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Matthew A. Richards, Ph.D - Publications

Affiliations: 
Chemical and Biomolecular Engineering University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Madduri R, Chard K, D'Arcy M, Jung SC, Rodriguez A, Sulakhe D, Deutsch E, Funk C, Heavner B, Richards M, Shannon P, Glusman G, Price N, Kesselman C, Foster I. Correction: Reproducible big data science: A case study in continuous FAIRness. Plos One. 18: e0294883. PMID 37988378 DOI: 10.1371/journal.pone.0294883  0.384
2020 Funk CC, Casella AM, Jung S, Richards MA, Rodriguez A, Shannon P, Donovan-Maiye R, Heavner B, Chard K, Xiao Y, Glusman G, Ertekin-Taner N, Golde TE, Toga A, Hood L, et al. Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types. Cell Reports. 32: 108029. PMID 32814038 DOI: 10.1016/J.Celrep.2020.108029  0.602
2020 Madin JS, Nielsen DA, Brbic M, Corkrey R, Danko D, Edwards K, Engqvist MKM, Fierer N, Geoghegan JL, Gillings M, Kyrpides NC, Litchman E, Mason CE, Moore L, Nielsen SL, ... ... Richards MA, et al. A synthesis of bacterial and archaeal phenotypic trait data. Scientific Data. 7: 170. PMID 32503990 DOI: 10.1038/S41597-020-0497-4  0.48
2019 Madduri R, Chard K, D'Arcy M, Jung SC, Rodriguez A, Sulakhe D, Deutsch E, Funk C, Heavner B, Richards M, Shannon P, Glusman G, Price N, Kesselman C, Foster I. Reproducible big data science: A case study in continuous FAIRness. Plos One. 14: e0213013. PMID 30973881 DOI: 10.1371/Journal.Pone.0213013  0.516
2018 Readhead B, Haure-Mirande JV, Funk CC, Richards MA, Shannon P, Haroutunian V, Sano M, Liang WS, Beckmann ND, Price ND, Reiman EM, Schadt EE, Ehrlich ME, Gandy S, Dudley JT. Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. Neuron. PMID 29937276 DOI: 10.1016/J.Neuron.2018.05.023  0.522
2017 King B, Farrah T, Richards MA, Mundy M, Simeonidis E, Price ND. ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions. Bioinformatics (Oxford, England). PMID 29267848 DOI: 10.1093/Bioinformatics/Btx796  0.525
2016 Richards MA, Lie TJ, Zhang J, Ragsdale SW, Leigh JA, Price ND. Exploring Hydrogenotrophic Methanogenesis: A Genome Scale Metabolic Reconstruction of Methanococcus maripaludis. Journal of Bacteriology. PMID 27736793 DOI: 10.1128/Jb.00571-16  0.558
2016 Richards M, King B, Simeonidis E, Price N. Mighty morphing metabolic models: leveraging manual curations for automatic metabolic reconstruction of clades F1000research. 5. DOI: 10.7490/F1000Research.1112664.1  0.484
2014 Richards MA, Cassen V, Heavner BD, Ajami NE, Herrmann A, Simeonidis E, Price ND. MediaDB: a database of microbial growth conditions in defined media. Plos One. 9: e103548. PMID 25098325 DOI: 10.1371/Journal.Pone.0103548  0.542
2006 Funk CC, Richards MA, Shannon P, Donovan-Maiye R, Rappaport N, Robinson M, Allen M, Carrasquillo MM, Chakrabarty P, McFarland K, Jung SC, Rodriguez A, Ertekin-Taner N, Golde TE, Hood L, et al. O3-03-01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE Alzheimer's & Dementia. 14: P1014-P1015. DOI: 10.1016/J.Jalz.2018.06.2782  0.585
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