Year |
Citation |
Score |
2021 |
Banerjee H, Singh R. Genomic and cDNA selection-amplification identifies transcriptome-wide binding sites for the Drosophila protein sex-lethal. Plos One. 16: e0250592. PMID 34029324 DOI: 10.1371/journal.pone.0250592 |
0.406 |
|
2019 |
Singh R. Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins. Journal of Visualized Experiments : Jove. PMID 31449261 DOI: 10.3791/59635 |
0.534 |
|
2018 |
Singh R. A Novel Saturation Mutagenesis Approach: Single Step Characterization of Regulatory Protein Binding Sites in RNA Using Phosphorothioates. Journal of Visualized Experiments : Jove. PMID 30199036 DOI: 10.3791/57816 |
0.525 |
|
2016 |
Sridharan V, Heimiller J, Robida MD, Singh R. High Throughput Sequencing Identifies Misregulated Genes in the Drosophila Polypyrimidine Tract-Binding Protein (hephaestus) Mutant Defective in Spermatogenesis. Plos One. 11: e0150768. PMID 26942929 DOI: 10.1371/Journal.Pone.0150768 |
0.71 |
|
2015 |
Singh R. Bioinformatics Analysis to Identify RNA-Protein Interactions in Oogenesis. Methods in Molecular Biology (Clifton, N.J.). 1328: 231-41. PMID 26324442 DOI: 10.1007/978-1-4939-2851-4_17 |
0.454 |
|
2014 |
Heimiller J, Sridharan V, Huntley J, Wesley CS, Singh R. Drosophila polypyrimidine tract-binding protein (DmPTB) regulates dorso-ventral patterning genes in embryos. Plos One. 9: e98585. PMID 25014769 DOI: 10.1371/Journal.Pone.0098585 |
0.768 |
|
2011 |
Hartmann B, Castelo R, Miñana B, Peden E, Blanchette M, Rio DC, Singh R, Valcárcel J. Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster. Rna (New York, N.Y.). 17: 453-68. PMID 21233220 DOI: 10.1261/Rna.2460411 |
0.514 |
|
2011 |
Sridharan V, Heimiller J, Singh R. Genomic mRNA profiling reveals compensatory mechanisms for the requirement of the essential splicing factor U2AF. Molecular and Cellular Biology. 31: 652-661. PMID 21149581 DOI: 10.1128/Mcb.01000-10 |
0.749 |
|
2010 |
Robida M, Sridharan V, Morgan S, Rao T, Singh R. Drosophila polypyrimidine tract-binding protein is necessary for spermatid individualization. Proceedings of the National Academy of Sciences of the United States of America. 107: 12570-5. PMID 20616016 DOI: 10.1073/Pnas.1007935107 |
0.777 |
|
2009 |
Shepherd AK, Singh R, Wesley CS. Notch mRNA expression in Drosophila embryos is negatively regulated at the level of mRNA 3' processing. Plos One. 4: e8063. PMID 19956683 DOI: 10.1371/Journal.Pone.0008063 |
0.416 |
|
2008 |
Banerjee H, Singh R. A simple crosslinking method, CLAMP, to map the sites of RNA-contacting domains within a protein Methods in Molecular Biology (Clifton, N.J.). 488: 181-190. PMID 18982291 DOI: 10.1007/978-1-60327-475-3_12 |
0.42 |
|
2007 |
Sridharan V, Singh R. A conditional role of U2AF in splicing of introns with unconventional polypyrimidine tracts. Molecular and Cellular Biology. 27: 7334-7344. PMID 17709389 DOI: 10.1128/Mcb.00627-07 |
0.521 |
|
2007 |
Robida MD, Rahn A, Singh R. Genome-wide identification of alternatively spliced mRNA targets of specific RNA-binding proteins. Plos One. 2: e520. PMID 17565373 DOI: 10.1371/Journal.Pone.0000520 |
0.769 |
|
2006 |
Gawande B, Robida MD, Rahn A, Singh R. Drosophila Sex-lethal protein mediates polyadenylation switching in the female germline. The Embo Journal. 25: 1263-72. PMID 16511567 DOI: 10.1038/Sj.Emboj.7601022 |
0.749 |
|
2006 |
Hamady M, Peden E, Knight R, Singh R. Fast-Find: A novel computational approach to analyzing combinatorial motifs Bmc Bioinformatics. 7: 1-10. PMID 16393334 DOI: 10.1186/1471-2105-7-1 |
0.407 |
|
2006 |
Singh R, Robida MD, Karimpour S. Building Biological Complexity with Limited Genes Current Genomics. 7: 97-114. DOI: 10.2174/138920206777304669 |
0.687 |
|
2005 |
Singh R, Valcárcel J. Building specificity with nonspecific RNA-binding proteins. Nature Structural & Molecular Biology. 12: 645-653. PMID 16077728 DOI: 10.1038/Nsmb961 |
0.467 |
|
2005 |
Singh R, Valcárcel J. Erratum: Building specificity with nonspecific RNA-binding proteins Nature Structural & Molecular Biology. 12: 824-824. DOI: 10.1038/Nsmb0905-824B |
0.412 |
|
2004 |
Banerjee H, Rahn A, Gawande B, Guth S, Valcárcel J, Singh R. The conserved RNA recognition motif 3 of U2 snRNA auxiliary factor (U2AF65) is essential in vivo but dispensable for activity in vitro Rna. 10: 240-253. PMID 14730023 DOI: 10.1261/Rna.5153204 |
0.486 |
|
2003 |
Robida MD, Singh R. Drosophila polypyrimidine-tract binding protein (PTB) functions specifically in the male germline. The Embo Journal. 22: 2924-33. PMID 12805208 DOI: 10.1093/Emboj/Cdg301 |
0.752 |
|
2003 |
Banerjee H, Rahn A, Davis W, Singh R. Sex lethal and U2 small nuclear ribonucleoprotein auxiliary factor (U2AF65) recognize polypyrimidine tracts using multiple modes of binding Rna. 9: 88-99. PMID 12554879 DOI: 10.1261/Rna.2131603 |
0.484 |
|
2002 |
Singh R. RNA-protein interactions that regulate pre-mRNA splicing Gene Expression. 10: 79-92. PMID 11868989 |
0.436 |
|
2000 |
Singh R, Banerjee H, Green MR. Differential recognition of the polypyrimidine-tract by the general splicing factor U2AF65 and the splicing repressor sex-lethal Rna. 6: 901-911. PMID 10864047 DOI: 10.1017/S1355838200000376 |
0.512 |
|
1997 |
Zapp ML, Young DW, Kumar A, Singh R, Boykin DW, Wilson WD, Green MR. Modulation of the Rev-RRE interaction by aromatic heterocyclic compounds. Bioorganic & Medicinal Chemistry. 5: 1149-55. PMID 9222509 DOI: 10.1016/S0968-0896(97)00063-1 |
0.397 |
|
1996 |
Valcárcel J, Gaur RK, Singh R, Green MR. Interaction of U2AF65 RS Region with Pre-mRNA of Branch Point and Promotion Base Pairing with U2 snRNA Science. 273: 1706-1709. PMID 8781232 DOI: 10.1126/Science.273.5282.1706 |
0.408 |
|
1995 |
Singh R, Valcarcel J, Green MR. Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins Science. 268: 1173-1176. PMID 7761834 DOI: 10.1126/Science.7761834 |
0.549 |
|
1993 |
Singh R, Green MR. Sequence-specific binding of transfer RNA by glyceraldehyde-3-phosphate dehydrogenase Science. 259: 365-368. PMID 8420004 DOI: 10.1126/Science.8420004 |
0.445 |
|
1993 |
Valcárcel J, Singh R, Zamore PD, Green MR. The protein Sex-lethal antagonizes the splicing factor U2AF to regulate alternative splicing of transformer pre-mRNA. Nature. 362: 171-5. PMID 7680770 DOI: 10.1038/362171A0 |
0.517 |
|
1992 |
Reddy R, Singh R, Shimba S. Methylated cap structures in eukaryotic RNAs: structure, synthesis and functions. Pharmacology & Therapeutics. 54: 249-267. PMID 1465477 DOI: 10.1016/0163-7258(92)90002-H |
0.333 |
|
1990 |
Singh R, Gupta S, Reddy R. Capping of mammalian U6 small nuclear RNA in vitro is directed by a conserved stem-loop and AUAUAC sequence: conversion of a noncapped RNA into a capped RNA. Molecular and Cellular Biology. 10: 939-946. PMID 2304469 DOI: 10.1128/Mcb.10.3.939 |
0.39 |
|
1989 |
Singh R, Reddy R. Gamma-monomethyl phosphate: a cap structure in spliceosomal U6 small nuclear RNA. Proceedings of the National Academy of Sciences of the United States of America. 86: 8280-8283. PMID 2813391 DOI: 10.1073/Pnas.86.21.8280 |
0.331 |
|
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