| Year |
Citation |
Score |
| 2023 |
Carvalho J, Morales HE, Faria R, Butlin RK, Sousa VC. Integrating Pool-seq uncertainties into demographic inference. Molecular Ecology Resources. PMID 37475177 DOI: 10.1111/1755-0998.13834 |
0.392 |
|
| 2022 |
Nouhaud P, Martin SH, Portinha B, Sousa VC, Kulmuni J. Rapid and predictable genome evolution across three hybrid ant populations. Plos Biology. 20: e3001914. PMID 36538502 DOI: 10.1371/journal.pbio.3001914 |
0.43 |
|
| 2022 |
Portinha B, Avril A, Bernasconi C, Helanterä H, Monaghan J, Seifert B, Sousa VC, Kulmuni J, Nouhaud P. Whole-genome analysis of multiple wood ant population pairs supports similar speciation histories, but different degrees of gene flow, across their European ranges. Molecular Ecology. PMID 35460311 DOI: 10.1111/mec.16481 |
0.445 |
|
| 2022 |
Bendall EE, Bagley RK, Sousa VC, Linnen CR. Faster-haplodiploid evolution under divergence-with-gene-flow: Simulations and empirical data from pine-feeding hymenopterans. Molecular Ecology. PMID 35231148 DOI: 10.1111/mec.16410 |
0.475 |
|
| 2021 |
Mendes SL, Machado MP, Coelho MM, Sousa VC. Genomic data and multi-species demographic modelling uncover past hybridization between currently allopatric freshwater species. Heredity. PMID 34462578 DOI: 10.1038/s41437-021-00466-1 |
0.372 |
|
| 2021 |
Excofffier L, Marchi N, Marques DA, Matthey-Doret R, Gouy A, Sousa VC. fastsimcoal2: demographic inference under complex evolutionary scenarios. Bioinformatics (Oxford, England). PMID 34164653 DOI: 10.1093/bioinformatics/btab468 |
0.723 |
|
| 2021 |
Marques DA, Lucek K, Sousa VC, Excoffier L, Seehausen O. Reply to "Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin". Nature Communications. 12: 2807. PMID 33990586 DOI: 10.1038/s41467-021-23096-x |
0.723 |
|
| 2021 |
Clemente F, Unterländer M, Dolgova O, Amorim CEG, Coroado-Santos F, Neuenschwander S, Ganiatsou E, Cruz Dávalos DI, Anchieri L, Michaud F, Winkelbach L, Blöcher J, Arizmendi Cárdenas YO, Sousa da Mota B, Kalliga E, ... ... Sousa VC, et al. The genomic history of the Aegean palatial civilizations. Cell. PMID 33930288 DOI: 10.1016/j.cell.2021.03.039 |
0.658 |
|
| 2019 |
Marques DA, Lucek K, Sousa VC, Excoffier L, Seehausen O. Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature Communications. 10: 4240. PMID 31534121 DOI: 10.1038/S41467-019-12182-W |
0.802 |
|
| 2019 |
Sikora M, Pitulko VV, Sousa VC, Allentoft ME, Vinner L, Rasmussen S, Margaryan A, de Barros Damgaard P, de la Fuente C, Renaud G, Yang MA, Fu Q, Dupanloup I, Giampoudakis K, Nogués-Bravo D, et al. The population history of northeastern Siberia since the Pleistocene. Nature. PMID 31168093 DOI: 10.1038/S41586-019-1279-Z |
0.796 |
|
| 2019 |
Kuhlwilm M, Han S, Sousa VC, Excoffier L, Marques-Bonet T. Author Correction: Ancient admixture from an extinct ape lineage into bonobos. Nature Ecology & Evolution. PMID 31089261 DOI: 10.1038/S41559-019-0919-X |
0.455 |
|
| 2019 |
Kuhlwilm M, Han S, Sousa VC, Excoffier L, Marques-Bonet T. Ancient admixture from an extinct ape lineage into bonobos. Nature Ecology & Evolution. PMID 31036897 DOI: 10.1038/S41559-019-0881-7 |
0.704 |
|
| 2019 |
Seabra SG, Silva SE, Nunes VL, Sousa VC, Martins J, Marabuto E, Rodrigues ASB, Pina-Martins F, Laurentino TG, Rebelo MT, Figueiredo E, Paulo OS. Genomic signatures of introgression between commercial and native bumblebees, , in western Iberian Peninsula-Implications for conservation and trade regulation. Evolutionary Applications. 12: 679-691. PMID 30976302 DOI: 10.1111/eva.12732 |
0.395 |
|
| 2019 |
Seabra SG, Fragata I, Antunes MA, Faria GS, Santos MA, Sousa VC, Simões P, Matos M. Different Genomic Changes Underlie Adaptive Evolution in Populations of Contrasting History. Molecular Biology and Evolution. PMID 30958887 DOI: 10.1093/molbev/msz076 |
0.391 |
|
| 2018 |
Hey J, Chung Y, Sethuraman A, Lachance J, Tishkoff S, Sousa VC, Wang Y. Phylogeny Estimation by Integration over Isolation with Migration Models. Molecular Biology and Evolution. PMID 30137463 DOI: 10.1093/Molbev/Msy162 |
0.804 |
|
| 2018 |
Pfeifer SP, Laurent S, Sousa VC, Linnen CR, Foll M, Excoffier L, Hoekstra HE, Jensen JD. The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. Molecular Biology and Evolution. PMID 29346646 DOI: 10.1093/Molbev/Msy004 |
0.736 |
|
| 2017 |
Seabra SG, Fragata I, Antunes MA, Faria GS, Santos MA, Sousa VC, Simões P, Matos M. Different genomic changes underlie adaptive evolution in populations of contrasting history. Molecular Biology and Evolution. PMID 29029198 DOI: 10.1093/molbev/msx247 |
0.478 |
|
| 2017 |
Sikora M, Seguin-Orlando A, Sousa VC, Albrechtsen A, Korneliussen T, Ko A, Rasmussen S, Dupanloup I, Nigst PR, Bosch MD, Renaud G, Allentoft ME, Margaryan A, Vasilyev SV, Veselovskaya EV, et al. Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science (New York, N.Y.). PMID 28982795 DOI: 10.1126/Science.Aao1807 |
0.749 |
|
| 2016 |
Bagley RK, Sousa VC, Niemiller ML, Linnen CR. History, geography, and host use shape genome-wide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei). Molecular Ecology. PMID 28028850 DOI: 10.1111/Mec.13972 |
0.416 |
|
| 2016 |
de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, et al. Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science (New York, N.Y.). 354: 477-481. PMID 27789843 DOI: 10.1126/Science.Aag2602 |
0.796 |
|
| 2016 |
Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, et al. A genomic history of Aboriginal Australia. Nature. PMID 27654914 DOI: 10.1038/Nature18299 |
0.779 |
|
| 2016 |
Meier JI, Sousa VC, Marques DA, Selz OM, Wagner CE, Excoffier L, Seehausen O. Demographic modeling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology. PMID 27613570 DOI: 10.1111/Mec.13838 |
0.745 |
|
| 2016 |
Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, et al. Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature Communications. 7: 11693. PMID 27243207 DOI: 10.1038/Ncomms11693 |
0.663 |
|
| 2015 |
Alves I, Arenas M, Currat M, Hanulova AS, Sousa VC, Ray N, Excoffier L. Long distance dispersal shaped patterns of human genetic diversity in Eurasia. Molecular Biology and Evolution. PMID 26637555 DOI: 10.1093/Molbev/Msv332 |
0.765 |
|
| 2015 |
Laurent S, Pfeifer SP, Settles ML, Hunter SS, Hardwick KM, Ormond L, Sousa VC, Jensen JD, Rosenblum EB. The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards. Molecular Ecology. PMID 26363411 DOI: 10.1111/Mec.13385 |
0.422 |
|
| 2014 |
Sousa V, Peischl S, Excoffier L. Impact of range expansions on current human genomic diversity. Current Opinion in Genetics & Development. 29: 22-30. PMID 25156518 DOI: 10.1016/J.Gde.2014.07.007 |
0.8 |
|
| 2013 |
Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M. Robust demographic inference from genomic and SNP data. Plos Genetics. 9: e1003905. PMID 24204310 DOI: 10.1371/Journal.Pgen.1003905 |
0.801 |
|
| 2013 |
Sousa V, Hey J. Understanding the origin of species with genome-scale data: modelling gene flow. Nature Reviews. Genetics. 14: 404-14. PMID 23657479 DOI: 10.1038/nrg3446 |
0.649 |
|
| 2013 |
Sousa VC, Carneiro M, Ferrand N, Hey J. Identifying loci under selection against gene flow in isolation-with-migration models. Genetics. 194: 211-33. PMID 23457232 DOI: 10.1534/genetics.113.149211 |
0.618 |
|
| 2012 |
Salmona J, Salamolard M, Fouillot D, Ghestemme T, Larose J, Centon JF, Sousa V, Dawson DA, Thebaud C, Chikhi L. Signature of a pre-human population decline in the critically endangered Reunion Island endemic forest bird Coracina newtoni. Plos One. 7: e43524. PMID 22916272 DOI: 10.1371/journal.pone.0043524 |
0.469 |
|
| 2012 |
Rasteiro R, Bouttier PA, Sousa VC, Chikhi L. Investigating sex-biased migration during the Neolithic transition in Europe, using an explicit spatial simulation framework. Proceedings. Biological Sciences / the Royal Society. 279: 2409-16. PMID 22298848 DOI: 10.1098/rspb.2011.2323 |
0.345 |
|
| 2012 |
Sousa VC, Beaumont MA, Fernandes P, Coelho MM, Chikhi L. Population divergence with or without admixture: selecting models using an ABC approach. Heredity. 108: 521-30. PMID 22146980 DOI: 10.1038/hdy.2011.116 |
0.476 |
|
| 2011 |
Sousa VC, Grelaud A, Hey J. On the nonidentifiability of migration time estimates in isolation with migration models. Molecular Ecology. 20: 3956-62. PMID 22039614 DOI: 10.1111/j.1365-294X.2011.05247.x |
0.55 |
|
| 2010 |
Bray TC, Sousa VC, Parreira B, Bruford MW, Chikhi L. 2BAD: an application to estimate the parental contributions during two independent admixture events. Molecular Ecology Resources. 10: 538-41. PMID 21565053 DOI: 10.1111/J.1755-0998.2009.02766.X |
0.347 |
|
| 2010 |
Chikhi L, Sousa VC, Luisi P, Goossens B, Beaumont MA. The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes. Genetics. 186: 983-95. PMID 20739713 DOI: 10.1534/genetics.110.118661 |
0.423 |
|
| 2010 |
Sousa V, Penha F, Pala I, Chikhi L, Coelho MM. Conservation genetics of a critically endangered Iberian minnow: evidence of population decline and extirpations Animal Conservation. 13: 162-171. DOI: 10.1111/J.1469-1795.2009.00317.X |
0.422 |
|
| 2009 |
Parreira B, Trussart M, Sousa V, Hudson R, Chikhi L. SPAms: A user-friendly software to simulate population genetics data under complex demographic models. Molecular Ecology Resources. 9: 749-53. PMID 21564735 DOI: 10.1111/J.1755-0998.2009.02533.X |
0.372 |
|
| 2009 |
Sousa VC, Fritz M, Beaumont MA, Chikhi L. Approximate bayesian computation without summary statistics: the case of admixture. Genetics. 181: 1507-19. PMID 19189952 DOI: 10.1534/genetics.108.098129 |
0.336 |
|
| 2008 |
Olivieri GL, Sousa V, Chikhi L, Radespiel U. From genetic diversity and structure to conservation: Genetic signature of recent population declines in three mouse lemur species (Microcebus spp.) Biological Conservation. 141: 1257-1271. DOI: 10.1016/J.BIOCON.2008.02.025 |
0.398 |
|
| 2007 |
Sousa V, Penha F, Collares-Pereira MJ, Chikhi L, Coelho MM. Genetic structure and signature of population decrease in the critically endangered freshwater cyprinid Chondrostoma lusitanicum Conservation Genetics. 9: 791-805. DOI: 10.1007/s10592-007-9399-7 |
0.382 |
|
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