James A. Gagnon - Publications

Affiliations: 
Harvard University, Cambridge, MA, United States 
Area:
Development

25/28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Ma 马漫修 M, Ramirez AD, Wang 王彤 T, Roberts RL, Harmon KE, Schoppik D, Sharma A, Kuang C, Goei SL, Gagnon JA, Zimmerman S, Tsai SQ, Reyon D, Joung JK, Aksay ERF, et al. Zebrafish Deficiency Impairs Retinal Patterning and Oculomotor Function. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 31685652 DOI: 10.1523/JNEUROSCI.1783-19.2019  0.96
2019 Wee CL, Nikitchenko M, Wang WC, Luks-Morgan SJ, Song E, Gagnon JA, Randlett O, Bianco IH, Lacoste AMB, Glushenkova E, Barrios JP, Schier AF, Kunes S, Engert F, Douglass AD. Zebrafish oxytocin neurons drive nocifensive behavior via brainstem premotor targets. Nature Neuroscience. PMID 31358991 DOI: 10.1038/s41593-019-0452-x  0.96
2018 Montague TG, Gagnon JA, Schier AF. Conserved regulation of Nodal-mediated left-right patterning in zebrafish and mouse. Development (Cambridge, England). PMID 30446628 DOI: 10.1242/dev.171090  0.96
2018 Raj B, Gagnon JA, Schier AF. Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT. Nature Protocols. PMID 30353175 DOI: 10.1038/s41596-018-0058-x  0.96
2018 Raj B, Wagner DE, McKenna A, Pandey S, Klein AM, Shendure J, Gagnon JA, Schier AF. Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. Nature Biotechnology. PMID 29608178 DOI: 10.1038/nbt.4103  0.96
2017 Rogers KW, Lord ND, Gagnon JA, Pauli A, Zimmerman S, Aksel DC, Reyon D, Tsai SQ, Joung JK, Schier AF. Nodal patterning without Lefty inhibitory feedback is functional but fragile. Elife. 6. PMID 29215332 DOI: 10.7554/eLife.28785  0.96
2017 Gagnon JA, Obbad K, Schier AF. Zebrafish nanog is primarily required in extraembryonic tissue. Development (Cambridge, England). PMID 29180571 DOI: 10.1242/dev.147793  0.96
2017 Freifeld L, Odstrcil I, Förster D, Ramirez A, Gagnon JA, Randlett O, Costa EK, Asano S, Celiker OT, Gao R, Martin-Alarcon DA, Reginato P, Dick C, Chen L, Schoppik D, et al. Expansion microscopy of zebrafish for neuroscience and developmental biology studies. Proceedings of the National Academy of Sciences of the United States of America. PMID 29162696 DOI: 10.1073/pnas.1706281114  0.44
2017 Norris ML, Pauli A, Gagnon JA, Lord ND, Rogers KW, Mosimann C, Zon LI, Schier AF. Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling. Elife. 6. PMID 29117894 DOI: 10.7554/eLife.22626  0.96
2017 Ciocanel MV, Kreiling JA, Gagnon JA, Mowry KL, Sandstede B. Analysis of Active Transport by Fluorescence Recovery after Photobleaching. Biophysical Journal. 112: 1714-1725. PMID 28445762 DOI: 10.1016/j.bpj.2017.02.042  0.6
2016 McKenna A, Findlay GM, Gagnon JA, Horwitz MS, Schier AF, Shendure J. Whole organism lineage tracing by combinatorial and cumulative genome editing. Science (New York, N.Y.). PMID 27229144 DOI: 10.1126/science.aaf7907  0.6
2016 Labun K, Montague TG, Gagnon JA, Thyme SB, Valen E. CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering. Nucleic Acids Research. PMID 27185894 DOI: 10.1093/nar/gkw398  0.96
2015 Powrie EA, Ciocanel V, Kreiling JA, Gagnon JA, Sandstede B, Mowry KL. Using in vivo imaging to measure RNA mobility in Xenopus laevis oocytes. Methods (San Diego, Calif.). PMID 26546269 DOI: 10.1016/j.ymeth.2015.11.003  0.6
2015 Merkle FT, Neuhausser WM, Santos D, Valen E, Gagnon JA, Maas K, Sandoe J, Schier AF, Eggan K. Efficient CRISPR-Cas9-Mediated Generation of Knockin Human Pluripotent Stem Cells Lacking Undesired Mutations at the Targeted Locus. Cell Reports. 11: 875-83. PMID 25937281 DOI: 10.1016/j.celrep.2015.04.007  0.6
2015 Liu J, Merkle FT, Gandhi AV, Gagnon JA, Woods IG, Chiu CN, Shimogori T, Schier AF, Prober DA. Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9. Development (Cambridge, England). 142: 1113-24. PMID 25725064 DOI: 10.1242/dev.117424  0.6
2014 Gagnon JA, Valen E, Thyme SB, Huang P, Ahkmetova L, Pauli A, Montague TG, Zimmerman S, Richter C, Schier AF. Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs. Plos One. 9: e98186. PMID 24873830 DOI: 10.1371/journal.pone.0098186  0.6
2014 Montague TG, Cruz JM, Gagnon JA, Church GM, Valen E. CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing. Nucleic Acids Research. 42: W401-7. PMID 24861617 DOI: 10.1093/nar/gku410  0.96
2014 Pauli A, Norris ML, Valen E, Chew GL, Gagnon JA, Zimmerman S, Mitchell A, Ma J, Dubrulle J, Reyon D, Tsai SQ, Joung JK, Saghatelian A, Schier AF. Toddler: an embryonic signal that promotes cell movement via Apelin receptors. Science (New York, N.Y.). 343: 1248636. PMID 24407481 DOI: 10.1126/science.1248636  0.6
2013 Gagnon JA, Kreiling JA, Powrie EA, Wood TR, Mowry KL. Directional transport is mediated by a Dynein-dependent step in an RNA localization pathway. Plos Biology. 11: e1001551. PMID 23637574 DOI: 10.1371/journal.pbio.1001551  0.6
2011 Gagnon JA, Mowry KL. Molecular motors: directing traffic during RNA localization. Critical Reviews in Biochemistry and Molecular Biology. 46: 229-39. PMID 21476929 DOI: 10.3109/10409238.2011.572861  0.6
2011 Gagnon JA, Mowry KL. Visualization of mRNA localization in Xenopus oocytes. Methods in Molecular Biology (Clifton, N.J.). 714: 71-82. PMID 21431735 DOI: 10.1007/978-1-61779-005-8_5  0.6
2010 Gagnon JA, Mowry KL. Visualizing RNA localization in Xenopus oocytes. Journal of Visualized Experiments : Jove. PMID 20075839 DOI: 10.3791/1704  0.6
2009 Gagnon JA, Mowry KL. VISIONS: the art of science. Molecular Reproduction and Development. 76: 1115. PMID 19834979 DOI: 10.1002/mrd.21104  0.6
2008 Messitt TJ, Gagnon JA, Kreiling JA, Pratt CA, Yoon YJ, Mowry KL. Multiple kinesin motors coordinate cytoplasmic RNA transport on a subpopulation of microtubules in Xenopus oocytes. Developmental Cell. 15: 426-36. PMID 18771961 DOI: 10.1016/j.devcel.2008.06.014  0.6
2008 Lewis RA, Gagnon JA, Mowry KL. PTB/hnRNP I is required for RNP remodeling during RNA localization in Xenopus oocytes. Molecular and Cellular Biology. 28: 678-86. PMID 18039852 DOI: 10.1128/MCB.00999-07  0.6
Low-probability matches
2019 Labun K, Guo X, Chavez A, Church G, Gagnon JA, Valen E. Accurate analysis of genuine CRISPR editing events with ampliCan. Genome Research. PMID 30850374 DOI: 10.1101/gr.244293.118  0.2
2019 McKenna A, Gagnon JA. Recording development with single cell dynamic lineage tracing. Development (Cambridge, England). 146. PMID 31249005 DOI: 10.1242/dev.169730  0.04
2020 Balla KM, Rice MC, Gagnon JA, Elde NC. Linking Virus Discovery to Immune Responses Visualized during Zebrafish Infections. Current Biology : Cb. PMID 32413307 DOI: 10.1016/j.cub.2020.04.031  0.01
Hide low-probability matches.