| Year |
Citation |
Score |
| 2023 |
Foxall RL, Means J, Marcinkiewicz AL, Schillaci C, DeRosia-Banick K, Xu F, Hall JA, Jones SH, Cooper VS, Whistler CA. . Mbio. e0285123. PMID 38112441 DOI: 10.1128/mbio.02851-23 |
0.3 |
|
| 2023 |
Muraski MJ, Nilsson EM, Fritz MJ, Richardson AR, Alexander RW, Cooper VS. Adaptation to Overflow Metabolism by Mutations That Impair tRNA Modification in Experimentally Evolved Bacteria. Mbio. e0028723. PMID 36853041 DOI: 10.1128/mbio.00287-23 |
0.372 |
|
| 2022 |
Scribner MR, Stephens AC, Huong JL, Richardson AR, Cooper VS. The nutritional environment is sufficient to select coexisting biofilm and quorum-sensing mutants of . Journal of Bacteriology. JB0044421. PMID 34978461 DOI: 10.1128/JB.00444-21 |
0.5 |
|
| 2021 |
Rana A, Patton D, Turner NT, Dillon MM, Cooper VS, Sung W. Precise measurement of the fitness effects of spontaneous mutations by droplet digital PCR in Burkholderia cenocepacia. Genetics. 219. PMID 34849876 DOI: 10.1093/genetics/iyab117 |
0.314 |
|
| 2021 |
Armbruster CR, Marshall CW, Garber AI, Melvin JA, Zemke AC, Moore J, Zamora PF, Li K, Fritz IL, Manko CD, Weaver ML, Gaston JR, Morris A, Methé B, DePas WH, ... ... Cooper VS, et al. Adaptation and genomic erosion in fragmented Pseudomonas aeruginosa populations in the sinuses of people with cystic fibrosis. Cell Reports. 37: 109829. PMID 34686349 DOI: 10.1016/j.celrep.2021.109829 |
0.397 |
|
| 2021 |
Kessler C, Mhatre E, Cooper V, Kim W. Evolutionary divergence of the Wsp signal transduction system in β- and γ-proteobacteria. Applied and Environmental Microbiology. AEM0130621. PMID 34495711 DOI: 10.1128/AEM.01306-21 |
0.38 |
|
| 2021 |
Santos-Lopez A, Marshall CW, Haas AL, Turner CB, Rasero J, Cooper VS. The roles of history, chance, and natural selection in the evolution of antibiotic resistance. Elife. 10. PMID 34431477 DOI: 10.7554/eLife.70676 |
0.592 |
|
| 2021 |
Harris KB, Flynn KM, Cooper VS. Polygenic adaptation and clonal interference enable sustained diversity in experimental Pseudomonas aeruginosa populations. Molecular Biology and Evolution. PMID 34410431 DOI: 10.1093/molbev/msab248 |
0.743 |
|
| 2021 |
Schaefers MM, Wang BX, Boisvert NM, Martini SJ, Bonney SL, Marshall CW, Laub MT, Cooper VS, Priebe GP. Evolution towards Virulence in a Two-Component System. Mbio. e0182321. PMID 34372701 DOI: 10.1128/mBio.01823-21 |
0.384 |
|
| 2021 |
Marshall CW, Gloag ES, Lim C, Wozniak DJ, Cooper VS. Rampant prophage movement among transient competitors drives rapid adaptation during infection. Science Advances. 7. PMID 34272240 DOI: 10.1126/sciadv.abh1489 |
0.324 |
|
| 2021 |
Marshall CW, Gloag ES, Lim C, Wozniak DJ, Cooper VS. Rampant prophage movement among transient competitors drives rapid adaptation during infection. Science Advances. 7. PMID 34272240 DOI: 10.1126/sciadv.abh1489 |
0.324 |
|
| 2020 |
Bruger EL, Synder DJ, Cooper VS, Waters CM. Quorum sensing provides a molecular mechanism for evolution to tune and maintain investment in cooperation. The Isme Journal. PMID 33342998 DOI: 10.1038/s41396-020-00847-0 |
0.415 |
|
| 2020 |
Hassan AA, Dos Santos SC, Cooper VS, Sá-Correia I. Comparative Evolutionary Patterns of and During Chronic Co-infection of a Cystic Fibrosis Patient Lung. Frontiers in Microbiology. 11: 574626. PMID 33101250 DOI: 10.3389/fmicb.2020.574626 |
0.326 |
|
| 2020 |
Mhatre E, Snyder DJ, Sileo E, Turner CB, Buskirk SW, Fernandez NL, Neiditch MB, Waters CM, Cooper VS. One gene, multiple ecological strategies: A biofilm regulator is a capacitor for sustainable diversity. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817433 DOI: 10.1073/Pnas.2008540117 |
0.613 |
|
| 2020 |
Scribner MR, Santos-Lopez A, Marshall CW, Deitrick C, Cooper VS. Parallel Evolution of Tobramycin Resistance across Species and Environments. Mbio. 11. PMID 32457248 DOI: 10.1128/mBio.00932-20 |
0.424 |
|
| 2020 |
Cooper VS, Honsa E, Rowe H, Deitrick C, Iverson AR, Whittall JJ, Neville SL, McDevitt CA, Kietzman C, Rosch JW. Experimental Evolution To Identify Selective Pressures during Pneumococcal Colonization. Msystems. 5. PMID 32398278 DOI: 10.1128/mSystems.00352-20 |
0.442 |
|
| 2019 |
Morgenthaler AB, Kinney WR, Ebmeier CC, Walsh CM, Snyder DJ, Cooper VS, Old WM, Copley SD. Mutations that improve efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome. Elife. 8. PMID 31815667 DOI: 10.7554/Elife.53535 |
0.331 |
|
| 2019 |
Turner CB, Buskirk SW, Harris KB, Cooper VS. Negative frequency-dependent selection maintains coexisting genotypes during fluctuating selection. Molecular Ecology. PMID 31725941 DOI: 10.1111/mec.15307 |
0.649 |
|
| 2019 |
Santos-Lopez A, Marshall CW, Scribner MR, Snyder DJ, Cooper VS. Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle. Elife. 8. PMID 31516122 DOI: 10.7554/eLife.47612 |
0.426 |
|
| 2019 |
Hall AE, Karkare K, Cooper VS, Bank C, Cooper TF, Moore FB. Environment changes epistasis to alter trade-offs along alternative evolutionary paths. Evolution; International Journal of Organic Evolution. PMID 31418459 DOI: 10.1111/Evo.13825 |
0.722 |
|
| 2019 |
Gloag ES, Marshall CW, Snyder D, Lewin GR, Harris JS, Santos-Lopez A, Chaney SB, Whiteley M, Cooper VS, Wozniak DJ. Pseudomonas aeruginosa Interstrain Dynamics and Selection of Hyperbiofilm Mutants during a Chronic Infection. Mbio. 10. PMID 31409682 DOI: 10.1128/Mbio.01698-19 |
0.347 |
|
| 2018 |
Turner CB, Marshall CW, Cooper VS. Parallel genetic adaptation across environments differing in mode of growth or resource availability. Evolution Letters. 2: 355-367. PMID 30283687 DOI: 10.1002/evl3.75 |
0.594 |
|
| 2018 |
Kristofich J, Morgenthaler AB, Kinney WR, Ebmeier CC, Snyder DJ, Old WM, Cooper VS, Copley SD. Synonymous mutations make dramatic contributions to fitness when growth is limited by a weak-link enzyme. Plos Genetics. 14: e1007615. PMID 30148850 DOI: 10.1371/Journal.Pgen.1007615 |
0.325 |
|
| 2018 |
Dillon MM, Sung W, Lynch M, Cooper VS. Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing. Mbio. 9. PMID 30131359 DOI: 10.1128/Mbio.01371-18 |
0.34 |
|
| 2018 |
Silva IN, Pessoa FD, Ramires MJ, Santos MR, Becker JD, Cooper VS, Moreira LM. OmpR regulator of controls mucoid-to-nonmucoid transition and other cell envelope properties associated with persistence in the cystic fibrosis lung. Journal of Bacteriology. PMID 29914989 DOI: 10.1128/JB.00216-18 |
0.307 |
|
| 2018 |
Cooper VS. Experimental Evolution as a High-Throughput Screen for Genetic Adaptations. Msphere. 3. PMID 29743200 DOI: 10.1128/mSphere.00121-18 |
0.461 |
|
| 2017 |
Lucas A, Ito R, Mustapha MM, McElheny CL, Mettus R, Bowler SL, Kantz SF, Pacey MP, Pasculle AW, Cooper VS, Doi Y. Frequency and mechanisms of spontaneous fosfomycin non-susceptibility observed upon disk diffusion testing of Escherichia coli. Journal of Clinical Microbiology. PMID 29093108 DOI: 10.1093/Ofid/Ofx163.179 |
0.364 |
|
| 2017 |
Pankey MS, Foxall RL, Ster IM, Perry LA, Schuster BM, Donner RA, Coyle M, Cooper VS, Whistler CA. Host-selected mutations converging on a global regulator drive an adaptive leap by bacteria to symbiosis. Elife. 6. PMID 28447935 DOI: 10.7554/Elife.24414 |
0.389 |
|
| 2017 |
Honsa ES, Cooper VS, Mhaissen MN, Frank M, Shaker J, Iverson A, Rubnitz J, Hayden RT, Lee RE, Rock CO, Tuomanen EI, Wolf J, Rosch JW. RelA Mutant Enterococcus faecium with Multiantibiotic Tolerance Arising in an Immunocompromised Host. Mbio. 8. PMID 28049149 DOI: 10.1128/Mbio.02124-16 |
0.391 |
|
| 2016 |
Silva IN, Santos PM, Santos MR, Zlosnik JE, Speert DP, Buskirk SW, Bruger EL, Waters CM, Cooper VS, Moreira LM. Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection. Msystems. 1. PMID 27822534 DOI: 10.1128/mSystems.00029-16 |
0.441 |
|
| 2016 |
Dillon MM, Sung W, Sebra R, Lynch M, Cooper VS. Genome-wide biases in the rate and molecular spectrum of spontaneous mutations in Vibrio cholerae and Vibrio fischeri. Molecular Biology and Evolution. PMID 27744412 DOI: 10.1093/Molbev/Msw224 |
0.377 |
|
| 2016 |
Dillon MM, Cooper VS. The Fitness Effects of Spontaneous Mutations Nearly Unseen by Selection in a Bacterium with Multiple Chromosomes. Genetics. PMID 27672096 DOI: 10.1534/genetics.116.193060 |
0.395 |
|
| 2016 |
Sung W, Ackerman MS, Dillon MM, Platt TG, Fuqua C, Cooper VS, Lynch M. Evolution of the Insertion-Deletion Mutation Rate Across the Tree of Life. G3 (Bethesda, Md.). PMID 27317782 DOI: 10.1534/G3.116.030890 |
0.41 |
|
| 2016 |
Wang Y, Diaz Arenas C, Stoebel DM, Flynn K, Knapp E, Dillon MM, Wünsche A, Hatcher PJ, Moore FB, Cooper VS, Cooper TF. Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness. Proceedings of the National Academy of Sciences of the United States of America. 113: 5047-52. PMID 27091964 DOI: 10.1073/Pnas.1524988113 |
0.777 |
|
| 2016 |
Martin M, Hölscher T, Dragoš A, Cooper VS, Kovács ÁT. Laboratory evolution of microbial interactions in bacterial biofilms. Journal of Bacteriology. PMID 27044625 DOI: 10.1128/JB.01018-15 |
0.374 |
|
| 2016 |
Flynn KM, Dowell G, Johnson TM, Koestler BJ, Waters CM, Cooper VS. The evolution of ecological diversity in biofilms of Pseudomonas aeruginosa by altered cyclic diguanylate signaling. Journal of Bacteriology. PMID 27021563 DOI: 10.1128/Jb.00048-16 |
0.706 |
|
| 2016 |
Dillon MM, Rouillard NP, Van Dam B, Gallet R, Cooper VS. Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations. Evolution; International Journal of Organic Evolution. 70: 586-599. PMID 26995338 DOI: 10.1111/evo.12868 |
0.468 |
|
| 2016 |
Dillon MM, Rouillard NP, Van Dam B, Gallet R, Cooper VS. Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations Evolution. DOI: 10.1111/evo.12868 |
0.348 |
|
| 2015 |
Dillon MM, Sung W, Lynch M, Cooper VS. The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia. Genetics. 200: 935-46. PMID 25971664 DOI: 10.1534/Genetics.115.176834 |
0.319 |
|
| 2015 |
O'Rourke D, FitzGerald CE, Traverse CC, Cooper VS. There and back again: consequences of biofilm specialization under selection for dispersal. Frontiers in Genetics. 6: 18. PMID 25717335 DOI: 10.3389/fgene.2015.00018 |
0.479 |
|
| 2015 |
Ellis CN, Traverse CC, Mayo-Smith L, Buskirk SW, Cooper VS. Character displacement and the evolution of niche complementarity in a model biofilm community. Evolution; International Journal of Organic Evolution. 69: 283-93. PMID 25494960 DOI: 10.1111/Evo.12581 |
0.686 |
|
| 2014 |
Turner PE, Williams ES, Okeke C, Cooper VS, Duffy S, Wertz JE. Antibiotic resistance correlates with transmission in plasmid evolution. Evolution; International Journal of Organic Evolution. 68: 3368-80. PMID 25351426 DOI: 10.1111/Evo.12537 |
0.498 |
|
| 2014 |
Cooper VS, Staples RK, Traverse CC, Ellis CN. Parallel evolution of small colony variants in Burkholderia cenocepacia biofilms. Genomics. 104: 447-52. PMID 25263109 DOI: 10.1016/J.Ygeno.2014.09.007 |
0.683 |
|
| 2014 |
Cooper VS. The origins of specialization: insights from bacteria held 25 years in captivity. Plos Biology. 12: e1001790. PMID 24558348 DOI: 10.1371/journal.pbio.1001790 |
0.448 |
|
| 2013 |
Flynn KM, Cooper TF, Moore FB, Cooper VS. The environment affects epistatic interactions to alter the topology of an empirical fitness landscape. Plos Genetics. 9: e1003426. PMID 23593024 DOI: 10.1371/Journal.Pgen.1003426 |
0.768 |
|
| 2013 |
Traverse CC, Mayo-Smith LM, Poltak SR, Cooper VS. Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infections. Proceedings of the National Academy of Sciences of the United States of America. 110: E250-9. PMID 23271804 DOI: 10.1073/Pnas.1207025110 |
0.733 |
|
| 2012 |
Ellis CN, Schuster BM, Striplin MJ, Jones SH, Whistler CA, Cooper VS. Influence of seasonality on the genetic diversity of Vibrio parahaemolyticus in New Hampshire shellfish waters as determined by multilocus sequence analysis. Applied and Environmental Microbiology. 78: 3778-82. PMID 22407686 DOI: 10.1128/Aem.07794-11 |
0.568 |
|
| 2011 |
Schuster BM, Tyzik AL, Donner RA, Striplin MJ, Almagro-Moreno S, Jones SH, Cooper VS, Whistler CA. Ecology and genetic structure of a northern temperate Vibrio cholerae population related to toxigenic isolates. Applied and Environmental Microbiology. 77: 7568-75. PMID 21926213 DOI: 10.1128/AEM.00378-11 |
0.32 |
|
| 2011 |
Abebe E, Abebe-Akele F, Morrison J, Cooper V, Thomas WK. An insect pathogenic symbiosis between a Caenorhabditis and Serratia. Virulence. 2: 158-61. PMID 21389770 DOI: 10.4161/Viru.2.2.15337 |
0.343 |
|
| 2011 |
Poltak SR, Cooper VS. Ecological succession in long-term experimentally evolved biofilms produces synergistic communities. The Isme Journal. 5: 369-78. PMID 20811470 DOI: 10.1038/Ismej.2010.136 |
0.707 |
|
| 2010 |
Flynn KM, Vohr SH, Hatcher PJ, Cooper VS. Evolutionary rates and gene dispensability associate with replication timing in the archaeon Sulfolobus islandicus. Genome Biology and Evolution. 2: 859-69. PMID 20978102 DOI: 10.1093/Gbe/Evq068 |
0.587 |
|
| 2010 |
Ellis CN, Cooper VS. Experimental adaptation of Burkholderia cenocepacia to onion medium reduces host range. Applied and Environmental Microbiology. 76: 2387-96. PMID 20154121 DOI: 10.1128/Aem.01930-09 |
0.618 |
|
| 2002 |
Cooper VS. Long-term experimental evolution in Escherichia coli. X. Quantifying the fundamental and realized niche. Bmc Evolutionary Biology. 2: 12. PMID 12199912 DOI: 10.1186/1471-2148-2-12 |
0.333 |
|
| 2001 |
Cooper VS, Bennett AF, Lenski RE. Evolution of thermal dependence of growth rate of Escherichia coli populations during 20,000 generations in a constant environment. Evolution; International Journal of Organic Evolution. 55: 889-96. PMID 11430649 DOI: 10.1554/0014-3820(2001)055[0889:Eotdog]2.0.Co;2 |
0.558 |
|
| 2001 |
Cooper VS, Schneider D, Blot M, Lenski RE. Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B. Journal of Bacteriology. 183: 2834-41. PMID 11292803 DOI: 10.1128/Jb.183.9.2834-2841.2001 |
0.598 |
|
| 2001 |
Riley MS, Cooper VS, Lenski RE, Forney LJ, Marsh TL. Rapid phenotypic change and diversification of a soil bacterium during 1000 generations of experimental evolution. Microbiology (Reading, England). 147: 995-1006. PMID 11283295 DOI: 10.1099/00221287-147-4-995 |
0.595 |
|
| 2000 |
Cooper VS, Lenski RE. The population genetics of ecological specialization in evolving Escherichia coli populations. Nature. 407: 736-9. PMID 11048718 DOI: 10.1038/35037572 |
0.641 |
|
| 1998 |
Turner PE, Cooper VS, Lenski RE. TRADEOFF BETWEEN HORIZONTAL AND VERTICAL MODES OF TRANSMISSION IN BACTERIAL PLASMIDS. Evolution; International Journal of Organic Evolution. 52: 315-329. PMID 28568337 DOI: 10.1111/J.1558-5646.1998.Tb01634.X |
0.601 |
|
| 1998 |
Turner PE, Cooper VS, Lenski RE. Tradeoff between horizontal and vertical modes of transmission in bacterial plasmids Evolution. 52: 315-329. |
0.561 |
|
| 1996 |
Elena SF, Cooper VS, Lenski RE. Response: mechanisms of punctuated evolution. Science (New York, N.Y.). 274: 1749-50. PMID 17842245 DOI: 10.1126/Science.274.5293.1749 |
0.446 |
|
| 1996 |
Coyne JA, Charlesworth B, Elena SF, Cooper VS, Lenski RE. Mechanisms of punctuated evolution Science. 274: 1748-1750. PMID 8984635 DOI: 10.1126/Science.274.5293.1748 |
0.474 |
|
| 1996 |
Elena SF, Cooper VS, Lenski RE. Punctuated evolution caused by selection of rare beneficial mutations. Science (New York, N.Y.). 272: 1802-4. PMID 8650581 DOI: 10.1126/Science.272.5269.1802 |
0.64 |
|
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