0.542 |
|
| 2023 |
Kundnani DL, Yang T, Gombolay AL, Mukherjee K, Newnam G, Meers C, Mehta ZH, Mouawad C, Storici F. Distinct features of ribonucleotides within genomic DNA in Aicardi-Goutières syndrome (AGS)-ortholog mutants of . Biorxiv : the Preprint Server For Biology. PMID 37873120 DOI: 10.1101/2023.10.02.560505 |
0.388 |
|
| 2023 |
Malfatti MC, Codrich M, Dalla E, D'Ambrosio C, Storici F, Scaloni A, Tell G. AUF1 recognizes 8-oxo-guanosine embedded in DNA and stimulates APE1 endoribonuclease activity. Antioxidants & Redox Signaling. PMID 36855946 DOI: 10.1089/ars.2022.0105 |
0.453 |
|
| 2021 |
Xu P, Storici F. RESCOT: Restriction Enzyme Set and Combination Optimization Tools for rNMP Capture Techniques. Theoretical Computer Science. 894: 203-213. PMID 34924677 DOI: 10.1016/j.tcs.2021.08.006 |
0.35 |
|
| 2021 |
Xu P, Storici F. Frequency and patterns of ribonucleotide incorporation around autonomously replicating sequences in yeast reveal the division of labor of replicative DNA polymerases. Nucleic Acids Research. 49: 10542-10557. PMID 34551434 DOI: 10.1093/nar/gkab801 |
0.579 |
|
| 2021 |
Gombolay AL, Storici F. Mapping ribonucleotides embedded in genomic DNA to single-nucleotide resolution using Ribose-Map. Nature Protocols. 16: 3625-3638. PMID 34089018 DOI: 10.1038/s41596-021-00553-x |
0.414 |
|
| 2021 |
Marsili S, Tichon A, Kundnani D, Storici F. Gene Co-Expression Analysis of Human Reveals Functional Networks Associated with DNA Replication, DNA Damage Response, and Cell Cycle Regulation. Biology. 10. PMID 33805806 DOI: 10.3390/biology10030221 |
0.439 |
|
| 2021 |
El-Sayed WMM, Gombolay AL, Xu P, Yang T, Jeon Y, Balachander S, Newnam G, Tao S, Bowen NE, Brůna T, Borodovsky M, Schinazi RF, Kim B, Chen Y, Storici F. Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of . Iscience. 24: 102005. PMID 33490913 DOI: 10.1016/j.isci.2020.102005 |
0.472 |
|
| 2020 |
Meers C, Keskin H, Banyai G, Mazina O, Yang T, Gombolay AL, Mukherjee K, Kaparos EI, Newnam G, Mazin A, Storici F. Genetic Characterization of Three Distinct Mechanisms Supporting RNA-Driven DNA Repair and Modification Reveals Major Role of DNA Polymerase ζ. Molecular Cell. PMID 32882183 DOI: 10.1016/J.Molcel.2020.08.011 |
0.607 |
|
| 2020 |
Balachander S, Gombolay AL, Yang T, Xu P, Newnam G, Keskin H, El-Sayed WMM, Bryksin AV, Tao S, Bowen NE, Schinazi RF, Kim B, Koh KD, Vannberg FO, Storici F. Ribonucleotide incorporation in yeast genomic DNA shows preference for cytosine and guanosine preceded by deoxyadenosine. Nature Communications. 11: 2447. PMID 32415081 DOI: 10.1038/S41467-020-16152-5 |
0.603 |
|
| 2019 |
Mukherjee K, English N, Meers C, Kim H, Jonke A, Storici F, Torres M. Systematic analysis of linker histone PTM hotspots reveals phosphorylation sites that modulate homologous recombination and DSB repair. Dna Repair. 86: 102763. PMID 31821952 DOI: 10.1016/J.Dnarep.2019.102763 |
0.554 |
|
| 2019 |
Balachander S, Yang T, Newnam G, El-Sayed WMM, Koh KD, Storici F. Capture of Ribonucleotides in Yeast Genomic DNA Using Ribose-Seq. Methods in Molecular Biology (Clifton, N.J.). 2049: 17-37. PMID 31602603 DOI: 10.1007/978-1-4939-9736-7_2 |
0.616 |
|
| 2019 |
Koh KD, Balachander S, Hesselberth JR, Storici F. Addendum: Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA. Nature Methods. PMID 31324896 DOI: 10.1038/S41592-019-0505-9 |
0.492 |
|
| 2019 |
Malfatti MC, Henneke G, Balachander S, Koh KD, Newnam G, Uehara R, Crouch RJ, Storici F, Tell G. Unlike the E. coli counterpart, archaeal RNase HII cannot process ribose monophosphate abasic sites and oxidized ribonucleotides embedded in DNA. The Journal of Biological Chemistry. PMID 31300556 DOI: 10.1074/Jbc.Ra119.009493 |
0.576 |
|
| 2018 |
Gombolay AL, Vannberg FO, Storici F. Ribose-Map: a bioinformatics toolkit to map ribonucleotides embedded in genomic DNA. Nucleic Acids Research. PMID 30272244 DOI: 10.1093/Nar/Gky874 |
0.392 |
|
| 2018 |
Michelini F, Jalihal AP, Francia S, Meers C, Neeb ZT, Rossiello F, Gioia U, Aguado J, Jones-Weinert C, Luke B, Biamonti G, Nowacki M, Storici F, Carninci P, Walter NG, et al. From "Cellular" RNA to "Smart" RNA: Multiple Roles of RNA in Genome Stability and Beyond. Chemical Reviews. PMID 29600857 DOI: 10.1021/Acs.Chemrev.7B00487 |
0.407 |
|
| 2018 |
Keskin H, Storici F. An Approach to Detect and Study DNA Double-Strand Break Repair by Transcript RNA Using a Spliced-Antisense RNA Template. Methods in Enzymology. 601: 59-70. PMID 29523242 DOI: 10.1016/Bs.Mie.2017.11.026 |
0.588 |
|
| 2017 |
Storici F, Tichon AE. RNA takes over control of DNA break repair Nature Cell Biology. 19: 1382-1384. PMID 29184180 DOI: 10.1038/Ncb3645 |
0.591 |
|
| 2017 |
Malfatti MC, Balachander S, Antoniali G, Koh KD, Saint-Pierre C, Gasparutto D, Chon H, Crouch RJ, Storici F, Tell G. Abasic and oxidized ribonucleotides embedded in DNA are processed by human APE1 and not by RNase H2. Nucleic Acids Research. PMID 28977421 DOI: 10.1093/Nar/Gkx723 |
0.546 |
|
| 2017 |
Mazina OM, Keskin H, Hanamshet K, Storici F, Mazin AV. Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair. Molecular Cell. PMID 28602639 DOI: 10.1016/J.Molcel.2017.05.019 |
0.579 |
|
| 2016 |
Evich M, Spring-Connell AM, Storici F, Germann MW. Structural impact of single ribonucleotides in DNA. Chembiochem : a European Journal of Chemical Biology. PMID 27504600 DOI: 10.1002/Cbic.201600385 |
0.522 |
|
| 2016 |
Meers C, Keskin H, Storici F. DNA repair by RNA: Templated, or not templated, that is the question Dna Repair. 44: 17-21. PMID 27237587 DOI: 10.1016/J.Dnarep.2016.05.002 |
0.605 |
|
| 2016 |
Keskin H, Meers C, Storici F. Transcript RNA supports precise repair of its own DNA gene. Rna Biology. 13: 157-165. PMID 26637053 DOI: 10.1080/15476286.2015.1116676 |
0.609 |
|
| 2016 |
Keskin H, Storici F. Defects in RNase H2 Stimulate DNA Break Repair by RNA Reverse Transcribed into cDNA. Microrna (Shariqah, United Arab Emirates). 4: 109-16. PMID 26456534 DOI: 10.2174/2211536604666150820120129 |
0.36 |
|
| 2015 |
Koh KD, Chiu HC, Riedo E, Storici F. Measuring the elasticity of ribonucleotide(s)-containing DNA molecules using AFM. Methods in Molecular Biology (Clifton, N.J.). 1297: 43-57. PMID 25895994 DOI: 10.1007/978-1-4939-2562-9_3 |
0.572 |
|
| 2015 |
Koh KD, Balachander S, Hesselberth JR, Storici F. Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA. Nature Methods. 12: 251-7, 3 p following. PMID 25622106 DOI: 10.1038/Nmeth.3259 |
0.592 |
|
| 2014 |
Keskin H, Shen Y, Huang F, Patel M, Yang T, Ashley K, Mazin AV, Storici F. Transcript-RNA-templated DNA recombination and repair. Nature. 515: 436-9. PMID 25186730 DOI: 10.1038/Nature13682 |
0.623 |
|
| 2014 |
Chiu HC, Koh KD, Evich M, Lesiak AL, Germann MW, Bongiorno A, Riedo E, Storici F. RNA intrusions change DNA elastic properties and structure. Nanoscale. 6: 10009-17. PMID 24992674 DOI: 10.1039/C4Nr01794C |
0.591 |
|
| 2014 |
Katz SS, Gimble FS, Storici F. To nick or not to nick: comparison of I-SceI single- and double-strand break-induced recombination in yeast and human cells. Plos One. 9: e88840. PMID 24558436 DOI: 10.1371/Journal.Pone.0088840 |
0.573 |
|
| 2014 |
Stuckey S, Storici F. Genetic modification stimulated by the induction of a site-specific break distant from the locus of correction in haploid and diploid yeast Saccharomyces cerevisiae. Methods in Molecular Biology (Clifton, N.J.). 1114: 309-24. PMID 24557912 DOI: 10.1007/978-1-62703-761-7_20 |
0.493 |
|
| 2014 |
Ruff P, Koh KD, Keskin H, Pai RB, Storici F. Aptamer-guided gene targeting in yeast and human cells Nucleic Acids Research. 42. PMID 24500205 DOI: 10.1093/Nar/Gku101 |
0.539 |
|
| 2013 |
Stuckey S, Storici F. Gene knockouts, in vivo site-directed mutagenesis and other modifications using the delitto perfetto system in Saccharomyces cerevisiae. Methods in Enzymology. 533: 103-31. PMID 24182920 DOI: 10.1016/B978-0-12-420067-8.00008-8 |
0.427 |
|
| 2012 |
Ruff P, Pai RB, Storici F. Real-Time PCR-Coupled CE-SELEX for DNA Aptamer Selection International Scholarly Research Notices. 2012: 939083-939083. PMID 27335672 DOI: 10.5402/2012/939083 |
0.323 |
|
| 2012 |
Mukherjee K, Storici F. A mechanism of gene amplification driven by small DNA fragments. Plos Genetics. 8: e1003119. PMID 23271978 DOI: 10.1371/Journal.Pgen.1003119 |
0.609 |
|
| 2012 |
Shen Y, Koh KD, Weiss B, Storici F. Mispaired rNMPs in DNA are mutagenic and are targets of mismatch repair and RNases H. Nature Structural & Molecular Biology. 19: 98-104. PMID 22139012 DOI: 10.1038/Nsmb.2176 |
0.589 |
|
| 2011 |
Shen Y, Storici F. Detection of RNA-templated double-strand break repair in yeast. Methods of Molecular Biology. 745: 193-204. PMID 21660696 DOI: 10.1007/978-1-61779-129-1_12 |
0.592 |
|
| 2011 |
Stuckey S, Mukherjee K, Storici F. In vivo site-specific mutagenesis and gene collage using the delitto perfetto system in yeast Saccharomyces cerevisiae. Methods in Molecular Biology (Clifton, N.J.). 745: 173-91. PMID 21660695 DOI: 10.1007/978-1-61779-129-1_11 |
0.503 |
|
| 2011 |
Shen Y, Nandi P, Taylor MB, Stuckey S, Bhadsavle HP, Weiss B, Storici F. RNA-driven genetic changes in bacteria and in human cells. Mutation Research. 717: 91-8. PMID 21515292 DOI: 10.1016/J.Mrfmmm.2011.03.016 |
0.629 |
|
| 2010 |
Shen Y, Storici F. Generation of RNA/DNA Hybrids in Genomic DNA by Transformation using RNA-containing Oligonucleotides Journal of Visualized Experiments. PMID 21178953 DOI: 10.3791/2152 |
0.614 |
|
| 2009 |
Hirsch ML, Storici F, Li C, Choi VW, Samulski RJ. AAV recombineering with single strand oligonucleotides. Plos One. 4: e7705. PMID 19888330 DOI: 10.1371/Journal.Pone.0007705 |
0.586 |
|
| 2008 |
Yang Y, Sterling J, Storici F, Resnick MA, Gordenin DA. Hypermutability of damaged single-strand DNA formed at double-strand breaks and uncapped telomeres in yeast Saccharomyces cerevisiae. Plos Genetics. 4: e1000264. PMID 19023402 DOI: 10.1371/Journal.Pgen.1000264 |
0.599 |
|
| 2008 |
Storici F. RNA-mediated DNA modifications and RNA-templated DNA repair. Current Opinion in Molecular Therapeutics. 10: 224-30. PMID 18535929 |
0.498 |
|
| 2007 |
Storici F, Bebenek K, Kunkel TA, Gordenin DA, Resnick MA. RNA-templated DNA repair. Nature. 447: 338-41. PMID 17429354 DOI: 10.1038/Nature05720 |
0.625 |
|
| 2007 |
Storici F, Bebenek K, Kunkel TA, Gordenin DA, Resnick MA. Erratum: RNA-templated DNA repair Nature. 448: 1076-1076. DOI: 10.1038/Nature06114 |
0.436 |
|
| 2006 |
Storici F, Snipe JR, Chan GK, Gordenin DA, Resnick MA. Conservative repair of a chromosomal double-strand break by single-strand DNA through two steps of annealing. Molecular and Cellular Biology. 26: 7645-57. PMID 16908537 DOI: 10.1128/Mcb.00672-06 |
0.601 |
|
| 2006 |
Storici F, Resnick MA. The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast. Methods in Enzymology. 409: 329-45. PMID 16793410 DOI: 10.1016/S0076-6879(05)09019-1 |
0.414 |
|
| 2005 |
Tomso DJ, Inga A, Menendez D, Pittman GS, Campbell MR, Storici F, Bell DA, Resnick MA. Functionally distinct polymorphic sequences in the human genome that are targets for p53 transactivation. Proceedings of the National Academy of Sciences of the United States of America. 102: 6431-6. PMID 15843459 DOI: 10.1073/Pnas.0501721102 |
0.306 |
|
| 2004 |
Lewis LK, Storici F, Van Komen S, Calero S, Sung P, Resnick MA. Role of the nuclease activity of Saccharomyces cerevisiae Mre11 in repair of DNA double-strand breaks in mitotic cells. Genetics. 166: 1701-13. PMID 15126391 DOI: 10.1534/Genetics.166.4.1701 |
0.501 |
|
| 2003 |
Storici F, Resnick MA. Delitto perfetto targeted mutagenesis in yeast with oligonucleotides. Genetic Engineering. 25: 189-207. PMID 15260239 DOI: 10.1007/978-1-4615-0073-5_9 |
0.571 |
|
| 2003 |
Storici F, Durham CL, Gordenin DA, Resnick MA. Chromosomal site-specific double-strand breaks are efficiently targeted for repair by oligonucleotides in yeast. Proceedings of the National Academy of Sciences of the United States of America. 100: 14994-9. PMID 14630945 DOI: 10.1073/Pnas.2036296100 |
0.576 |
|
| 2002 |
Inga A, Storici F, Darden TA, Resnick MA. Differential transactivation by the p53 transcription factor is highly dependent on p53 level and promoter target sequence. Molecular and Cellular Biology. 22: 8612-25. PMID 12446780 DOI: 10.1128/Mcb.22.24.8612-8625.2002 |
0.312 |
|
| 2002 |
Storici F, Henneke G, Ferrari E, Gordenin DA, Hübscher U, Resnick MA. The flexible loop of human FEN1 endonuclease is required for flap cleavage during DNA replication and repair. The Embo Journal. 21: 5930-42. PMID 12411510 DOI: 10.1093/Emboj/Cdf587 |
0.444 |
|
| 2001 |
Storici F, Lewis LK, Resnick MA. In vivo site-directed mutagenesis using oligonucleotides. Nature Biotechnology. 19: 773-6. PMID 11479573 DOI: 10.1038/90837 |
0.465 |
|
| 1999 |
Storici F, Coglievina M, Bruschi CV. A 2‐μm DNA‐based marker recycling system for multiple gene dispruption in the yeast Saccharomyces cerevisiae Yeast. 15: 271-283. PMID 10206187 DOI: 10.1002/(Sici)1097-0061(19990315)15:4<271::Aid-Yea371>3.0.Co;2-U |
0.41 |
|
| 1997 |
Storici F, Bruschi CV. Molecular engineering with the FRT sequence of the yeast 2 microm plasmid: [cir0] segregant enrichment by counterselection for 2 microm site-specific recombination. Gene. 195: 245-255. PMID 9305770 DOI: 10.1016/S0378-1119(97)81116-X |
0.474 |
|
| 1995 |
Storici F, Oberto J, Bruschi CV. TheCDC6Gene Is Required for Centromeric, Episomal, and 2-μm Plasmid Stability in the YeastSaccharomyces cerevisiae Plasmid. 34: 184-197. PMID 8825371 DOI: 10.1006/Plas.1995.0004 |
0.364 |
|
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