| Year |
Citation |
Score |
| 2023 |
Simirenko L, Cheng JF, Blaby I. gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. Frontiers in Bioengineering and Biotechnology. 11: 1217811. PMID 37720317 DOI: 10.3389/fbioe.2023.1217811 |
0.361 |
|
| 2021 |
Ke J, Robinson D, Wu ZY, Kuftin A, Louie K, Kosina S, Northen T, Cheng JF, Yoshikuni Y. CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria. Cell Chemical Biology. PMID 34508657 DOI: 10.1016/j.chembiol.2021.08.009 |
0.427 |
|
| 2020 |
Liu H, Robinson DS, Wu ZY, Kuo R, Yoshikuni Y, Blaby IK, Cheng JF. Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems. Plos One. 15: e0241867. PMID 33147260 DOI: 10.1371/journal.pone.0241867 |
0.312 |
|
| 2020 |
Chen YJ, He GC, Cheng JF, Lee YT, Hung YH, Chen WH, Huang YT, Liu PY. Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources. Comparative Immunology, Microbiology and Infectious Diseases. 73: 101545. PMID 32927298 DOI: 10.1016/j.cimid.2020.101545 |
0.341 |
|
| 2020 |
Bowman EK, Deaner M, Cheng JF, Evans R, Oberortner E, Yoshikuni Y, Alper HS. Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach. Proceedings of the National Academy of Sciences of the United States of America. PMID 32690674 DOI: 10.1073/Pnas.2007413117 |
0.361 |
|
| 2020 |
Miyata M, Gillemans N, Hockman D, Demmers JA, Cheng JF, Hou J, Salminen M, Fisher C, Taylor S, Gibbons RJ, Ganis JJ, Zon LI, Grosveld F, Mulugeta E, Sauka-Spengler T, et al. An evolutionary ancient mechanism for regulation of hemoglobin expression in vertebrate red cells. Blood. PMID 32396940 DOI: 10.1182/Blood.2020004826 |
0.446 |
|
| 2019 |
Sevim V, Lee J, Egan R, Clum A, Hundley H, Lee J, Everroad RC, Detweiler AM, Bebout BM, Pett-Ridge J, Göker M, Murray AE, Lindemann SR, Klenk HP, O'Malley R, ... ... Cheng JF, et al. Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies. Scientific Data. 6: 285. PMID 31772173 DOI: 10.1038/S41597-019-0287-Z |
0.331 |
|
| 2019 |
Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, ... ... Cheng JF, et al. CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria. Nature Microbiology. PMID 31611640 DOI: 10.1038/S41564-019-0573-8 |
0.301 |
|
| 2018 |
Wu ZY, Ho SP, Cheng JF, Tung KC, Hong YK, Chen SY, Menzer A, Chen YJ, Huang YT, Liu PY. Whole-genome characterization of Shewanella algae strain SYT3 isolated from seawater reveals insight into hemolysis. Future Microbiology. PMID 30477345 DOI: 10.2217/fmb-2018-0267 |
0.308 |
|
| 2018 |
Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng JF, Woyke T, Pelin A, Henrissat B, Reynolds NK, Benny GL, Smith ME, James TY, Grigoriev IV. Leveraging single-cell genomics to expand the fungal tree of life. Nature Microbiology. PMID 30297742 DOI: 10.1038/S41564-018-0261-0 |
0.324 |
|
| 2017 |
Peng Z, Froula JL, Cheng JF. Preparing Fosmid Mate-Paired Libraries Using Cre-LoxP Recombination. Methods in Molecular Biology (Clifton, N.J.). 1642: 263-284. PMID 28815506 DOI: 10.1007/978-1-4939-7169-5_17 |
0.33 |
|
| 2016 |
Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T. Next generation sequencing data of a defined microbial mock community. Scientific Data. 3: 160081. PMID 27673566 DOI: 10.1038/Sdata.2016.81 |
0.304 |
|
| 2016 |
Singer E, Bushnell B, Coleman-Derr D, Bowman B, Bowers RM, Levy A, Gies EA, Cheng JF, Copeland A, Klenk HP, Hallam SJ, Hugenholtz P, Tringe SG, Woyke T. High-resolution phylogenetic microbial community profiling. The Isme Journal. PMID 26859772 DOI: 10.1038/Ismej.2015.249 |
0.306 |
|
| 2015 |
Shetty AR, de Gannes V, Obi CC, Lucas S, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Peters L, Mikhailova N, Teshima H, Han C, Tapia R, Land M, Hauser LJ, et al. Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4. Standards in Genomic Sciences. 10: 55. PMID 26380642 DOI: 10.1186/s40793-015-0041-x |
0.449 |
|
| 2014 |
Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, et al. Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. Standards in Genomic Sciences. 9: 10. PMID 25780503 DOI: 10.1186/1944-3277-9-10 |
0.325 |
|
| 2014 |
Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, et al. Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring. Standards in Genomic Sciences. 9: 1105-17. PMID 25197486 DOI: 10.4056/Sigs.3016383 |
0.372 |
|
| 2014 |
Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences. 9: 1076-88. PMID 25197484 DOI: 10.4056/Sigs.5138968 |
0.417 |
|
| 2014 |
Saha NR, Ota T, Litman GW, Hansen J, Parra Z, Hsu E, Buonocore F, Canapa A, Cheng JF, Amemiya CT. Genome complexity in the coelacanth is reflected in its adaptive immune system. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 322: 438-63. PMID 24464682 DOI: 10.1002/Jez.B.22558 |
0.423 |
|
| 2013 |
Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, et al. Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl. Standards in Genomic Sciences. 9: 83-92. PMID 24501647 DOI: 10.4056/Sigs.4338002 |
0.326 |
|
| 2013 |
Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio. Standards in Genomic Sciences. 9: 57-70. PMID 24501645 DOI: 10.4056/Sigs.4237901 |
0.318 |
|
| 2013 |
Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, et al. Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva. Standards in Genomic Sciences. 8: 228-38. PMID 23991255 DOI: 10.4056/Sigs.3617113 |
0.367 |
|
| 2013 |
Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, et al. Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)). Standards in Genomic Sciences. 8: 177-87. PMID 23991250 DOI: 10.4056/Sigs.3637201 |
0.354 |
|
| 2013 |
Liolos K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Pagani I, Ivanova N, et al. Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift. Standards in Genomic Sciences. 8: 165-76. PMID 23991249 DOI: 10.4056/Sigs.3607108 |
0.314 |
|
| 2013 |
Abt B, Göker M, Scheuner C, Han C, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, et al. Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Standards in Genomic Sciences. 8: 88-105. PMID 23961314 DOI: 10.4056/Sigs.3096473 |
0.307 |
|
| 2013 |
Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)). Standards in Genomic Sciences. 8: 47-57. PMID 23961311 DOI: 10.4056/Sigs.3547050 |
0.374 |
|
| 2013 |
Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C, Cheng JF, Tapia R, Goodwin LA, Bruce D, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, et al. High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)). Standards in Genomic Sciences. 8: 37-46. PMID 23961310 DOI: 10.4056/Sigs.3537045 |
0.341 |
|
| 2013 |
Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)). Standards in Genomic Sciences. 8: 26-36. PMID 23961309 DOI: 10.4056/Sigs.3527032 |
0.361 |
|
| 2013 |
Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, et al. Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug). Standards in Genomic Sciences. 8: 15-25. PMID 23961308 DOI: 10.4056/Sigs.3507020 |
0.377 |
|
| 2012 |
Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)). Standards in Genomic Sciences. 7: 120-30. PMID 23450211 DOI: 10.4056/Sigs.3296896 |
0.345 |
|
| 2012 |
Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)). Standards in Genomic Sciences. 7: 107-19. PMID 23450183 DOI: 10.4056/Sigs.3216895 |
0.36 |
|
| 2012 |
Neupane S, Finlay RD, Kyrpides NC, Goodwin L, Alström S, Lucas S, Land M, Han J, Lapidus A, Cheng JF, Bruce D, Pitluck S, Peters L, Ovchinnikova G, Held B, et al. Complete genome sequence of the plant-associated Serratia plymuthica strain AS13. Standards in Genomic Sciences. 7: 22-30. PMID 23450001 DOI: 10.4056/sigs.2966299 |
0.329 |
|
| 2012 |
Spring S, Visser M, Lu M, Copeland A, Lapidus A, Lucas S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Ivanova N, Land M, Hauser L, Larimer F, et al. Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T)). Standards in Genomic Sciences. 7: 304-19. PMID 23408247 DOI: 10.4056/sigs.3226659 |
0.414 |
|
| 2012 |
Anderson I, Munk C, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)). Standards in Genomic Sciences. 7: 210-20. PMID 23408178 DOI: 10.4056/Sigs.3117229 |
0.325 |
|
| 2012 |
Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, et al. Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)). Standards in Genomic Sciences. 6: 1-13. PMID 23407703 DOI: 10.4056/Sigs.2736042 |
0.332 |
|
| 2012 |
Lucas S, Han J, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Peters L, Mikhailova N, Teshima H, Detter JC, Han C, Tapia R, Land M, Hauser L, Kyrpides NC, et al. Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3. Journal of Bacteriology. 194: 5974-5. PMID 23045491 DOI: 10.1128/Jb.01430-12 |
0.315 |
|
| 2012 |
Crow KD, Smith CD, Cheng JF, Wagner GP, Amemiya CT. An independent genome duplication inferred from Hox paralogs in the American paddlefish--a representative basal ray-finned fish and important comparative reference. Genome Biology and Evolution. 4: 937-53. PMID 22851613 DOI: 10.1093/gbe/evs067 |
0.564 |
|
| 2012 |
Copeland A, Zeytun A, Yassawong M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Mavromatis K, Liolios K, Pagani I, et al. Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). Standards in Genomic Sciences. 6: 240-50. PMID 22768367 DOI: 10.4056/Sigs.2756060 |
0.314 |
|
| 2012 |
Göker M, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)). Standards in Genomic Sciences. 6: 230-9. PMID 22768366 DOI: 10.4056/Sigs.2726028 |
0.358 |
|
| 2012 |
Mavromatis K, Chertkov O, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Bruce D, Goodwin LA, Pitluck S, Huntemann M, Liolios K, et al. Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). Standards in Genomic Sciences. 6: 210-9. PMID 22768364 DOI: 10.4056/Sigs.2816096 |
0.332 |
|
| 2012 |
Huntemann M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, et al. Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)). Standards in Genomic Sciences. 6: 185-93. PMID 22768362 DOI: 10.4056/Sigs.2786069 |
0.367 |
|
| 2012 |
Anderson I, Held B, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)). Standards in Genomic Sciences. 6: 174-84. PMID 22768361 DOI: 10.4056/Sigs.2746047 |
0.343 |
|
| 2012 |
Neupane S, Finlay RD, Alström S, Goodwin L, Kyrpides NC, Lucas S, Lapidus A, Bruce D, Pitluck S, Peters L, Ovchinnikova G, Chertkov O, Han J, Han C, Tapia R, ... ... Cheng JF, et al. Complete genome sequence of Serratia plymuthica strain AS12. Standards in Genomic Sciences. 6: 165-73. PMID 22768360 DOI: 10.4056/sigs.2705996 |
0.331 |
|
| 2012 |
Anderson I, Saunders E, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T)). Standards in Genomic Sciences. 6: 155-64. PMID 22768359 DOI: 10.4056/Sigs.2665915 |
0.369 |
|
| 2012 |
Copeland A, Zhang X, Misra M, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, et al. Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)). Standards in Genomic Sciences. 6: 145-54. PMID 22768358 DOI: 10.4056/Sigs.2475579 |
0.385 |
|
| 2012 |
Han C, Kotsyurbenko O, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)). Standards in Genomic Sciences. 6: 94-103. PMID 22675602 DOI: 10.4056/Sigs.2456004 |
0.324 |
|
| 2012 |
Anderson I, Tindall BJ, Rohde M, Lucas S, Han J, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Peters L, Pati A, Mikhailova N, Pagani I, Teshima H, Han C, et al. Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)). Standards in Genomic Sciences. 6: 31-42. PMID 22675596 DOI: 10.4056/sigs.2505605 |
0.335 |
|
| 2012 |
Copeland A, Gu W, Yasawong M, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin LA, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney. Standards in Genomic Sciences. 6: 21-30. PMID 22675595 DOI: 10.4056/Sigs.2435521 |
0.315 |
|
| 2011 |
Göker M, Daligault H, Mwirichia R, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Standards in Genomic Sciences. 5: 407-15. PMID 22675590 DOI: 10.4056/Sigs.2465574 |
0.365 |
|
| 2011 |
Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, et al. Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)). Standards in Genomic Sciences. 5: 398-406. PMID 22675589 DOI: 10.4056/Sigs.2344929 |
0.334 |
|
| 2011 |
Klenk HP, Lapidus A, Chertkov O, Copeland A, Del Rio TG, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Bruce D, Goodwin L, Pitluck S, Pati A, et al. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Standards in Genomic Sciences. 5: 121-34. PMID 22180816 DOI: 10.4056/Sigs.2144922 |
0.307 |
|
| 2011 |
Chang YJ, Land M, Hauser L, Chertkov O, Del Rio TG, Nolan M, Copeland A, Tice H, Cheng JF, Lucas S, Han C, Goodwin L, Pitluck S, Ivanova N, Ovchinikova G, et al. Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). Standards in Genomic Sciences. 5: 97-111. PMID 22180814 DOI: 10.4056/Sigs.2114901 |
0.359 |
|
| 2011 |
Lapidus A, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, et al. Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10). Standards in Genomic Sciences. 5: 86-96. PMID 22180813 DOI: 10.4056/Sigs.2235024 |
0.357 |
|
| 2011 |
Anderson I, Risso C, Holmes D, Lucas S, Copeland A, Lapidus A, Cheng JF, Bruce D, Goodwin L, Pitluck S, Saunders E, Brettin T, Detter JC, Han C, Tapia R, et al. Complete genome sequence of Ferroglobus placidus AEDII12DO. Standards in Genomic Sciences. 5: 50-60. PMID 22180810 DOI: 10.4056/Sigs.2225018 |
0.383 |
|
| 2011 |
Pati A, Gronow S, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20). Standards in Genomic Sciences. 5: 41-9. PMID 22180809 DOI: 10.4056/Sigs.2164949 |
0.372 |
|
| 2011 |
Liolios K, Sikorski J, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Ivanova N, et al. Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113). Standards in Genomic Sciences. 5: 30-40. PMID 22180808 DOI: 10.4056/Sigs.2154937 |
0.344 |
|
| 2011 |
Woyke T, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). Standards in Genomic Sciences. 5: 21-9. PMID 22180807 DOI: 10.4056/Sigs.2124912 |
0.379 |
|
| 2011 |
Anderson I, Wirth R, Lucas S, Copeland A, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Davenport K, Detter JC, Han C, Tapia R, Land M, Hauser L, Pati A, et al. Complete genome sequence of Staphylothermus hellenicus P8. Standards in Genomic Sciences. 5: 12-20. PMID 22180806 DOI: 10.4056/sigs.2054696 |
0.383 |
|
| 2011 |
Boden R, Cunliffe M, Scanlan J, Moussard H, Kits KD, Klotz MG, Jetten MS, Vuilleumier S, Han J, Peters L, Mikhailova N, Teshima H, Tapia R, Kyrpides N, Ivanova N, ... ... Cheng JF, et al. Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09. Journal of Bacteriology. 193: 7001-2. PMID 22123758 DOI: 10.1128/Jb.06267-11 |
0.342 |
|
| 2011 |
Göker M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, et al. Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2). Standards in Genomic Sciences. 4: 393-401. PMID 21886866 DOI: 10.4056/Sigs.2064705 |
0.384 |
|
| 2011 |
Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, et al. Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A). Standards in Genomic Sciences. 4: 381-92. PMID 21886865 DOI: 10.4056/Sigs.2014648 |
0.38 |
|
| 2011 |
Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, et al. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Standards in Genomic Sciences. 4: 371-80. PMID 21886864 DOI: 10.4056/Sigs.2004684 |
0.33 |
|
| 2011 |
Han C, Gronow S, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Zeytun A, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Treponema succinifaciens type strain (6091). Standards in Genomic Sciences. 4: 361-70. PMID 21886863 DOI: 10.4056/Sigs.1984594 |
0.318 |
|
| 2011 |
Daligault H, Lapidus A, Zeytun A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of Haliscomenobacter hydrossis type strain (O). Standards in Genomic Sciences. 4: 352-60. PMID 21886862 DOI: 10.4056/Sigs.1964579 |
0.351 |
|
| 2011 |
Munk AC, Lapidus A, Lucas S, Nolan M, Tice H, Cheng JF, Del Rio TG, Goodwin L, Pitluck S, Liolios K, Huntemann M, Ivanova N, Mavromatis K, Mikhailova N, Pati A, et al. Complete genome sequence of Tsukamurella paurometabola type strain (no. 33). Standards in Genomic Sciences. 4: 342-51. PMID 21886861 DOI: 10.4056/Sigs.1894556 |
0.374 |
|
| 2011 |
Sikorski J, Teshima H, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Ovchinikova G, Pati A, et al. Complete genome sequence of Mahella australiensis type strain (50-1 BON). Standards in Genomic Sciences. 4: 331-41. PMID 21886860 DOI: 10.4056/Sigs.1864526 |
0.361 |
|
| 2011 |
Anderson I, Sikorski J, Zeytun A, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1). Standards in Genomic Sciences. 4: 322-30. PMID 21886859 DOI: 10.4056/Sigs.1844518 |
0.361 |
|
| 2011 |
Ivanova N, Sikorski J, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, et al. Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL). Standards in Genomic Sciences. 4: 312-21. PMID 21886858 DOI: 10.4056/Sigs.1824509 |
0.333 |
|
| 2011 |
Huntemann M, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)). Standards in Genomic Sciences. 4: 303-11. PMID 21886857 DOI: 10.4056/Sigs.1814460 |
0.362 |
|
| 2011 |
Svenning MM, Hestnes AG, Wartiainen I, Stein LY, Klotz MG, Kalyuzhnaya MG, Spang A, Bringel F, Vuilleumier S, Lajus A, Médigue C, Bruce DC, Cheng JF, Goodwin L, Ivanova N, et al. Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96. Journal of Bacteriology. 193: 6418-9. PMID 21725021 DOI: 10.1128/Jb.05380-11 |
0.301 |
|
| 2011 |
Land M, Held B, Gronow S, Abt B, Lucas S, Del Rio TG, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, et al. Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139). Standards in Genomic Sciences. 4: 233-43. PMID 21677860 DOI: 10.4056/Sigs.1784330 |
0.342 |
|
| 2011 |
Pati A, Abt B, Teshima H, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Cellulophaga lytica type strain (LIM-21). Standards in Genomic Sciences. 4: 221-32. PMID 21677859 DOI: 10.4056/Sigs.1774329 |
0.381 |
|
| 2011 |
Pati A, Zhang X, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of Oceanithermus profundus type strain (506). Standards in Genomic Sciences. 4: 210-20. PMID 21677858 DOI: 10.4056/Sigs.1734292 |
0.379 |
|
| 2011 |
Göker M, Gronow S, Zeytun A, Nolan M, Lucas S, Lapidus A, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Ovchinikova G, et al. Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). Standards in Genomic Sciences. 4: 200-9. PMID 21677857 DOI: 10.4056/Sigs.1714269 |
0.394 |
|
| 2011 |
Gronow S, Held B, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, et al. Complete genome sequence of Bacteroides salanitronis type strain (BL78). Standards in Genomic Sciences. 4: 191-9. PMID 21677856 DOI: 10.4056/Sigs.1704212 |
0.357 |
|
| 2011 |
Wirth R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ioanna P, et al. Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). Standards in Genomic Sciences. 4: 173-82. PMID 21677854 DOI: 10.4056/Sigs.1644004 |
0.376 |
|
| 2011 |
Pagani I, Chertkov O, Lapidus A, Lucas S, Del Rio TG, Tice H, Copeland A, Cheng JF, Nolan M, Saunders E, Pitluck S, Held B, Goodwin L, Liolios K, Ovchinikova G, et al. Complete genome sequence of Marivirga tractuosa type strain (H-43). Standards in Genomic Sciences. 4: 154-62. PMID 21677852 DOI: 10.4056/Sigs.1623941 |
0.379 |
|
| 2011 |
Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). Standards in Genomic Sciences. 4: 144-53. PMID 21677851 DOI: 10.4056/sigs.1553862 |
0.359 |
|
| 2011 |
Zeytun A, Sikorski J, Nolan M, Lapidus A, Lucas S, Han J, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6). Standards in Genomic Sciences. 4: 131-43. PMID 21677850 DOI: 10.4056/Sigs.1463589 |
0.33 |
|
| 2011 |
Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics. 43: 476-81. PMID 21478890 DOI: 10.1038/Ng.807 |
0.401 |
|
| 2011 |
Pagani I, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Chertkov O, Davenport K, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, et al. Complete genome sequence of Desulfobulbus propionicus type strain (1pr3). Standards in Genomic Sciences. 4: 100-10. PMID 21475592 DOI: 10.4056/Sigs.1613929 |
0.371 |
|
| 2011 |
Ivanova N, Rohde C, Munk C, Nolan M, Lucas S, Del Rio TG, Tice H, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, et al. Complete genome sequence of Truepera radiovictrix type strain (RQ-24). Standards in Genomic Sciences. 4: 91-9. PMID 21475591 DOI: 10.4056/Sigs.1563919 |
0.367 |
|
| 2011 |
Lang E, Teshima H, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, et al. Complete genome sequence of Weeksella virosa type strain (9751). Standards in Genomic Sciences. 4: 81-90. PMID 21475590 DOI: 10.4056/Sigs.1603927 |
0.323 |
|
| 2011 |
Abt B, Lu M, Misra M, Han C, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of Cellulophaga algicola type strain (IC166). Standards in Genomic Sciences. 4: 72-80. PMID 21475589 DOI: 10.4056/Sigs.1543845 |
0.37 |
|
| 2011 |
Göker M, Cleland D, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Isosphaera pallida type strain (IS1B). Standards in Genomic Sciences. 4: 63-71. PMID 21475588 DOI: 10.4056/Sigs.1533840 |
0.406 |
|
| 2011 |
Pitluck S, Sikorski J, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1). Standards in Genomic Sciences. 4: 54-62. PMID 21475587 DOI: 10.4056/Sigs.1523807 |
0.38 |
|
| 2011 |
Pati A, Gronow S, Zeytun A, Lapidus A, Nolan M, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of Bacteroides helcogenes type strain (P 36-108). Standards in Genomic Sciences. 4: 45-53. PMID 21475586 DOI: 10.4056/Sigs.1513795 |
0.327 |
|
| 2011 |
Gronow S, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. Complete genome sequence of Paludibacter propionicigenes type strain (WB4). Standards in Genomic Sciences. 4: 36-44. PMID 21475585 DOI: 10.4056/Sigs.1503846 |
0.391 |
|
| 2011 |
Chertkov O, Sikorski J, Nolan M, Lapidus A, Lucas S, Del Rio TG, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, et al. Complete genome sequence of Thermomonospora curvata type strain (B9). Standards in Genomic Sciences. 4: 13-22. PMID 21475583 DOI: 10.4056/Sigs.1453580 |
0.369 |
|
| 2011 |
Abt B, Teshima H, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, Tapia R, et al. Complete genome sequence of Leadbetterella byssophila type strain (4M15). Standards in Genomic Sciences. 4: 2-12. PMID 21475582 DOI: 10.4056/Sigs.1413518 |
0.366 |
|
| 2011 |
Feinberg L, Foden J, Barrett T, Davenport KW, Bruce D, Detter C, Tapia R, Han C, Lapidus A, Lucas S, Cheng JF, Pitluck S, Woyke T, Ivanova N, Mikhailova N, et al. Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313. Journal of Bacteriology. 193: 2906-7. PMID 21460082 DOI: 10.1128/JB.00322-11 |
0.303 |
|
| 2011 |
Stein LY, Bringel F, DiSpirito AA, Han S, Jetten MS, Kalyuzhnaya MG, Kits KD, Klotz MG, Op den Camp HJ, Semrau JD, Vuilleumier S, Bruce DC, Cheng JF, Davenport KW, Goodwin L, et al. Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242). Journal of Bacteriology. 193: 2668-9. PMID 21441518 DOI: 10.1128/Jb.00278-11 |
0.345 |
|
| 2011 |
Blumer-Schuette SE, Ozdemir I, Mistry D, Lucas S, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Land ML, Hauser LJ, Woyke T, Mikhailova N, Pati A, Kyrpides NC, Ivanova N, et al. Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus. Journal of Bacteriology. 193: 1483-4. PMID 21216991 DOI: 10.1128/JB.01515-10 |
0.347 |
|
| 2010 |
Brambilla E, Djao OD, Daligault H, Lapidus A, Lucas S, Hammon N, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, et al. Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). Standards in Genomic Sciences. 3: 203-11. PMID 21304750 DOI: 10.4056/Sigs.1183143 |
0.34 |
|
| 2010 |
Sikorski J, Munk C, Lapidus A, Ngatchou Djao OD, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Han C, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, et al. Complete genome sequence of Sulfurimonas autotrophica type strain (OK10). Standards in Genomic Sciences. 3: 194-202. PMID 21304749 DOI: 10.4056/Sigs.1173118 |
0.359 |
|
| 2010 |
Nolan M, Sikorski J, Davenport K, Lucas S, Del Rio TG, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, et al. Complete genome sequence of Ferrimonas balearica type strain (PAT). Standards in Genomic Sciences. 3: 174-82. PMID 21304747 DOI: 10.4056/Sigs.1161239 |
0.355 |
|
| 2010 |
Kiss H, Cleland D, Lapidus A, Lucas S, Del Rio TG, Nolan M, Tice H, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, ... ... Cheng JF, et al. Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1). Standards in Genomic Sciences. 3: 153-62. PMID 21304745 DOI: 10.4056/Sigs.1153107 |
0.334 |
|
| 2010 |
Mavromatis K, Yasawong M, Chertkov O, Lapidus A, Lucas S, Nolan M, Del Rio TG, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Tapia R, Han C, Bruce D, et al. Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228). Standards in Genomic Sciences. 3: 136-44. PMID 21304743 DOI: 10.4056/Sigs.1143106 |
0.357 |
|
| 2010 |
Yasawong M, Teshima H, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, et al. Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). Standards in Genomic Sciences. 3: 126-35. PMID 21304742 DOI: 10.4056/Sigs.1123072 |
0.303 |
|
| 2010 |
Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S, Nolan M, Glavina Del Rio T, Cheng JF, Bruce D, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mikhailova N, et al. Complete genome sequence of Vulcanisaeta distributa type strain (IC-017). Standards in Genomic Sciences. 3: 117-25. PMID 21304741 DOI: 10.4056/Sigs.1113067 |
0.374 |
|
| 2010 |
Pitluck S, Yasawong M, Munk C, Nolan M, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter C, Tapia R, Han C, Goodwin L, Liolios K, et al. Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P). Standards in Genomic Sciences. 3: 108-16. PMID 21304740 DOI: 10.4056/Sigs.1133078 |
0.366 |
|
| 2010 |
Han C, Gu W, Zhang X, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Pagani I, Ivanova N, et al. Complete genome sequence of Thermaerobacter marianensis type strain (7p75a). Standards in Genomic Sciences. 3: 337-45. PMID 21304738 DOI: 10.4056/Sigs.1373474 |
0.342 |
|
| 2010 |
Sun H, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509). Standards in Genomic Sciences. 3: 325-36. PMID 21304737 DOI: 10.4056/Sigs.1363462 |
0.379 |
|
| 2010 |
Anderson I, Djao OD, Misra M, Chertkov O, Nolan M, Lucas S, Lapidus A, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, et al. Complete genome sequence of Methanothermus fervidus type strain (V24S). Standards in Genomic Sciences. 3: 315-24. PMID 21304736 DOI: 10.4056/Sigs.1283367 |
0.337 |
|
| 2010 |
Sikorski J, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). Standards in Genomic Sciences. 3: 304-14. PMID 21304735 DOI: 10.4056/Sigs.1273360 |
0.393 |
|
| 2010 |
Del Rio TG, Chertkov O, Yasawong M, Lucas S, Deshpande S, Cheng JF, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Pati A, et al. Complete genome sequence of Intrasporangium calvum type strain (7 KIP). Standards in Genomic Sciences. 3: 294-303. PMID 21304734 DOI: 10.4056/Sigs.1263355 |
0.356 |
|
| 2010 |
Pitluck S, Yasawong M, Held B, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Chertkov O, Goodwin L, Tapia R, Han C, Liolios K, et al. Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3). Standards in Genomic Sciences. 3: 285-93. PMID 21304733 DOI: 10.4056/Sigs.1253298 |
0.398 |
|
| 2010 |
Sun H, Spring S, Lapidus A, Davenport K, Del Rio TG, Tice H, Nolan M, Copeland A, Cheng JF, Lucas S, Tapia R, Goodwin L, Pitluck S, Ivanova N, Pagani I, et al. Complete genome sequence of Desulfarculus baarsii type strain (2st14). Standards in Genomic Sciences. 3: 276-84. PMID 21304732 DOI: 10.4056/Sigs.1243258 |
0.31 |
|
| 2010 |
Djao OD, Zhang X, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1). Standards in Genomic Sciences. 3: 268-75. PMID 21304731 DOI: 10.4056/Sigs.1233249 |
0.35 |
|
| 2010 |
von Jan M, Lapidus A, Del Rio TG, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Goodwin L, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. Complete genome sequence of Archaeoglobus profundus type strain (AV18). Standards in Genomic Sciences. 2: 327-46. PMID 21304717 DOI: 10.4056/Sigs.942153 |
0.375 |
|
| 2010 |
Liolios K, Sikorski J, Jando M, Lapidus A, Copeland A, Glavina T, Del Rio, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Woyke T, Goodwin L, Pitluck S, et al. Complete genome sequence of Thermobispora bispora type strain (R51). Standards in Genomic Sciences. 2: 318-26. PMID 21304716 DOI: 10.4056/Sigs.962171 |
0.414 |
|
| 2010 |
Pati A, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Chertkov O, Bruce D, Tapia R, Goodwin L, Pitluck S, et al. Complete genome sequence of Arcobacter nitrofigilis type strain (CI). Standards in Genomic Sciences. 2: 300-8. PMID 21304714 DOI: 10.4056/Sigs.912121 |
0.329 |
|
| 2010 |
Mavromatis K, Abt B, Brambilla E, Lapidus A, Copeland A, Deshpande S, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Woyke T, Goodwin L, Pitluck S, et al. Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24). Standards in Genomic Sciences. 2: 290-9. PMID 21304713 DOI: 10.4056/Sigs.952166 |
0.394 |
|
| 2010 |
Chertkov O, Sikorski J, Brambilla E, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Tapia R, Goodwin L, et al. Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Standards in Genomic Sciences. 2: 280-9. PMID 21304712 DOI: 10.4056/Sigs.902116 |
0.392 |
|
| 2010 |
Kiss H, Lang E, Lapidus A, Copeland A, Nolan M, Glavina Del Rio T, Chen F, Lucas S, Tice H, Cheng JF, Han C, Goodwin L, Pitluck S, Liolios K, Pati A, et al. Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460). Standards in Genomic Sciences. 2: 270-9. PMID 21304711 DOI: 10.4056/Sigs.892105 |
0.346 |
|
| 2010 |
Pati A, Sikorski J, Gronow S, Munk C, Lapidus A, Copeland A, Glavina Del Tio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, et al. Complete genome sequence of Brachyspira murdochii type strain (56-150). Standards in Genomic Sciences. 2: 260-9. PMID 21304710 DOI: 10.4056/Sigs.831993 |
0.369 |
|
| 2010 |
Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Thermosphaera aggregans type strain (M11TL). Standards in Genomic Sciences. 2: 245-59. PMID 21304709 DOI: 10.4056/Sigs.821804 |
0.328 |
|
| 2010 |
Harmon-Smith M, Celia L, Chertkov O, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300). Standards in Genomic Sciences. 2: 220-7. PMID 21304705 DOI: 10.4056/Sigs.811799 |
0.343 |
|
| 2010 |
Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Ivanova N, Ovchinnikova G, et al. Complete genome sequence of Conexibacter woesei type strain (ID131577). Standards in Genomic Sciences. 2: 212-9. PMID 21304704 DOI: 10.4056/Sigs.751339 |
0.343 |
|
| 2010 |
Sikorski J, Lapidus A, Copeland A, Misra M, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Jando M, Schneider S, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). Standards in Genomic Sciences. 2: 203-11. PMID 21304703 DOI: 10.4056/Sigs.791633 |
0.377 |
|
| 2010 |
Wirth R, Sikorski J, Brambilla E, Misra M, Lapidus A, Copeland A, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Tapia R, Bruce D, et al. Complete genome sequence of Thermocrinis albus type strain (HI 11/12). Standards in Genomic Sciences. 2: 194-202. PMID 21304702 DOI: 10.4056/Sigs.761490 |
0.346 |
|
| 2010 |
Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Labutti K, Pati A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, et al. Complete genome sequence of Kribbella flavida type strain (IFO 14399). Standards in Genomic Sciences. 2: 186-93. PMID 21304701 DOI: 10.4056/Sigs.731321 |
0.356 |
|
| 2010 |
Lail K, Sikorski J, Saunders E, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Spirosoma linguale type strain (1). Standards in Genomic Sciences. 2: 176-85. PMID 21304700 DOI: 10.4056/Sigs.741334 |
0.378 |
|
| 2010 |
Tice H, Mayilraj S, Sims D, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Copeland A, Cheng JF, Meincke L, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Nakamurella multipartita type strain (Y-104). Standards in Genomic Sciences. 2: 168-75. PMID 21304699 DOI: 10.4056/Sigs.721316 |
0.36 |
|
| 2010 |
Ivanova N, Sikorski J, Jando M, Munk C, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Geodermatophilus obscurus type strain (G-20). Standards in Genomic Sciences. 2: 158-67. PMID 21304698 DOI: 10.4056/Sigs.711311 |
0.366 |
|
| 2010 |
Sikorski J, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, et al. Complete genome sequence of Sulfurospirillum deleyianum type strain (5175). Standards in Genomic Sciences. 2: 149-57. PMID 21304697 DOI: 10.4056/Sigs.671209 |
0.37 |
|
| 2010 |
Labutti K, Mayilraj S, Clum A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Goodwin L, et al. Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). Standards in Genomic Sciences. 3: 85-92. PMID 21304695 DOI: 10.4056/Sigs.1092865 |
0.35 |
|
| 2010 |
Göker M, Held B, Lucas S, Nolan M, Yasawong M, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter JC, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, et al. Complete genome sequence of Olsenella uli type strain (VPI D76D-27C). Standards in Genomic Sciences. 3: 76-84. PMID 21304694 DOI: 10.4056/Sigs.1082860 |
0.361 |
|
| 2010 |
Göker M, Held B, Lapidus A, Nolan M, Spring S, Yasawong M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Goodwin L, Tapia R, Pitluck S, Liolios K, Ivanova N, et al. Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1). Standards in Genomic Sciences. 3: 66-75. PMID 21304693 DOI: 10.4056/Sigs.1072907 |
0.343 |
|
| 2010 |
Sikorski J, Lapidus A, Chertkov O, Lucas S, Copeland A, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Han C, Brambilla E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288). Standards in Genomic Sciences. 3: 57-65. PMID 21304692 DOI: 10.4056/Sigs.1062906 |
0.401 |
|
| 2010 |
Labutti K, Sikorski J, Schneider S, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, et al. Complete genome sequence of Planctomyces limnophilus type strain (Mü 290). Standards in Genomic Sciences. 3: 47-56. PMID 21304691 DOI: 10.4056/Sigs.1052813 |
0.332 |
|
| 2010 |
Sikorski J, Tindall BJ, Lowry S, Lucas S, Nolan M, Copeland A, Glavina Del Rio T, Tice H, Cheng JF, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of Meiothermus silvanus type strain (VI-R2). Standards in Genomic Sciences. 3: 37-46. PMID 21304690 DOI: 10.4056/Sigs.1042812 |
0.408 |
|
| 2010 |
Tindall BJ, Sikorski J, Lucas S, Goltsman E, Copeland A, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, et al. Complete genome sequence of Meiothermus ruber type strain (21). Standards in Genomic Sciences. 3: 26-36. PMID 21304689 DOI: 10.4056/Sigs.1032748 |
0.394 |
|
| 2010 |
Abt B, Foster B, Lapidus A, Clum A, Sun H, Pukall R, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. Complete genome sequence of Cellulomonas flavigena type strain (134). Standards in Genomic Sciences. 3: 15-25. PMID 21304688 DOI: 10.4056/Sigs.1012662 |
0.385 |
|
| 2010 |
Chang YJ, Pukall R, Saunders E, Lapidus A, Copeland A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, et al. Complete genome sequence of Acidaminococcus fermentans type strain (VR4). Standards in Genomic Sciences. 3: 1-14. PMID 21304687 DOI: 10.4056/Sigs.1002553 |
0.366 |
|
| 2010 |
Saunders E, Tindall BJ, Fähnrich R, Lapidus A, Copeland A, Del Rio TG, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Chain P, et al. Complete genome sequence of Haloterrigena turkmenica type strain (4k). Standards in Genomic Sciences. 2: 107-16. PMID 21304683 DOI: 10.4056/Sigs.681272 |
0.381 |
|
| 2010 |
Ivanova N, Daum C, Lang E, Abt B, Kopitz M, Saunders E, Lapidus A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, et al. Complete genome sequence of Haliangium ochraceum type strain (SMP-2). Standards in Genomic Sciences. 2: 96-106. PMID 21304682 DOI: 10.4056/Sigs.69.1277 |
0.366 |
|
| 2010 |
Glavina Del Rio T, Abt B, Spring S, Lapidus A, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Standards in Genomic Sciences. 2: 87-95. PMID 21304681 DOI: 10.4056/Sigs.661199 |
0.368 |
|
| 2010 |
Gronow S, Welnitz S, Lapidus A, Nolan M, Ivanova N, Glavina Del Rio T, Copeland A, Chen F, Tice H, Pitluck S, Cheng JF, Saunders E, Brettin T, Han C, Detter JC, et al. Complete genome sequence of Veillonella parvula type strain (Te3). Standards in Genomic Sciences. 2: 57-65. PMID 21304678 DOI: 10.4056/Sigs.521107 |
0.356 |
|
| 2010 |
Pati A, Labutti K, Pukall R, Nolan M, Glavina Del Rio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, Bruce D, et al. Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022). Standards in Genomic Sciences. 2: 49-56. PMID 21304677 DOI: 10.4056/Sigs.601105 |
0.348 |
|
| 2010 |
Spring S, Nolan M, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Land M, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)). Standards in Genomic Sciences. 2: 38-48. PMID 21304676 DOI: 10.4056/Sigs.581048 |
0.366 |
|
| 2010 |
Nolan M, Sikorski J, Jando M, Lucas S, Lapidus A, Glavina Del Rio T, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Sims D, Meincke L, Brettin T, Han C, et al. Complete genome sequence of Streptosporangium roseum type strain (NI 9100). Standards in Genomic Sciences. 2: 29-37. PMID 21304675 DOI: 10.4056/Sigs.631049 |
0.372 |
|
| 2010 |
Ivanova N, Sikorski J, Jando M, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Mavromatis K, et al. Complete genome sequence of Gordonia bronchialis type strain (3410). Standards in Genomic Sciences. 2: 19-28. PMID 21304674 DOI: 10.4056/Sigs.611106 |
0.388 |
|
| 2010 |
Mavromatis K, Sikorski J, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Ovchinnikova G, et al. Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA). Standards in Genomic Sciences. 2: 9-18. PMID 21304673 DOI: 10.4056/Sigs.591104 |
0.372 |
|
| 2010 |
Foster B, Pukall R, Abt B, Nolan M, Glavina Del Rio T, Chen F, Lucas S, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Bruce D, et al. Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07). Standards in Genomic Sciences. 2: 1-8. PMID 21304672 DOI: 10.4056/Sigs.571102 |
0.388 |
|
| 2010 |
Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Chen F, Nolan M, Saunders E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments. Archaea (Vancouver, B.C.). 2010: 690737. PMID 21234345 DOI: 10.1155/2010/690737 |
0.313 |
|
| 2009 |
Clum A, Tindall BJ, Sikorski J, Ivanova N, Mavrommatis K, Lucas S, Glavina T, Del Rio, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, et al. Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). Standards in Genomic Sciences. 1: 308-16. PMID 21304671 DOI: 10.4056/Sigs.51657 |
0.39 |
|
| 2009 |
Nolan M, Gronow S, Lapidus A, Ivanova N, Copeland A, Lucas S, Del Rio TG, Chen F, Tice H, Pitluck S, Cheng JF, Sims D, Meincke L, Bruce D, Goodwin L, et al. Complete genome sequence of Streptobacillus moniliformis type strain (9901). Standards in Genomic Sciences. 1: 300-7. PMID 21304670 DOI: 10.4056/Sigs.48727 |
0.37 |
|
| 2009 |
Nolan M, Tindall BJ, Pomrenke H, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Han C, Bruce D, Goodwin L, Chain P, et al. Complete genome sequence of Rhodothermus marinus type strain (R-10). Standards in Genomic Sciences. 1: 283-90. PMID 21304669 DOI: 10.4056/Sigs.46736 |
0.348 |
|
| 2009 |
Tindall BJ, Schneider S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Mikhailova N, et al. Complete genome sequence of Halomicrobium mukohataei type strain (arg-2). Standards in Genomic Sciences. 1: 270-7. PMID 21304667 DOI: 10.4056/Sigs.42644 |
0.384 |
|
| 2009 |
Pukall R, Gehrich-Schröter G, Lapidus A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Copeland A, Saunders E, Brettin T, Detter JC, Bruce D, et al. Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). Standards in Genomic Sciences. 1: 262-9. PMID 21304666 DOI: 10.4056/Sigs.41646 |
0.37 |
|
| 2009 |
Chovatia M, Sikorski J, Schröder M, Lapidus A, Nolan M, Tice H, Glavina Del Rio T, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, et al. Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Standards in Genomic Sciences. 1: 254-61. PMID 21304665 DOI: 10.4056/Sigs.40645 |
0.354 |
|
| 2009 |
Spring S, Lapidus A, Schröder M, Gleim D, Sims D, Meincke L, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, et al. Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). Standards in Genomic Sciences. 1: 242-53. PMID 21304664 DOI: 10.4056/Sigs.39508 |
0.342 |
|
| 2009 |
Pukall R, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Kuske C, Brettin T, Detter JC, et al. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Standards in Genomic Sciences. 1: 234-41. PMID 21304663 DOI: 10.4056/Sigs.37633 |
0.372 |
|
| 2009 |
Munk C, Lapidus A, Copeland A, Jando M, Mayilraj S, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, et al. Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Standards in Genomic Sciences. 1: 234-41. PMID 21304662 DOI: 10.4056/Sigs.47643 |
0.346 |
|
| 2009 |
Han C, Sikorski J, Lapidus A, Nolan M, Glavina Del Rio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Bruce D, et al. Complete genome sequence of Kangiella koreensis type strain (SW-125). Standards in Genomic Sciences. 1: 226-33. PMID 21304661 DOI: 10.4056/Sigs.36635 |
0.361 |
|
| 2009 |
Anderson I, Tindall BJ, Pomrenke H, Göker M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Chen F, Tice H, Cheng JF, Lucas S, Chertkov O, Bruce D, Brettin T, et al. Complete genome sequence of Halorhabdus utahensis type strain (AX-2). Standards in Genomic Sciences. 1: 218-25. PMID 21304660 DOI: 10.4056/Sigs.31864 |
0.373 |
|
| 2009 |
Saunders E, Pukall R, Abt B, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, et al. Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). Standards in Genomic Sciences. 1: 174-82. PMID 21304654 DOI: 10.4056/Sigs.33592 |
0.344 |
|
| 2009 |
Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio TG, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, Detter JC, et al. Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Standards in Genomic Sciences. 1: 166-73. PMID 21304653 DOI: 10.4056/Sigs.29547 |
0.368 |
|
| 2009 |
Labutti K, Pukall R, Steenblock K, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Anaerococcus prevotii type strain (PC1). Standards in Genomic Sciences. 1: 159-65. PMID 21304652 DOI: 10.4056/Sigs.24194 |
0.375 |
|
| 2009 |
Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, et al. Complete genome sequence of Halogeometricum borinquense type strain (PR3). Standards in Genomic Sciences. 1: 150-9. PMID 21304651 DOI: 10.4056/Sigs.23264 |
0.36 |
|
| 2009 |
Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, et al. Complete genome sequence of Saccharomonospora viridis type strain (P101). Standards in Genomic Sciences. 1: 141-9. PMID 21304650 DOI: 10.4056/Sigs.20263 |
0.342 |
|
| 2009 |
Lang E, Lapidus A, Chertkov O, Brettin T, Detter JC, Han C, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Land M, Hauser L, et al. Complete genome sequence of Dyadobacter fermentans type strain (NS114). Standards in Genomic Sciences. 1: 133-40. PMID 21304649 DOI: 10.4056/Sigs.19262 |
0.375 |
|
| 2009 |
Ivanova N, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Brettin T, Detter JC, et al. Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b). Standards in Genomic Sciences. 1: 126-32. PMID 21304648 DOI: 10.4056/Sigs.1854 |
0.4 |
|
| 2009 |
Copeland A, Lapidus A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Mikhailova N, Pati A, Ivanova N, Mavromatis K, et al. Complete genome sequence of Catenulispora acidiphila type strain (ID 139908). Standards in Genomic Sciences. 1: 119-25. PMID 21304647 DOI: 10.4056/Sigs.17259 |
0.398 |
|
| 2009 |
Ivanova N, Sikorski J, Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, et al. Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Standards in Genomic Sciences. 1: 110-8. PMID 21304646 DOI: 10.4056/Sigs.16197 |
0.369 |
|
| 2009 |
Mavrommatis K, Gronow S, Saunders E, Land M, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). Standards in Genomic Sciences. 1: 101-9. PMID 21304645 DOI: 10.4056/Sigs.15195 |
0.351 |
|
| 2009 |
Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, ... Cheng JF, et al. Complete genome sequence of Cryptobacterium curtum type strain (12-3). Standards in Genomic Sciences. 1: 93-100. PMID 21304644 DOI: 10.4056/Sigs.12260 |
0.397 |
|
| 2009 |
Han C, Spring S, Lapidus A, Del Rio TG, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Standards in Genomic Sciences. 1: 54-62. PMID 21304637 DOI: 10.4056/Sigs.22138 |
0.348 |
|
| 2009 |
Land M, Lapidus A, Mayilraj S, Chen F, Copeland A, Del Rio TG, Nolan M, Lucas S, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Pitluck S, Rohde M, et al. Complete genome sequence of Actinosynnema mirum type strain (101). Standards in Genomic Sciences. 1: 46-53. PMID 21304636 DOI: 10.4056/Sigs.21137 |
0.395 |
|
| 2009 |
Clum A, Nolan M, Lang E, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, Mikhailova N, et al. Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP). Standards in Genomic Sciences. 1: 38-45. PMID 21304635 DOI: 10.4056/Sigs.1463 |
0.372 |
|
| 2009 |
Copeland A, Spring S, Göker M, Schneider S, Lapidus A, Del Rio TG, Tice H, Cheng JF, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, et al. Complete genome sequence of Desulfomicrobium baculatum type strain (X). Standards in Genomic Sciences. 1: 29-37. PMID 21304634 DOI: 10.4056/Sigs.13134 |
0.357 |
|
| 2009 |
Land M, Pukall R, Abt B, Göker M, Rohde M, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Standards in Genomic Sciences. 1: 21-8. PMID 21304633 DOI: 10.4056/Sigs.1162 |
0.357 |
|
| 2009 |
Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Kytococcus sedentarius type strain (541). Standards in Genomic Sciences. 1: 12-20. PMID 21304632 DOI: 10.4056/Sigs.761 |
0.365 |
|
| 2009 |
Lapidus A, Pukall R, Labuttii K, Copeland A, Del Rio TG, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Rohde M, Göker M, et al. Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Standards in Genomic Sciences. 1: 3-11. PMID 21304631 DOI: 10.4056/Sigs.492 |
0.374 |
|
| 2009 |
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, ... ... Cheng JF, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature. 462: 1056-60. PMID 20033048 DOI: 10.1038/Nature08656 |
0.344 |
|
| 2009 |
Woyke T, Xie G, Copeland A, González JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R. Assembling the marine metagenome, one cell at a time. Plos One. 4: e5299. PMID 19390573 DOI: 10.1371/Journal.Pone.0005299 |
0.318 |
|
| 2009 |
Zhang Z, Alpert D, Francis R, Chatterjee B, Yu Q, Tansey T, Sabol SL, Cui C, Bai Y, Koriabine M, Yoshinaga Y, Cheng JF, Chen F, Martin J, Schackwitz W, et al. Massively parallel sequencing identifies the gene Megf8 with ENU-induced mutation causing heterotaxy. Proceedings of the National Academy of Sciences of the United States of America. 106: 3219-24. PMID 19218456 DOI: 10.1073/Pnas.0813400106 |
0.33 |
|
| 2007 |
Cheng JF, Priest JR, Pennacchio LA. Comparative genomics: a tool to functionally annotate human DNA. Methods in Molecular Biology (Clifton, N.J.). 366: 229-51. PMID 17568128 DOI: 10.1007/978-1-59745-030-0_13 |
0.457 |
|
| 2007 |
Ward RD, Davis SW, Cho M, Esposito C, Lyons RH, Cheng JF, Rubin EM, Rhodes SJ, Raetzman LT, Smith TP, Camper SA. Comparative genomics reveals functional transcriptional control sequences in the Prop1 gene. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 18: 521-37. PMID 17557180 DOI: 10.1007/S00335-007-9008-6 |
0.383 |
|
| 2007 |
Wang QF, Prabhakar S, Chanan S, Cheng JF, Rubin EM, Boffelli D. Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons. Genome Biology. 8: R1. PMID 17201929 DOI: 10.1186/gb-2007-8-1-r1 |
0.345 |
|
| 2006 |
Weidman JR, Dolinoy DC, Maloney KA, Cheng JF, Jirtle RL. Imprinting of opossum Igf2r in the absence of differential methylation and air. Epigenetics. 1: 49-54. PMID 17998818 DOI: 10.4161/Epi.1.1.2592 |
0.311 |
|
| 2006 |
De Leo AA, Lefevre C, Topcic D, Pharo E, Cheng JF, Frappell P, Westerman M, Graves JA, Nicholas KR. Characterization of two whey protein genes in the Australian dasyurid marsupial, the stripe-faced dunnart (Sminthopsis macroura). Cytogenetic and Genome Research. 115: 62-9. PMID 16974085 DOI: 10.1159/000094802 |
0.396 |
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| 2006 |
Wang QF, Prabhakar S, Wang Q, Moses AM, Chanan S, Brown M, Eisen MB, Cheng JF, Rubin EM, Boffelli D. Primate-specific evolution of an LDLR enhancer. Genome Biology. 7: R68. PMID 16884525 DOI: 10.1186/Gb-2006-7-8-R68 |
0.355 |
|
| 2006 |
Nosenko T, Lidie KL, Van Dolah FM, Lindquist E, Cheng JF, Bhattacharya D. Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis. Molecular Biology and Evolution. 23: 2026-38. PMID 16877498 DOI: 10.1093/Molbev/Msl074 |
0.302 |
|
| 2006 |
Volik S, Raphael BJ, Huang G, Stratton MR, Bignel G, Murnane J, Brebner JH, Bajsarowicz K, Paris PL, Tao Q, Kowbel D, Lapuk A, Shagin DA, Shagina IA, Gray JW, ... Cheng JF, et al. Decoding the fine-scale structure of a breast cancer genome and transcriptome. Genome Research. 16: 394-404. PMID 16461635 DOI: 10.1101/Gr.4247306 |
0.301 |
|
| 2006 |
Cooper SJB, Wheeler D, De Leo A, Cheng JF, Holland RAB, Marshall Graves JA, Hope RM. The mammalian αD-globin gene lineage and a new model for the molecular evolution of α-globin gene clusters at the stem of the mammalian radiation Molecular Phylogenetics and Evolution. 38: 439-448. PMID 16024261 DOI: 10.1016/j.ympev.2005.05.014 |
0.486 |
|
| 2004 |
Kerns JA, Newton J, Berryere TG, Rubin EM, Cheng JF, Schmutz SM, Barsh GS. Characterization of the dog Agouti gene and a nonagoutimutation in German Shepherd Dogs. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 15: 798-808. PMID 15520882 DOI: 10.1007/S00335-004-2377-1 |
0.348 |
|
| 2004 |
Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, Lowry S, Gordon LA, Scott D, Xie G, Huang W, Hellsten U, Tran-Gyamfi M, She X, Prabhakar S, Aerts A, ... ... Cheng JF, et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431: 268-74. PMID 15372022 DOI: 10.1038/Nature02919 |
0.473 |
|
| 2004 |
Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D, Zhang G. A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins. Bmc Genomics. 5: 56. PMID 15310403 DOI: 10.1186/1471-2164-5-56 |
0.38 |
|
| 2004 |
Boffelli D, Cheng JF, Rubin EM. Convergent evolution in primates and an insectivore. Genomics. 83: 19-23. PMID 14667805 DOI: 10.1016/S0888-7543(03)00148-4 |
0.362 |
|
| 2004 |
Cheng JF, Pennacchio LA. Comparative and functional analysis of cardiovascular-related genes. Pharmacogenomics. 4: 571-82. PMID 12943465 DOI: 10.1517/PHGS.4.5.571.23794 |
0.495 |
|
| 2002 |
Boultwood J, Fidler C, Strickson AJ, Watkins F, Gama S, Kearney L, Tosi S, Kasprzyk A, Cheng JF, Jaju RJ, Wainscoat JS. Narrowing and genomic annotation of the commonly deleted region of the 5q- syndrome. Blood. 99: 4638-41. PMID 12036901 DOI: 10.1182/BLOOD.V99.12.4638 |
0.383 |
|
| 2001 |
Frazer KA, Sheehan JB, Stokowski RP, Chen X, Hosseini R, Cheng JF, Fodor SP, Cox DR, Patil N. Evolutionarily conserved sequences on human chromosome 21. Genome Research. 11: 1651-9. PMID 11591642 DOI: 10.1101/Gr.198201 |
0.374 |
|
| 2001 |
Qiu Y, Cavelier L, Chiu S, Yang X, Rubin E, Cheng JF. Human and mouse ABCA1 comparative sequencing and transgenesis studies revealing novel regulatory sequences. Genomics. 73: 66-76. PMID 11352567 DOI: 10.1006/Geno.2000.6467 |
0.443 |
|
| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Cheng JF, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062 |
0.346 |
|
| 2001 |
Wu Q, Zhang T, Cheng JF, Kim Y, Grimwood J, Schmutz J, Dickson M, Noonan JP, Zhang MQ, Myers RM, Maniatis T. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome Research. 11: 389-404. PMID 11230163 DOI: 10.1101/Gr.167301 |
0.681 |
|
| 2000 |
Santamarina-Fojo S, Peterson K, Knapper C, Qiu Y, Freeman L, Cheng JF, Osorio J, Remaley A, Yang XP, Haudenschild C, Prades C, Chimini G, Blackmon E, Francois T, Duverger N, et al. Complete genomic sequence of the human ABCA1 gene: Analysis of the human and mouse ATP-binding cassette A promoter Proceedings of the National Academy of Sciences of the United States of America. 97: 7987-7992. PMID 10884428 DOI: 10.1073/pnas.97.14.7987 |
0.409 |
|
| 2000 |
Zhu Y, Jong MC, Frazer KA, Gong E, Krauss RM, Cheng JF, Boffelli D, Rubin EM. Genomic interval engineering of mice identifies a novel modulator of triglyceride production. Proceedings of the National Academy of Sciences of the United States of America. 97: 1137-42. PMID 10655497 DOI: 10.1073/PNAS.97.3.1137 |
0.465 |
|
| 1997 |
Frazer KA, Ueda Y, Zhu Y, Gifford VR, Garofalo MR, Mohandas N, Martin CH, Palazzolo MJ, Cheng JF, Rubin EM. Computational and biological analysis of 680 kb of DNA sequence from the human 5q31 cytokine gene cluster region. Genome Research. 7: 495-512. PMID 9149945 |
0.535 |
|
| 1996 |
Chiang PW, Wang S, Smithivas P, Song WJ, Ramamoorthy S, Hillman J, Puett S, Van Keuren ML, Crombez E, Kumar A, Glover TW, Miller DE, Tsai CH, Blackburn CC, Chen XN, ... ... Cheng JF, et al. Identification and analysis of the human and murine putative chromatin structure regulator SUPT6H and Supt6h. Genomics. 34: 328-33. PMID 8786132 DOI: 10.1006/geno.1996.0294 |
0.357 |
|
| 1995 |
Cheng JF, Boyartchuk V, Zhu Y. Isolation and mapping of human chromosome 21 cDNA: progress in constructing a chromosome 21 expression map. Genomics. 23: 75-84. PMID 7829105 DOI: 10.1006/geno.1994.1461 |
0.425 |
|
| 1995 |
Valhmu WB, Palmer GD, Rivers PA, Ebara S, Cheng JF, Fischer S, Ratcliffe A. Structure of the human aggrecan gene: exon-intron organization and association with the protein domains. The Biochemical Journal. 535-42. PMID 7626017 DOI: 10.1042/bj3090535 |
0.384 |
|
| 1994 |
Cheng JF, Zhu Y. Reverse transcription-polymerase chain reaction detection of transcribed sequences on human chromosome 21. Genomics. 20: 184-90. PMID 7517386 DOI: 10.1006/geno.1994.1152 |
0.373 |
|
| 1991 |
Krane DE, Clark AG, Cheng JF, Hardison RC. Subfamily relationships and clustering of rabbit C repeats Molecular Biology and Evolution. 8: 1-30. PMID 2002760 DOI: 10.1093/Oxfordjournals.Molbev.A040631 |
0.695 |
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| 1991 |
Hardison R, Krane D, Vandenbergh D, Cheng JF, Mansberger J, Taddie J, Schwartz S, Huang X, Miller W. Sequence and comparative analysis of the rabbit α-like globin gene cluster reveals a rapid mode of evolution in a G + C-rich region of mammalian genomes Journal of Molecular Biology. 222: 233-249. PMID 1960725 DOI: 10.1016/0022-2836(91)90209-O |
0.681 |
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| 1988 |
Cheng JF, Hardison RC. The rabbit α-like globin gene cluster is polymorphic both in the sizes of BamHI fragments and in the numbers of duplicated sets of genes Molecular Biology and Evolution. 5: 486-498. PMID 2904112 DOI: 10.1093/Oxfordjournals.Molbev.A040511 |
0.694 |
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| 1988 |
Cheng JF, Krane DE, Hardison RC. Nucleotide sequence and expression of rabbit globin genes ζ1, ζ2, and ζ3. Pseudogenes generated by block duplications are transcriptionally competent Journal of Biological Chemistry. 263: 9981-9993. PMID 2838486 |
0.706 |
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| 1987 |
Cheng JF, Raid L, Hardison RC. Block duplications of a zeta-zeta-alpha-theta gene set in the rabbit alpha-like globin gene cluster Journal of Biological Chemistry. 262: 5414-5421. PMID 3031053 |
0.671 |
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| 1986 |
Hardison RC, Sawada I, Cheng JF, Shen CK, Schmid CW. A previously undetected pseudogene in the human alpha globin gene cluster. Nucleic Acids Research. 14: 1903-11. PMID 3952001 DOI: 10.1093/Nar/14.4.1903 |
0.629 |
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| 1984 |
Cheng JF, Printz R, Callaghan T, Shuey D, Hardison RC. The rabbit C family of short, interspersed repeats. Nucleotide sequence determination and transcriptional analysis Journal of Molecular Biology. 176: 1-20. PMID 6204060 DOI: 10.1016/0022-2836(84)90379-6 |
0.634 |
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