Kenneth J. Breslauer - Publications

Affiliations: 
Chemistry & Chemical Biology Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
DNA
Website:
http://molbiosci.rutgers.edu/faculty/breslauer.html

149 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sidorenko VS, Cohen I, Dorjee K, Minetti CA, Remeta DP, Gao J, Potapova I, Wang HZ, Hearing J, Yen WY, Kim HK, Hashimoto K, Moriya M, Dickman KG, Yin X, ... ... Breslauer KJ, et al. Mechanisms of Antiviral Action and Toxicities of Ipecac Alkaloids: Emetine and Dehydroemetine Exhibit Anti-coronaviral Activities at Non-Cardiotoxic Concentrations. Virus Research. 199322. PMID 38228190 DOI: 10.1016/j.virusres.2024.199322  0.76
2023 Völker J, Breslauer KJ. How sequence alterations enhance the stability and delay expansion of DNA triplet repeat domains. Qrb Discovery. 4: e8. PMID 37965436 DOI: 10.1017/qrd.2023.6  0.766
2022 Liu AY, Minetti CA, Remeta DP, Breslauer KJ, Chen KY. HSF1, Aging, and Neurodegeneration. Advances in Experimental Medicine and Biology. PMID 35995906 DOI: 10.1007/5584_2022_733  0.764
2020 Klump HH, Völker J, Breslauer KJ. Energy mapping of the genetic code and genomic domains: implications for code evolution and molecular Darwinism - CORRIGENDUM. Quarterly Reviews of Biophysics. 53: e14. PMID 33298235 DOI: 10.1017/S0033583520000116  0.743
2020 Klump HH, Völker J, Breslauer KJ. Energy mapping of the genetic code and genomic domains: implications for code evolution and molecular Darwinism. Quarterly Reviews of Biophysics. 53: e11. PMID 33143792 DOI: 10.1017/S0033583520000098  0.768
2020 Völker J, Plum GE, Breslauer KJ. Heat Capacity Changes (ΔCp) for Interconversions Between Differentially-Ordered DNA States within Physiological Temperature Domains: Implications for Biological Regulatory Switches. The Journal of Physical Chemistry. B. PMID 32531155 DOI: 10.1021/Acs.Jpcb.0C04065  0.82
2019 Völker J, Plum GE, Gindikin V, Breslauer KJ. Dynamic DNA Energy Landscapes and Substrate Complexity in Triplet Repeat Expansion and DNA Repair. Biomolecules. 9. PMID 31698848 DOI: 10.3390/biom9110709  0.825
2018 Minetti CA, Sun JY, Jacobs DP, Kang I, Remeta DP, Breslauer KJ. Impact of bistrand abasic sites and proximate orientation on DNA global structure and duplex energetics. Biopolymers. PMID 29322505 DOI: 10.1002/Bip.23098  0.805
2015 Minetti CA, Remeta DP, Iden CR, Johnson F, Grollman AP, Breslauer KJ. Impact of thymine glycol damage on DNA duplex energetics: Correlations with lesion-induced biochemical and structural consequences. Biopolymers. 103: 491-508. PMID 25991500 DOI: 10.1002/Bip.22680  0.81
2015 Charnavets T, Nunvar J, Ne?asová I, Völker J, Breslauer KJ, Schneider B. Conformational diversity of single-stranded DNA from bacterial repetitive extragenic palindromes: Implications for the DNA recognition elements of transposases. Biopolymers. PMID 25951997 DOI: 10.1002/Bip.22666  0.79
2014 Li M, Völker J, Breslauer KJ, Wilson DM. APE1 incision activity at abasic sites in tandem repeat sequences. Journal of Molecular Biology. 426: 2183-98. PMID 24703901 DOI: 10.1016/J.Jmb.2014.03.014  0.774
2014 Völker J, Plum GE, Gindikin V, Klump HH, Breslauer KJ. Impact of bulge loop size on DNA triplet repeat domains: Implications for DNA repair and expansion. Biopolymers. 101: 1-12. PMID 23494673 DOI: 10.1002/Bip.22236  0.817
2013 Braunlin W, Völker J, Plum GE, Breslauer KJ. DNA meter: Energy tunable, quantitative hybridization assay. Biopolymers. 99: 408-17. PMID 23529692 DOI: 10.1002/Bip.22213  0.817
2013 Völker J, Gindikin V, Klump HH, Plum GE, Breslauer KJ. Energy Landscapes of Triplet Repeat DNA Bulge Loops: Implications for DNA Expansion and Disease States Biophysical Journal. 104: 77a. DOI: 10.1016/J.Bpj.2012.11.461  0.826
2013 Braunlin W, Völker J, Plum E, Breslauer KJ. Energy-Tunable Quantitative Hybridization Assay Biophysical Journal. 104: 260a. DOI: 10.1016/J.Bpj.2012.11.1460  0.804
2013 Völker J, Plum GE, Gindikin V, Klump HH, Breslauer KJ. Erratum: “Impact of bulge loop size on DNA triplet repeat domains: Implications for DNA repair and expansion” Biopolymers 101(1), 1-12, (2014) Biopolymers. 101: 439-439. DOI: 10.1002/Bip.22451  0.812
2012 Völker J, Gindikin V, Klump HH, Plum GE, Breslauer KJ. Energy landscapes of dynamic ensembles of rolling triplet repeat bulge loops: implications for DNA expansion associated with disease states. Journal of the American Chemical Society. 134: 6033-44. PMID 22397401 DOI: 10.1021/Ja3010896  0.824
2011 Lukin M, Minetti CA, Remeta DP, Attaluri S, Johnson F, Breslauer KJ, de Los Santos C. Novel post-synthetic generation, isomeric resolution, and characterization of Fapy-dG within oligodeoxynucleotides: differential anomeric impacts on DNA duplex properties. Nucleic Acids Research. 39: 5776-89. PMID 21415012 DOI: 10.1093/Nar/Gkr082  0.824
2010 Völker J, Plum GE, Klump HH, Breslauer KJ. Energy crosstalk between DNA lesions: implications for allosteric coupling of DNA repair and triplet repeat expansion pathways. Journal of the American Chemical Society. 132: 4095-7. PMID 20218680 DOI: 10.1021/Ja1002857  0.818
2010 Minetti CA, Remeta DP, Dickstein R, Breslauer KJ. Energetic signatures of single base bulges: thermodynamic consequences and biological implications. Nucleic Acids Research. 38: 97-116. PMID 19946018 DOI: 10.1093/Nar/Gkp1036  0.831
2010 Minetti CA, Remeta DP, Johnson F, Iden CR, Breslauer KJ. Impact of alpha-hydroxy-propanodeoxyguanine adducts on DNA duplex energetics: opposite base modulation and implications for mutagenicity and genotoxicity. Biopolymers. 93: 370-82. PMID 19937758 DOI: 10.1002/Bip.21355  0.8
2010 Völker J, Plum GE, Klump HH, Breslauer KJ. Energetic coupling between clustered lesions modulated by intervening triplet repeat bulge loops: allosteric implications for DNA repair and triplet repeat expansion. Biopolymers. 93: 355-69. PMID 19890964 DOI: 10.1002/Bip.21343  0.816
2009 Völker J, Plum GE, Klump HH, Breslauer KJ. DNA repair and DNA triplet repeat expansion: the impact of abasic lesions on triplet repeat DNA energetics. Journal of the American Chemical Society. 131: 9354-60. PMID 19566100 DOI: 10.1021/Ja902161E  0.834
2008 Völker J, Klump HH, Breslauer KJ. DNA energy landscapes via calorimetric detection of microstate ensembles of metastable macrostates and triplet repeat diseases. Proceedings of the National Academy of Sciences of the United States of America. 105: 18326-30. PMID 19015511 DOI: 10.1073/Pnas.0810376105  0.837
2008 Minetti CA, Remeta DP, Breslauer KJ. A continuous hyperchromicity assay to characterize the kinetics and thermodynamics of DNA lesion recognition and base excision. Proceedings of the National Academy of Sciences of the United States of America. 105: 70-5. PMID 18172202 DOI: 10.1073/Pnas.0710363105  0.811
2007 Lee BJ, Barch M, Castner EW, Völker J, Breslauer KJ. Structure and dynamics in DNA looped domains: CAG triplet repeat sequence dynamics probed by 2-aminopurine fluorescence. Biochemistry. 46: 10756-66. PMID 17718541 DOI: 10.1021/Bi7005674  0.751
2007 Völker J, Klump HH, Breslauer KJ. DNA metastability and biological regulation: conformational dynamics of metastable omega-DNA bulge loops. Journal of the American Chemical Society. 129: 5272-80. PMID 17397164 DOI: 10.1021/Ja070258Q  0.831
2007 Plum GE, Breslauer DN, Breslauer KJ. High resolution protein-DNA binding energy landscapes via a novel high throughput method. Biopolymers. 85: vii-viii. PMID 17366530 DOI: 10.1002/Bip.20723  0.644
2007 Völker J, Klump HH, Breslauer KJ. The energetics of i-DNA tetraplex structures formed intermolecularly by d(TC5) and intramolecularly by d[(C5T3)3C5]. Biopolymers. 86: 136-47. PMID 17330895 DOI: 10.1002/Bip.20712  0.842
2007 Privalov PL, Dragan AI, Crane-Robinson C, Breslauer KJ, Remeta DP, Minetti CA. What drives proteins into the major or minor grooves of DNA? Journal of Molecular Biology. 365: 1-9. PMID 17055530 DOI: 10.1016/J.Jmb.2006.09.059  0.819
2005 Völker J, Breslauer KJ. Communication between noncontacting macromolecules. Annual Review of Biophysics and Biomolecular Structure. 34: 21-42. PMID 15869382 DOI: 10.1146/Annurev.Biophys.33.110502.133332  0.699
2004 Braunlin WH, Giri I, Beadling L, Breslauer KJ. Conformational screening of oligonucleotides by variable-temperature high performance liquid chromatography: dissecting the duplex-hairpin-coil equilibria of d(CGCGAATTCGCG). Biopolymers. 74: 221-31. PMID 15150797 DOI: 10.1002/Bip.20079  0.728
2003 Minetti CA, Remeta DP, Miller H, Gelfand CA, Plum GE, Grollman AP, Breslauer KJ. The thermodynamics of template-directed DNA synthesis: base insertion and extension enthalpies. Proceedings of the National Academy of Sciences of the United States of America. 100: 14719-24. PMID 14623953 DOI: 10.1073/Pnas.2336142100  0.824
2003 Minetti CA, Remeta DP, Zharkov DO, Plum GE, Johnson F, Grollman AP, Breslauer KJ. Energetics of lesion recognition by a DNA repair protein: thermodynamic characterization of formamidopyrimidine-glycosylase (Fpg) interactions with damaged DNA duplexes. Journal of Molecular Biology. 328: 1047-60. PMID 12729740 DOI: 10.1016/S0022-2836(03)00365-6  0.828
2002 Völker J, Makube N, Plum GE, Klump HH, Breslauer KJ. Conformational energetics of stable and metastable states formed by DNA triplet repeat oligonucleotides: implications for triplet expansion diseases. Proceedings of the National Academy of Sciences of the United States of America. 99: 14700-5. PMID 12417759 DOI: 10.1073/Pnas.222519799  0.83
2001 Plum GE, Breslauer KJ. Fluorescence energy transfer monitored competitive equilibria of nucleic acids: applications in thermodynamics and screening. Biopolymers. 61: 214-23. PMID 11987182 DOI: 10.1002/Bip.10147  0.623
2001 Völker J, Klump HH, Manning GS, Breslauer KJ. Counterion association with native and denatured nucleic acids: an experimental approach. Journal of Molecular Biology. 310: 1011-25. PMID 11501992 DOI: 10.1006/Jmbi.2001.4841  0.809
2001 Völker J, Klump HH, Breslauer KJ. Communication between noncontacting macromolecules. Proceedings of the National Academy of Sciences of the United States of America. 98: 7694-9. PMID 11438725 DOI: 10.1073/Pnas.141221298  0.8
2000 Pilch DS, Dunham SU, Jamieson ER, Lippard SJ, Breslauer KJ. DNA sequence context modulates the impact of a cisplatin 1,2-d(GpG) intrastrand cross-link on the conformational and thermodynamic properties of duplex DNA. Journal of Molecular Biology. 296: 803-12. PMID 10677282 DOI: 10.1006/Jmbi.2000.3496  0.467
2000 Breslauer K. Erratum: 'High-resolution calorimetric and optical melting profiles of DNA plasmids: Resolving contributions from intrinsic melting domains and specifically designed inserts,' (Biopolymers (1999) 50:3 (303-318)) Biopolymers. 53. DOI: 10.1002/(Sici)1097-0282(200001)53:1<112::Aid-Bip10>3.0.Co;2-L  0.373
1999 Plum GE, Gelfand CA, Breslauer KJ. Effects of 3,N4-ethenodeoxycytidine on duplex stability and energetics. Iarc Scientific Publications. 169-77. PMID 10626218  0.667
1999 Chalikian TV, Völker J, Srinivasan AR, Olson WK, Breslauer KJ. The hydration of nucleic acid duplexes as assessed by a combination of volumetric and structural techniques. Biopolymers. 50: 459-71. PMID 10479730 DOI: 10.1002/(Sici)1097-0282(19991015)50:5<459::Aid-Bip1>3.0.Co;2-B  0.822
1999 Völker J, Blake RD, Delcourt SG, Breslauer KJ. High-resolution calorimetric and optical melting profiles of DNA plasmids: resolving contributions from intrinsic melting domains and specifically designed inserts. Biopolymers. 50: 303-18. PMID 10397791 DOI: 10.1002/(Sici)1097-0282(199909)50:3<303::Aid-Bip6>3.0.Co;2-U  0.37
1999 Chalikian TV, Völker J, Plum GE, Breslauer KJ. A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques. Proceedings of the National Academy of Sciences of the United States of America. 96: 7853-8. PMID 10393911 DOI: 10.1073/Pnas.96.14.7853  0.812
1999 Gelfand CA, Plum GE, Mielewczyk S, Remeta DP, Breslauer KJ. A quantitative method for evaluating the stabilities of nucleic acids. Proceedings of the National Academy of Sciences of the United States of America. 96: 6113-8. PMID 10339550 DOI: 10.1073/Pnas.96.11.6113  0.794
1999 Yu C, Mielewczyk SS, Breslauer KJ, Kohn J. Tyrosine-PEG-derived poly(ether carbonate)s as new biomaterials. Part II: study of inverse temperature transitions. Biomaterials. 20: 265-72. PMID 10030603 DOI: 10.1016/S0142-9612(98)00170-7  0.781
1999 Pilch DS, Poklar N, Baird EE, Dervan PB, Breslauer KJ. The thermodynamics of polyamide-DNA recognition: hairpin polyamide binding in the minor groove of duplex DNA. Biochemistry. 38: 2143-51. PMID 10026298 DOI: 10.1021/Bi982628G  0.423
1998 Chalikian TV, Gindikin VS, Breslauer KJ. Hydration of diglycyl tripeptides with non-polar side chains: a volumetric study. Biophysical Chemistry. 75: 57-71. PMID 17027457 DOI: 10.1016/S0301-4622(98)00192-6  0.777
1998 Chalikian TV, Breslauer KJ. Volumetric properties of nucleic acids. Biopolymers. 48: 264-80. PMID 10699844 DOI: 10.1002/(Sici)1097-0282(1998)48:4<264::Aid-Bip6>3.3.Co;2-#  0.668
1998 Chalikian TV, Breslauer KJ. Volumetric properties of nucleic acids: Volumetric properties of nucleic acids Biopolymers. 48: 264-280. PMID 10699844 DOI: 10.1002/(Sici)1097-0282(1998)48:4<264::Aid-Bip6>3.0.Co;2-8  0.59
1998 Chalikian TV, Breslauer KJ. Thermodynamic analysis of biomolecules: a volumetric approach. Current Opinion in Structural Biology. 8: 657-64. PMID 9818272 DOI: 10.1016/S0959-440X(98)80159-0  0.634
1998 Gelfand CA, Plum GE, Grollman AP, Johnson F, Breslauer KJ. The impact of an exocyclic cytosine adduct on DNA duplex properties: significant thermodynamic consequences despite modest lesion-induced structural alterations. Biochemistry. 37: 12507-12. PMID 9730823 DOI: 10.1021/bi981090b  0.803
1998 Gelfand CA, Plum GE, Grollman AP, Johnson F, Breslauer KJ. Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence. Biochemistry. 37: 7321-7. PMID 9585546 DOI: 10.1021/bi9803372  0.817
1998 Xu Z, Li TK, Kim JS, LaVoie EJ, Breslauer KJ, Liu LF, Pilch DS. DNA minor groove binding-directed poisoning of human DNA topoisomerase I by terbenzimidazoles. Biochemistry. 37: 3558-66. PMID 9521677 DOI: 10.1021/Bi9727747  0.482
1997 Chalikian TV, Völker J, Anafi D, Breslauer KJ. The native and the heat-induced denatured states of alpha-chymotrypsinogen A: thermodynamic and spectroscopic studies. Journal of Molecular Biology. 274: 237-52. PMID 9398530 DOI: 10.1006/Jmbi.1997.1394  0.779
1997 Pilch DS, Xu Z, Sun Q, LaVoie EJ, Liu LF, Breslauer KJ. A terbenzimidazole that preferentially binds and conformationally alters structurally distinct DNA duplex domains: a potential mechanism for topoisomerase I poisoning. Proceedings of the National Academy of Sciences of the United States of America. 94: 13565-70. PMID 9391066 DOI: 10.1073/Pnas.94.25.13565  0.461
1997 Pilch DS, Yu C, Makhey D, LaVoie EJ, Srinivasan AR, Olson WK, Sauers RR, Breslauer KJ, Geacintov NE, Liu LF. Minor groove-directed and intercalative ligand-DNA interactions in the poisoning of human DNA topoisomerase I by protoberberine analogs. Biochemistry. 36: 12542-53. PMID 9376359 DOI: 10.1021/Bi971272Q  0.665
1997 Xu Z, Pilch DS, Srinivasan AR, Olson WK, Geacintov NE, Breslauer KJ. Modulation of nucleic acid structure by ligand binding: induction of a DNA.RNA.DNA hybrid triplex by DAPI intercalation. Bioorganic & Medicinal Chemistry. 5: 1137-47. PMID 9222508 DOI: 10.1016/S0968-0896(97)00050-3  0.614
1997 Liu Y, Breslauer K, Anderson S. 'Designing out' disulfide bonds: Thermodynamic properties of 30-51 cystine substitution mutants of bovine pancreatic trypsin inhibitor Biochemistry. 36: 5323-5335. PMID 9154914 DOI: 10.1021/Bi962423C  0.381
1997 Völker J, Osborne SE, Glick GD, Breslauer KJ. Thermodynamic properties of a conformationally constrained intramolecular DNA triple helix. Biochemistry. 36: 756-67. PMID 9020773 DOI: 10.1021/Bi962271L  0.76
1996 Tung CH, Breslauer KJ, Stein S. Stabilization of DNA triple-helix formation by appended cationic peptides. Bioconjugate Chemistry. 7: 529-31. PMID 8889011 DOI: 10.1021/Bc960040L  0.365
1996 Chalikian TV, Breslauer KJ. On volume changes accompanying conformational transitions of biopolymers Biopolymers. 39: 619-626. PMID 8875817 DOI: 10.1002/(Sici)1097-0282(199611)39:5<619::Aid-Bip1>3.0.Co;2-Z  0.597
1996 Gelfand CA, Plum GE, Grollman AP, Johnson F, Breslauer KJ. The impact of a bistrand abasic lesion on DNA duplex properties. Biopolymers. 38: 439-45. PMID 8867207 DOI: 10.1002/(Sici)1097-0282(199604)38:4<439::Aid-Bip1>3.0.Co;2-U  0.809
1996 Law SM, Eritja R, Goodman MF, Breslauer KJ. Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine. Biochemistry. 35: 12329-37. PMID 8823167 DOI: 10.1021/Bi9614545  0.379
1996 Mielewczyk SS, Breslauer KJ, Anachi RB, Brodsky B. Binding studies of a triple-helical peptide model of macrophage scavenger receptor to tetraplex nucleic acids. Biochemistry. 35: 11396-402. PMID 8784195 DOI: 10.1021/Bi960706Z  0.802
1996 Chalikian TV, Totrov M, Abagyan R, Breslauer KJ. The hydration of globular proteins as derived from volume and compressibility measurements: cross correlating thermodynamic and structural data. Journal of Molecular Biology. 260: 588-603. PMID 8759322 DOI: 10.1006/Jmbi.1996.0423  0.609
1996 Poklar N, Pilch DS, Lippard SJ, Redding EA, Dunham SU, Breslauer KJ. Influence of cisplatin intrastrand crosslinking on the conformation, thermal stability, and energetics of a 20-mer DNA duplex. Proceedings of the National Academy of Sciences of the United States of America. 93: 7606-11. PMID 8755522 DOI: 10.1073/Pnas.93.15.7606  0.456
1996 Pilch DS, Poklar N, Gelfand CA, Law SM, Breslauer KJ, Baird EE, Dervan PB. Binding of a hairpin polyamide in the minor groove of DNA: sequence-specific enthalpic discrimination. Proceedings of the National Academy of Sciences of the United States of America. 93: 8306-11. PMID 8710866 DOI: 10.1073/Pnas.93.16.8306  0.764
1996 Wei Z, Tung CH, Zhu T, Dickerhof WA, Breslauer KJ, Georgopoulos DE, Leibowitz MJ, Stein S. Hybridization properties of oligodeoxynucleotide pairs bridged by polyarginine peptides. Nucleic Acids Research. 24: 655-61. PMID 8604306 DOI: 10.1093/Nar/24.4.655  0.805
1996 Chalikian TV, Breslauer KJ. Compressibility as a means to detect and characterize globular protein states. Proceedings of the National Academy of Sciences of the United States of America. 93: 1012-4. PMID 8577705 DOI: 10.1073/Pnas.93.3.1012  0.612
1996 Chalikian TV, Gindikin VS, Breslauer KJ. Spectroscopic and volumetric investigation of cytochrome c unfolding at alkaline pH: characterization of the base-induced unfolded state at 25 degrees C. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 10: 164-70. PMID 8566538 DOI: 10.1096/Fasebj.10.1.8566538  0.79
1996 Osborne SE, Völker J, Stevens SY, Breslauer KJ, Glick GD. Design, synthesis, and analysis of disulfide cross-linked DNA duplexes Journal of the American Chemical Society. 118: 11993-12003. DOI: 10.1021/Ja962386C  0.732
1995 Plum GE, Breslauer KJ. Calorimetry of proteins and nucleic acids. Current Opinion in Structural Biology. 5: 682-90. PMID 8574705 DOI: 10.1016/0959-440X(95)80062-X  0.596
1995 Plum GE, Grollman AP, Johnson F, Breslauer KJ. Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex. Biochemistry. 34: 16148-60. PMID 8519772  0.634
1995 Pilch DS, Kirolos MA, Breslauer KJ. Berenil binding to higher ordered nucleic acid structures: complexation with a DNA and RNA triple helix. Biochemistry. 34: 16107-24. PMID 8519768 DOI: 10.1021/Bi00049A026  0.455
1995 Plum GE, Breslauer KJ. Thermodynamics of an intramolecular DNA triple helix: a calorimetric and spectroscopic study of the pH and salt dependence of thermally induced structural transitions. Journal of Molecular Biology. 248: 679-95. PMID 7752233 DOI: 10.1006/jmbi.1995.0251  0.626
1995 Plum GE, Pilch DS, Singleton SF, Breslauer KJ. Nucleic acid hybridization: triplex stability and energetics. Annual Review of Biophysics and Biomolecular Structure. 24: 319-50. PMID 7663120 DOI: 10.1146/Annurev.Bb.24.060195.001535  0.653
1995 Pilch DS, Kirolos MA, Liu X, Plum GE, Breslauer KJ. Berenil [1,3-bis(4'-amidinophenyl)triazene] binding to DNA duplexes and to a RNA duplex: evidence for both intercalative and minor groove binding properties. Biochemistry. 34: 9962-76. PMID 7632695 DOI: 10.1021/Bi00031A019  0.673
1995 Chalikian TV, Gindikin VS, Breslauer KJ. Volumetric characterizations of the native, molten globule and unfolded states of cytochrome c at acidic pH. Journal of Molecular Biology. 250: 291-306. PMID 7608975 DOI: 10.1006/Jmbi.1995.0377  0.788
1995 Pilch DS, Plum GE, Breslauer KJ. The thermodynamics of DNA structures that contain lesions or guanine tetrads. Current Opinion in Structural Biology. 5: 334-42. PMID 7583632 DOI: 10.1016/0959-440X(95)80095-6  0.684
1994 Chalikian TV, Sarvazyan AP, Plum GE, Breslauer KJ. Influence of base composition, base sequence, and duplex structure on DNA hydration: apparent molar volumes and apparent molar adiabatic compressibilities of synthetic and natural DNA duplexes at 25 degrees C. Biochemistry. 33: 2394-401. PMID 8117699  0.802
1994 Plum GE, Breslauer KJ. DNA lesions. A thermodynamic perspective. Annals of the New York Academy of Sciences. 726: 45-55; discussion 55. PMID 8092707 DOI: 10.1111/J.1749-6632.1994.Tb52796.X  0.669
1994 Chalikian TV, Plum GE, Sarvazyan AP, Breslauer KJ. Influence of drug binding on DNA hydration: acoustic and densimetric characterizations of netropsin binding to the poly(dAdT).poly(dAdT) and poly(dA).poly(dT) duplexes and the poly(dT).poly(dA).poly(dT) triplex at 25 degrees C. Biochemistry. 33: 8629-40. PMID 8038152 DOI: 10.1021/bi00195a003  0.784
1994 Chalikian TV, Sarvazyan AP, Breslauer KJ. Hydration and partial compressibility of biological compounds. Biophysical Chemistry. 51: 89-107; discussion 1. PMID 7919045 DOI: 10.1016/0301-4622(94)85007-0  0.706
1994 Pilch DS, Breslauer KJ. Ligand-induced formation of nucleic acid triple helices. Proceedings of the National Academy of Sciences of the United States of America. 91: 9332-6. PMID 7524074 DOI: 10.1073/Pnas.91.20.9332  0.393
1994 Chalikian TV, Sarvazyan AP, Funck T, Cain CA, Breslauer KJ. Partial molar characteristics of glycine and alanine in aqueous solutions at high pressures calculated from ultrasonic velocity data Journal of Physical Chemistry. 98: 321-328. DOI: 10.1021/J100052A053  0.703
1994 Chalikian TV, Sarvazyan AP, Funck T, Breslauer KJ. Partial molar volumes, expansibilities, and compressibilities of oligoglycines in aqueous solutions at 18-55°C Biopolymers. 34: 541-553. DOI: 10.1002/Bip.360340409  0.703
1993 Remeta DP, Mudd CP, Berger RL, Breslauer KJ. Thermodynamic characterization of daunomycin-DNA interactions: comparison of complete binding profiles for a series of DNA host duplexes. Biochemistry. 32: 5064-73. PMID 8494883 DOI: 10.1021/Bi00070A014  0.764
1993 Erie DA, Breslauer KJ, Olson WK. A Monte Carlo method for generating structures of short single-stranded DNA sequences. Biopolymers. 33: 75-105. PMID 8427940 DOI: 10.1002/Bip.360330109  0.743
1993 Erie DA, Suri AK, Breslauer KJ, Jones RA, Olson WK. Theoretical predictions of DNA hairpin loop conformations: correlations with thermodynamic and spectroscopic data. Biochemistry. 32: 436-54. PMID 8422353 DOI: 10.1021/Bi00053A008  0.768
1993 Zhu T, Wei Z, Tung CH, Dickerhof WA, Breslauer KJ, Georgopoulos DE, Leibowitz MJ, Stein S. Oligonucleotide-poly-L-ornithine conjugates: binding to complementary DNA and RNA. Antisense Research and Development. 3: 265-75. PMID 8286927 DOI: 10.1089/Ard.1993.3.265  0.795
1993 Tung CH, Breslauer KJ, Stein S. Polyamine-linked oligonucleotides for DNA triple helix formation. Nucleic Acids Research. 21: 5489-94. PMID 8265366 DOI: 10.1093/Nar/21.23.5489  0.483
1993 Jin R, Chapman WH, Srinivasan AR, Olson WK, Breslow R, Breslauer KJ. Comparative spectroscopic, calorimetric, and computational studies of nucleic acid complexes with 2',5"-versus 3',5"-phosphodiester linkages. Proceedings of the National Academy of Sciences of the United States of America. 90: 10568-72. PMID 8248146 DOI: 10.1073/Pnas.90.22.10568  0.805
1993 Chan SS, Breslauer KJ, Austin RH, Hogan ME. Thermodynamics and premelting conformational changes of phased (dA)5 tracts. Biochemistry. 32: 11776-84. PMID 8218248 DOI: 10.1021/Bi00095A005  0.405
1993 Zhu T, Tung CH, Breslauer KJ, Dickerhof WA, Stein S. Preparation and physical properties of conjugates of oligodeoxynucleotides with poly(delta)ornithine peptides. Antisense Research and Development. 3: 349-56. PMID 8155976 DOI: 10.1089/Ard.1993.3.349  0.766
1993 Sarvazyan A, Chalikian T, Breslauer KJ, Funck T, Belonenko V. A novel acoustical approach to biomedical thermodynamics The Journal of the Acoustical Society of America. 93: 2348-2348. DOI: 10.1121/1.406223  0.714
1993 Chalikian TV, Sarvazyan AP, Breslauer KJ. Partial molar volumes, expansibilities, and compressibilities of .alpha.,.omega.-aminocarboxylic acids in aqueous solutions between 18 and 55.degree.C The Journal of Physical Chemistry. 97: 13017-13026. DOI: 10.1021/J100151A061  0.71
1993 Chalikian TV, Sarvazyan AP, Breslauer KJ. Partial molar volumes, expansibilities, and compressibilities of α,ω-aminocarboxylic acids in aqueous solutions between 18 and 55°C Journal of Physical Chemistry. 97: 13017-13026.  0.665
1992 Jin R, Gaffney BL, Wang C, Jones RA, Breslauer KJ. Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T). Proceedings of the National Academy of Sciences of the United States of America. 89: 8832-6. PMID 1528900 DOI: 10.1073/Pnas.89.18.8832  0.797
1992 Plum GE, Grollman AP, Johnson F, Breslauer KJ. Influence of an exocyclic guanine adduct on the thermal stability, conformation, and melting thermodynamics of a DNA duplex. Biochemistry. 31: 12096-102. PMID 1457406  0.657
1992 Breslauer KJ, Freire E, Straume M. Calorimetry: a tool for DNA and ligand-DNA studies. Methods in Enzymology. 211: 533-67. PMID 1406326 DOI: 10.1016/0076-6879(92)11030-M  0.472
1992 Park YW, Breslauer KJ. Drug binding to higher ordered DNA structures: netropsin complexation with a nucleic acid triple helix. Proceedings of the National Academy of Sciences of the United States of America. 89: 6653-7. PMID 1321445 DOI: 10.1073/Pnas.89.14.6653  0.672
1991 Vesnaver G, Breslauer KJ. The contribution of DNA single-stranded order to the thermodynamics of duplex formation. Proceedings of the National Academy of Sciences of the United States of America. 88: 3569-73. PMID 2023903 DOI: 10.1073/Pnas.88.9.3569  0.731
1991 Park YW, Breslauer KJ. A spectroscopic and calorimetric study of the melting behaviors of a "bent" and a "normal" DNA duplex: [d(GA4T4C)]2 versus [d(GT4A4C)]2. Proceedings of the National Academy of Sciences of the United States of America. 88: 1551-5. PMID 1996356 DOI: 10.1073/Pnas.88.4.1551  0.635
1991 Remeta DP, Mudd CP, Berger RL, Breslauer KJ. Thermodynamic characterization of daunomycin-DNA interactions: microcalorimetric measurements of daunomycin-DNA binding enthalpies. Biochemistry. 30: 9799-809. PMID 1911765 DOI: 10.1021/Bi00104A032  0.764
1991 Wang Y, Jin R, Gaffney B, Jones RA, Breslauer KJ. Characterization by 1H NMR of glycosidic conformations in the tetramolecular complex formed by d(GGTTTTTGG). Nucleic Acids Research. 19: 4619-22. PMID 1891352 DOI: 10.1093/Nar/19.17.4619  0.79
1991 Breslauer KJ. A thermodynamic perspective of DNA bending Current Opinion in Structural Biology. 1: 416-422. DOI: 10.1016/0959-440X(91)90041-Q  0.452
1990 Plum GE, Park YW, Singleton SF, Dervan PB, Breslauer KJ. Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: a spectroscopic and calorimetric study. Proceedings of the National Academy of Sciences of the United States of America. 87: 9436-40. PMID 2251285 DOI: 10.1073/Pnas.87.23.9436  0.768
1990 Jin RZ, Breslauer KJ, Jones RA, Gaffney BL. Tetraplex formation of a guanine-containing nonameric DNA fragment. Science (New York, N.Y.). 250: 543-6. PMID 2237404 DOI: 10.1126/Science.2237404  0.829
1990 Chan SS, Breslauer KJ, Hogan ME, Kessler DJ, Austin RH, Ojemann J, Passner JM, Wiles NC. Physical studies of DNA premelting equilibria in duplexes with and without homo dA.dT tracts: correlations with DNA bending. Biochemistry. 29: 6161-71. PMID 2207065 DOI: 10.1021/Bi00478A008  0.43
1989 Snyder JG, Hartman NG, D'Estantoit BL, Kennard O, Remeta DP, Breslauer KJ. Binding of actinomycin D to DNA: evidence for a nonclassical high-affinity binding mode that does not require GpC sites. Proceedings of the National Academy of Sciences of the United States of America. 86: 3968-72. PMID 2726760 DOI: 10.1073/Pnas.86.11.3968  0.811
1989 Vesnaver G, Chang CN, Eisenberg M, Grollman AP, Breslauer KJ. Influence of abasic and anucleosidic sites on the stability, conformation, and melting behavior of a DNA duplex: correlations of thermodynamic and structural data. Proceedings of the National Academy of Sciences of the United States of America. 86: 3614-8. PMID 2726738 DOI: 10.1073/Pnas.86.10.3614  0.754
1989 Erie DA, Jones RA, Olson WK, Sinha NK, Breslauer KJ. Melting behavior of a covalently closed, single-stranded, circular DNA. Biochemistry. 28: 268-73. PMID 2706250 DOI: 10.1021/Bi00427A037  0.77
1989 Lee M, Shea RG, Hartley JA, Lown JW, Kissinger K, Dabrowiak JC, Vesnaver G, Breslauer KJ, Pon RT. Molecular recognition between oligopeptides and nucleic acids. Sequence specific binding of (4S)-(+)- and (4R)-(-)-dihydrokikumycin B to DNA deduced from 1H NMR, footprinting studies and thermodynamic data. Journal of Molecular Recognition : Jmr. 2: 6-17. PMID 2636895 DOI: 10.1002/Jmr.300020103  0.717
1989 Lee M, Shea RG, Hartley JA, Kissinger K, Pon RT, Vesnaver G, Breslauer KJ, Dabrowiak JC, Lown JW. Molecular recognition between oligopeptides and nucleic acids: sequence-specific binding of the naturally occurring antibiotic (4S)-(+)-anthelvencin A and its (4R)-(-) enantiomer to deoxyribonucleic acids deduced from proton NMR, footprinting, and thermodynamic data Journal of the American Chemical Society. 111: 345-354. DOI: 10.1021/Ja00183A052  0.678
1989 LEE M, SHEA RG, HARTLEY JA, KISSINGER K, PON RT, VESNAVER G, BRESLAUER KJ, DABROWIAK JC, LOWN JW. ChemInform Abstract: Molecular Recognition Between Oligopeptides and Nucleic Acids: Sequence-Specific Binding of the Naturally Occurring Antibiotic (4S)-(+)-Anthelvencin A and Its (4R)-(-) Enantiomer to Deoxyribonucleic Acids Deduced from 1H NMR, Footprin Cheminform. 20. DOI: 10.1002/chin.198916341  0.642
1988 Senior MM, Jones RA, Breslauer KJ. Influence of loop residues on the relative stabilities of DNA hairpin structures. Proceedings of the National Academy of Sciences of the United States of America. 85: 6242-6. PMID 3413094 DOI: 10.1073/Pnas.85.17.6242  0.415
1988 Senior M, Jones RA, Breslauer KJ. Influence of dangling thymidine residues on the stability and structure of two DNA duplexes. Biochemistry. 27: 3879-85. PMID 3408733 DOI: 10.1021/Bi00410A053  0.766
1988 Roe JA, Butler A, Scholler DM, Valentine JS, Marky L, Breslauer KJ. Differential scanning calorimetry of Cu,Zn-superoxide dismutase, the apoprotein, and its zinc-substituted derivatives. Biochemistry. 27: 950-8. PMID 2835081 DOI: 10.1021/Bi00403A017  0.57
1988 Jin R, Breslauer KJ. Characterization of the minor groove environment in a drug-DNA complex: bisbenzimide bound to the poly[d(AT)].poly[d(AT)]duplex. Proceedings of the National Academy of Sciences of the United States of America. 85: 8939-42. PMID 2461559 DOI: 10.1073/Pnas.85.23.8939  0.804
1988 Marky LA, Blumenfeld KS, Breslauer KJ. Differential effect of tetramethylammonium chloride and sodium chloride on duplex melting temperatures of deoxyoligonucleotides: Resolution of a salt effect into specific and non-specific components Canadian Journal of Chemistry. 66: 836-839. DOI: 10.1139/V88-145  0.594
1987 Marky LA, Kallenbach NR, McDonough KA, Seeman NC, Breslauer KJ. The melting behavior of a DNA junction structure: a calorimetric and spectroscopic study. Biopolymers. 26: 1621-34. PMID 3663876 DOI: 10.1002/Bip.360260912  0.639
1987 Marky LA, Breslauer KJ. Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves Biopolymers - Peptide Science Section. 26: 1601-1620. PMID 3663875 DOI: 10.1002/Bip.360260911  0.572
1987 Erie D, Sinha N, Olson W, Jones R, Breslauer K. A dumbbell-shaped, double-hairpin structure of DNA: A thermodynamic investigation Biochemistry. 26: 7150-7159. PMID 3427065 DOI: 10.1021/Bi00396A042  0.757
1987 Chou WY, Marky LA, Zaunczkowski D, Breslauer KJ. The thermodynamics of drug-dna interactions: Ethidium bromide and propidium iodide Journal of Biomolecular Structure and Dynamics. 5: 345-362. PMID 3271479 DOI: 10.1080/07391102.1987.10506399  0.626
1987 Marky LA, Breslauer KJ. Origins of netropsin binding affinity and specificity: correlations of thermodynamic and structural data Proceedings of the National Academy of Sciences of the United States of America. 84: 4359-4363. PMID 3037518 DOI: 10.1073/Pnas.84.13.4359  0.652
1987 Breslauer KJ, Remeta DP, Chou WY, Ferrante R, Curry J, Zaunczkowski D, Snyder JG, Marky LA. Enthalpy-entropy compensations in drug-DNA binding studies. Proceedings of the National Academy of Sciences of the United States of America. 84: 8922-6. PMID 2827160 DOI: 10.1073/Pnas.84.24.8922  0.818
1986 Sutherland JC, Lin BH, Mugavero J, Trunk J, Tomasz M, Santella R, Marky L, Breslauer KJ. Vacuum ultraviolet circular dichroism of double stranded nucleic acids. Photochemistry and Photobiology. 44: 295-301. PMID 3786449 DOI: 10.1111/J.1751-1097.1986.Tb04667.X  0.582
1986 Breslauer KJ, Frank R, Blocker H, Marky LA. Predicting DNA duplex stability from the base sequence Proceedings of the National Academy of Sciences of the United States of America. 83: 3746-3750. PMID 3459152 DOI: 10.1073/Pnas.83.11.3746  0.642
1985 Marky LA, Curry J, Breslauer KJ. Netropsin binding to polyd(AT) X polyd(AT) and to polydA X polydT: a comparative thermodynamic study Progress in Clinical and Biological Research. 172: 155-173. PMID 2986168  0.486
1985 MOSS RA, HENDRICKSON TF, SWARUP S, HUI Y, MARKY L, BRESLAUER KJ. ChemInform Abstract: TRANSMEMBRANE TRANSPORT OF 1-ANILINO-8-NAPHTHALENESULFONATE IN SIMPLE CATIONIC SURFACTANT VESICLES Chemischer Informationsdienst. 16. DOI: 10.1002/chin.198504169  0.454
1984 Moss RA, Hendrickson TF, Swarup S, Hui Y, Marky L, Breslauer KJ. Trans-membrane transport of 1-anilino-8-naphthalenesulfonate in simple cationic surfactant vesicles Tetrahedron Letters. 25: 4063-4066. DOI: 10.1016/S0040-4039(01)90182-0  0.514
1983 Marky LA, Snyder JG, Breslauer KJ. Calorimetric and spectroscopic investigation of drug-DNA interactions: II. Dipyrandlam binding to poly d(AT) Nucleic Acids Research. 11: 5701-5715. PMID 6889134 DOI: 10.1093/Nar/11.16.5701  0.765
1983 Marky LA, Blumenfeld KS, Kozlowski S, Breslauer KJ. Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCAATTCGCG): Evidence for hairpin formation Biopolymers. 22: 1247-1257. PMID 6850063 DOI: 10.1002/Bip.360220416  0.599
1983 Marky LA, Snyder JG, Remeta DP, Breslauer KJ. Thermodynamics of drug-dna interactions Journal of Biomolecular Structure and Dynamics. 1: 487-507. PMID 6400886 DOI: 10.1080/07391102.1983.10507457  0.815
1983 Marky LA, Blumenfeld KS, Breslauer KJ. Calorimetric and spectroscoptc investigation of drug - DNA interactions. I. The binding of netropsin to poly d(AT) Nucleic Acids Research. 11: 2857-2870. PMID 6304658 DOI: 10.1093/Nar/11.9.2857  0.643
1982 Marky LA, Breslauer KJ. Calorimetric determination of base-stacking enthalpies in double-helical DNA molecules Biopolymers - Peptide Science Section. 21: 2185-2194. PMID 7171732 DOI: 10.1002/Bip.360211107  0.596
1982 Patel DJ, Kozlowski SA, Marky LA, Rice JA, Broka C, Itakura K, Breslauer KJ. Structure and energetics of a hexanucleotide duplex with stacked trinucleotide ends formed by the sequence d(GAATTCGCG). Biochemistry. 21: 451-5. PMID 7066297 DOI: 10.1021/Bi00532A005  0.587
1982 Patel DJ, Kozlowski SA, Marky LA, Rice JA, Broka C, Itakura K, Breslauer KJ. Extra adenosine stacks into the self-complementary d(CGCAGAATTCGCG) duplex in solution. Biochemistry. 21: 445-51. PMID 7066296 DOI: 10.1021/Bi00532A004  0.544
1982 Patel DJ, Kozlowski SA, Marky LA, Rice JA, Broka C, Dallas J, Itakura K, Breslauer KJ. Structure, dynamics, and energetics of deoxyguanosine . thymidine wobble base pair formation in the self-complementary d(CGTGAATTCGCG) duplex in solution. Biochemistry. 21: 437-44. PMID 7066295 DOI: 10.1021/Bi00532A003  0.575
1982 Patel DJ, Kozlowski SA, Marky LA, Broka C, Rice JA, Itakura K, Breslauer KJ. Premelting and melting transitions in the d(CGCGAATTCGCG) self-complementary duplex in solution. Biochemistry. 21: 428-36. PMID 7066294 DOI: 10.1021/Bi00532A002  0.556
1981 Marky LA, Canuel L, Jones RA, Breslauer KJ. Calorimetric and spectroscopic investigation of the helix-to-coil transition of the self-complementary deoxyribonucleotide ATGCAT Biophysical Chemistry. 13: 141-149. PMID 7260332 DOI: 10.1016/0301-4622(81)80013-0  0.621
1981 Marky LA, Patel D, Breslauer KJ. Effect of tetramethylammonium ion on the helix-to-coil transition of poly(deoxyadenylylthymidine): A nuclear magnetic resonance and calorimetric investigation Biochemistry. 20: 1427-1431. PMID 7225341 DOI: 10.1021/Bi00509A004  0.603
1981 Freier SM, Hill KO, Dewey TG, Marky LA, Breslauer KJ, Turner DH. Solvent effects on the kinetics and thermodynamics of stacking in poly(cytidylic acid) Biochemistry. 20: 1419-1426. PMID 7225340 DOI: 10.1021/Bi00509A003  0.603
1981 Albergo DD, Marky LA, Breslauer KJ, Turner DH. Thermodynamics of (dG-dC)3 double-helix formation in water and deuterium oxide Biochemistry. 20: 1409-1413. PMID 6261793 DOI: 10.1021/Bi00509A001  0.578
1977 Breslauer KJ, Bina-Stein M. Relaxation kinetics of the helix-coil transition of a self-complementary ribo-oligonucleotide: A7U7 Biophysical Chemistry. 7: 211-216. PMID 911989 DOI: 10.1016/0301-4622(77)87024-5  0.326
1977 Breslauer KJ, Sturtevant JM. A calorimetric investigation of single stranded base stacking in the ribo-oligonucleotide A7. Biophysical Chemistry. 7: 205-9. PMID 911988 DOI: 10.1016/0301-4622(77)87023-3  0.562
1975 Breslauer KJ, Sturtevant JM, Tinoco I. Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: rA7U7. Journal of Molecular Biology. 99: 549-65. PMID 1214299 DOI: 10.1016/S0022-2836(75)80171-9  0.686
1974 Breslauer KJ, Terrin B, Sturtevant JM. Thermodynamics of transfer of molecules and groups from nonpolar to aqueous environments. I. Method. n-butyric acid at 25° Journal of Physical Chemistry. 78: 2363-2366. DOI: 10.1021/J150671A012  0.497
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