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Rebecca R. Gray, Ph.D. - Publications

Affiliations: 
2008 University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Physical Anthropology, Molecular Biology, Evolution and Development Biology, Medical and Forensic Anthropology
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Santos LA, Gray RR, Monteiro-Cunha JP, Rodrigues ES, Santos ES, Araujo TH, Gonçalves MS, Salemi M, Alcantara LC. Phylodynamics analysis of the Human Immunodeficiency Virus type 1 (HIV-1) envelope gene in mother and child pairs. Aids Research and Human Retroviruses. PMID 26123053 DOI: 10.1089/AID.2014.0352  0.303
2013 Gray RR, Tanaka Y, Takebe Y, Magiorkinis G, Buskell Z, Seeff L, Alter HJ, Pybus OG. Evolutionary analysis of hepatitis C virus gene sequences from 1953. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20130168. PMID 23938759 DOI: 10.1098/Rstb.2013.0168  0.374
2013 Pybus OG, Gray RR. Virology: The virus whose family expanded. Nature. 498: 310-1. PMID 23783626 DOI: 10.1038/498310B  0.326
2013 Mild M, Gray RR, Kvist A, Lemey P, Goodenow MM, Fenyö EM, Albert J, Salemi M, Esbjörnsson J, Medstrand P. High intrapatient HIV-1 evolutionary rate is associated with CCR5-to-CXCR4 coreceptor switch. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 19: 369-77. PMID 23672855 DOI: 10.1016/J.Meegid.2013.05.004  0.373
2012 Tatem AJ, Hemelaar J, Gray RR, Salemi M. Spatial accessibility and the spread of HIV-1 subtypes and recombinants. Aids (London, England). 26: 2351-60. PMID 22951637 DOI: 10.1097/Qad.0B013E328359A904  0.329
2012 Gray RR, Salemi M. Integrative molecular phylogeography in the context of infectious diseases on the human-animal interface. Parasitology. 139: 1939-51. PMID 22931895 DOI: 10.1017/S0031182012001102  0.319
2012 Pybus OG, Suchard MA, Lemey P, Bernardin FJ, Rambaut A, Crawford FW, Gray RR, Arinaminpathy N, Stramer SL, Busch MP, Delwart EL. Unifying the spatial epidemiology and molecular evolution of emerging epidemics. Proceedings of the National Academy of Sciences of the United States of America. 109: 15066-71. PMID 22927414 DOI: 10.1073/Pnas.1206598109  0.312
2012 Norström MM, Prosperi MC, Gray RR, Karlsson AC, Salemi M. PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences. Evolutionary Bioinformatics Online. 8: 261-9. PMID 22745529 DOI: 10.4137/Ebo.S9738  0.351
2012 Gray RR, Strickland SL, Veras NM, Goodenow MM, Pybus OG, Lemon SM, Fried MW, Nelson DR, Salemi M. Unexpected maintenance of hepatitis C viral diversity following liver transplantation. Journal of Virology. 86: 8432-9. PMID 22623804 DOI: 10.1128/Jvi.00749-12  0.304
2012 Gray RR, Salemi M, Klenerman P, Pybus OG. A new evolutionary model for hepatitis C virus chronic infection. Plos Pathogens. 8: e1002656. PMID 22570609 DOI: 10.1371/Journal.Ppat.1002656  0.347
2012 Akrim M, Lemrabet S, Elharti E, Gray RR, Tardy JC, Cook RL, Salemi M, Andre P, Azarian T, Aouad RE. HIV-1 Subtype distribution in morocco based on national sentinel surveillance data 2004-2005. Aids Research and Therapy. 9: 5. PMID 22333070 DOI: 10.1186/1742-6405-9-5  0.333
2012 Strickland SL, Gray RR, Lamers SL, Burdo TH, Huenink E, Nolan DJ, Nowlin B, Alvarez X, Midkiff CC, Goodenow MM, Williams K, Salemi M. Efficient transmission and persistence of lowfrequency SIVmac251 variants in CD8-depleted rhesus macaques with different neuropathology Journal of General Virology. 93: 925-938. PMID 22302881 DOI: 10.1099/Vir.0.039586-0  0.324
2011 Prosperi MC, Ciccozzi M, Fanti I, Saladini F, Pecorari M, Borghi V, Di Giambenedetto S, Bruzzone B, Capetti A, Vivarelli A, Rusconi S, Re MC, Gismondo MR, Sighinolfi L, Gray RR, et al. A novel methodology for large-scale phylogeny partition. Nature Communications. 2: 321. PMID 21610724 DOI: 10.1038/Ncomms1325  0.319
2011 Gray RR, Parker J, Lemey P, Salemi M, Katzourakis A, Pybus OG. The mode and tempo of hepatitis C virus evolution within and among hosts Bmc Evolutionary Biology. 11. PMID 21595904 DOI: 10.1186/1471-2148-11-131  0.332
2011 Strickland SL, Gray RR, Lamers SL, Burdo TH, Huenink E, Nolan DJ, Nowlin B, Alvarez X, Midkiff CC, Goodenow MM, Williams K, Salemi M. Significant genetic heterogeneity of the SIVmac251 viral swarm derived from different sources Aids Research and Human Retroviruses. 27: 1327-1332. PMID 21524235 DOI: 10.1089/Aid.2011.0100  0.405
2011 Véras NM, Santoro MM, Gray RR, Tatem AJ, Lo Presti A, Olearo F, Cappelli G, Colizzi V, Takou D, Torimiro J, Russo G, Callegaro A, Salpini R, D'Arrigo R, Perno CF, et al. Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and African patients living in Italy. Aids Research and Human Retroviruses. 27: 1173-82. PMID 21453131 DOI: 10.1089/Aid.2010.0333  0.372
2011 Véras NM, Gray RR, Brígido LF, Rodrigues R, Salemi M. High-resolution phylogenetics and phylogeography of human immunodeficiency virus type 1 subtype C epidemic in South America. The Journal of General Virology. 92: 1698-709. PMID 21450946 DOI: 10.1099/Vir.0.028951-0  0.396
2011 Ciccozzi M, Ciccaglione A, Presti AL, Yalcinkaya T, Taskan ZP, Equestre M, Costantino A, Bruni R, Ebranati E, Salemi M, Gray R, Rezza G, Galli M, Zehender G. Reconstruction of the evolutionary dynamics of the hepatitis C virus 1b epidemic in Turkey. Infection, Genetics and Evolution. 11: 863-868. PMID 21324382 DOI: 10.1016/J.Meegid.2011.02.006  0.345
2011 Gray RR, Salemi M, Lowe A, Nakamura KJ, Decker WD, Sinkala M, Kankasa C, Mulligan CJ, Thea DM, Kuhn L, Aldrovandi G, Goodenow MM. Multiple independent lineages of HIV-1 persist in breast milk and plasma. Aids (London, England). 25: 143-52. PMID 21173592 DOI: 10.1097/Qad.0B013E328340Fdaf  0.569
2011 Gray RR, Tatem AJ, Johnson JA, Alekseyenko AV, Pybus OG, Suchard MA, Salemi M. Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework. Molecular Biology and Evolution. 28: 1593-603. PMID 21112962 DOI: 10.1093/Molbev/Msq319  0.339
2011 Liu J, Zhou Z, Hodgkinson CA, Yuan Q, Shen PH, Mulligan CJ, Wang A, Gray RR, Roy A, Virkkunen M, Goldman D, Enoch MA. Haplotype-Based Study of the Association of Alcohol-Metabolizing Genes With Alcohol Dependence in Four Independent Populations Alcoholism: Clinical and Experimental Research. 35: 304-316. PMID 21083667 DOI: 10.1111/J.1530-0277.2010.01346.X  0.564
2011 Lamers SL, Gray RR, Salemi M, Huysentruyt LC, McGrath MS. HIV-1 phylogenetic analysis shows HIV-1 transits through the meninges to brain and peripheral tissues. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 31-7. PMID 21055482 DOI: 10.1016/J.Meegid.2010.10.016  0.344
2011 Gray RR, Pybus OG, Salemi M. Measuring the temporal structure in serially sampled phylogenies Methods in Ecology and Evolution. 2: 437-445. DOI: 10.1111/J.2041-210X.2011.00102.X  0.32
2010 Lamers SL, Salemi M, Galligan DC, Morris A, Gray R, Fogel G, Zhao L, McGrath MS. Human immunodeficiency virus-1 evolutionary patterns associated with pathogenic processes in the brain Journal of Neurovirology. 16: 230-241. PMID 20367240 DOI: 10.3109/13550281003735709  0.339
2010 Gray RR, Veras NMC, Santos LA, Salemi M. Evolutionary characterization of the West Nile Virus complete genome Molecular Phylogenetics and Evolution. 56: 195-200. PMID 20102743 DOI: 10.1016/J.Ympev.2010.01.019  0.388
2009 Salemi M, Lamers SL, Huysentruyt LC, Galligan D, Gray RR, Morris A, McGrath MS. Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma. Plos One. 4: e8153. PMID 19997510 DOI: 10.1371/Journal.Pone.0008153  0.361
2009 Gray RR, Tatem AJ, Lamers S, Hou W, Laeyendecker O, Serwadda D, Sewankambo N, Gray RH, Wawer M, Quinn TC, Goodenow MM, Salemi M. Spatial phylodynamics of HIV-1 epidemic emergence in east Africa. Aids (London, England). 23: F9-F17. PMID 19644346 DOI: 10.1097/Qad.0B013E32832Faf61  0.38
2009 Switzer WM, Salemi M, Qari SH, Jia H, Gray RR, Katzourakis A, Marriott SJ, Pryor KN, Wolfe ND, Burke DS, Folks TM, Heneine W. Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4. Retrovirology. 6: 9. PMID 19187529 DOI: 10.1186/1742-4690-6-9  0.36
2008 Salemi M, Gray RR, Goodenow MM. An exploratory algorithm to identify intra-host recombinant viral sequences. Molecular Phylogenetics and Evolution. 49: 618-28. PMID 18801446 DOI: 10.1016/J.Ympev.2008.08.017  0.387
2007 Salemi M, Burkhardt BR, Gray RR, Ghaffari G, Sleasman JW, Goodenow MM. Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies. Plos One. 2: e950. PMID 17895991 DOI: 10.1371/Journal.Pone.0000950  0.326
2007 Clarimon J, Gray RR, Williams LN, Enoch MA, Robin RW, Albaugh B, Singleton A, Goldman D, Mulligan CJ. Linkage disequilibrium and association analysis of alpha-synuclein and alcohol and drug dependence in two American Indian populations. Alcoholism, Clinical and Experimental Research. 31: 546-54. PMID 17374033 DOI: 10.1111/J.1530-0277.2007.00338.X  0.528
2006 Tarskaia L, Gray RR, Burkley B, Mulligan CJ. Genetic variation at the mitochondrial DNA 9-bp repeat locus in the Sakha of Siberia Human Biology. 78: 179-198. PMID 17036925 DOI: 10.1353/Hub.2006.0038  0.58
2006 Gray RR, Mulligan CJ, Molini BJ, Sun ES, Giacani L, Godornes C, Kitchen A, Lukehart SA, Centurion-Lara A. Molecular evolution of the tprC, D, I, K, G, and J genes in the pathogenic genus Treponema. Molecular Biology and Evolution. 23: 2220-33. PMID 16926243 DOI: 10.1093/Molbev/Msl092  0.626
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