Year |
Citation |
Score |
2022 |
Ziv M, Gruber G, Sharon M, Vinogradov E, Yeger-Lotem E. The TissueNet v.3 Database: Protein-protein Interactions in Adult and Embryonic Human Tissue contexts. Journal of Molecular Biology. 434: 167532. PMID 35662455 DOI: 10.1016/j.jmb.2022.167532 |
0.364 |
|
2020 |
Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Coté AG, Daley M, Deimling S, Desbuleux A, ... ... Yeger-Lotem E, et al. A reference map of the human binary protein interactome. Nature. 580: 402-408. PMID 32296183 DOI: 10.1038/S41586-020-2188-X |
0.517 |
|
2020 |
Basha O, Argov CM, Artzy R, Zoabi Y, Hekselman I, Alfandari L, Chalifa-Caspi V, Yeger-Lotem E. Differential network analysis of multiple human tissue interactomes highlights tissue-selective processes and genetic disorder genes. Bioinformatics (Oxford, England). PMID 31960892 DOI: 10.1093/Bioinformatics/Btaa034 |
0.477 |
|
2020 |
Hekselman I, Yeger-Lotem E. Mechanisms of tissue and cell-type specificity in heritable traits and diseases. Nature Reviews. Genetics. PMID 31913361 DOI: 10.1038/S41576-019-0200-9 |
0.323 |
|
2019 |
Basha O, Mauer O, Simonovsky E, Shpringer R, Yeger-Lotem E. ResponseNet v.3: revealing signaling and regulatory pathways connecting your proteins and genes across human tissues. Nucleic Acids Research. PMID 31114913 DOI: 10.1093/Nar/Gkz421 |
0.451 |
|
2018 |
Iacovella MG, Bremang M, Basha O, Giacò L, Carotenuto W, Golfieri C, Szakal B, Dal Maschio M, Infantino V, Beznoussenko GV, Joseph CR, Visintin C, Mironov AA, Visintin R, Branzei D, ... ... Yeger-Lotem E, et al. Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae. Nucleic Acids Research. PMID 30011030 DOI: 10.1093/Nar/Gky618 |
0.516 |
|
2018 |
Barshir R, Hekselman I, Shemesh N, Sharon M, Novack L, Yeger-Lotem E. Role of duplicate genes in determining the tissue-selectivity of hereditary diseases. Plos Genetics. 14: e1007327. PMID 29723191 DOI: 10.1371/Journal.Pgen.1007327 |
0.318 |
|
2018 |
Perez Y, Menascu S, Cohen I, Kadir R, Basha O, Shorer Z, Romi H, Meiri G, Rabinski T, Ofir R, Yeger-Lotem E, Birk OS. RSRC1 mutation affects intellect and behaviour through aberrant splicing and transcription, downregulating IGFBP3. Brain : a Journal of Neurology. PMID 29522154 DOI: 10.1093/Brain/Awy045 |
0.364 |
|
2017 |
Basha O, Shpringer R, Argov CM, Yeger-Lotem E. The DifferentialNet database of differential protein-protein interactions in human tissues. Nucleic Acids Research. PMID 29069447 DOI: 10.1093/Nar/Gkx981 |
0.393 |
|
2017 |
Smoly IY, Lerman E, Ziv-Ukelson M, Yeger-Lotem E. MotifNet: A web-server for network motif analysis. Bioinformatics (Oxford, England). PMID 28165111 DOI: 10.1093/Bioinformatics/Btx056 |
0.416 |
|
2017 |
Smoly I, Shemesh N, Ziv-Ukelson M, Ben-Zvi A, Yeger-Lotem E. An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts. Plos Computational Biology. 13: e1005221. PMID 28135269 DOI: 10.1371/Journal.Pcbi.1005221 |
0.352 |
|
2016 |
Bar-Lavan Y, Shemesh N, Dror S, Ofir R, Yeger-Lotem E, Ben-Zvi A. A Differentiation Transcription Factor Establishes Muscle-Specific Proteostasis in Caenorhabditis elegans. Plos Genetics. 12: e1006531. PMID 28036392 DOI: 10.1371/Journal.Pgen.1006531 |
0.382 |
|
2016 |
Basha O, Barshir R, Sharon M, Lerman E, Kirson BF, Hekselman I, Yeger-Lotem E. The TissueNet v.2 database: A quantitative view of protein-protein interactions across human tissues. Nucleic Acids Research. PMID 27899616 DOI: 10.1093/Nar/Gkw1088 |
0.426 |
|
2016 |
Smoly I, Carmel A, Shemer-Avni Y, Yeger-Lotem E, Ziv-Ukelson M. Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-viral Infection Patterns. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 23: 165-79. PMID 26953875 DOI: 10.1089/Cmb.2015.0168 |
0.378 |
|
2015 |
Yeger-Lotem E, Sharan R. Human protein interaction networks across tissues and diseases. Frontiers in Genetics. 6: 257. PMID 26347769 DOI: 10.3389/Fgene.2015.00257 |
0.516 |
|
2015 |
Basha O, Flom D, Barshir R, Smoly I, Tirman S, Yeger-Lotem E. MyProteinNet: build up-to-date protein interaction networks for organisms, tissues and user-defined contexts. Nucleic Acids Research. 43: W258-63. PMID 25990735 DOI: 10.1093/Nar/Gkv515 |
0.53 |
|
2015 |
Ransbotyn V, Yeger-Lotem E, Basha O, Acuna T, Verduyn C, Gordon M, Chalifa-Caspi V, Hannah MA, Barak S. A combination of gene expression ranking and co-expression network analysis increases discovery rate in large-scale mutant screens for novel Arabidopsis thaliana abiotic stress genes. Plant Biotechnology Journal. 13: 501-13. PMID 25370817 DOI: 10.1111/Pbi.12274 |
0.368 |
|
2014 |
Barshir R, Shwartz O, Smoly IY, Yeger-Lotem E. Comparative analysis of human tissue interactomes reveals factors leading to tissue-specific manifestation of hereditary diseases. Plos Computational Biology. 10: e1003632. PMID 24921629 DOI: 10.1371/Journal.Pcbi.1003632 |
0.407 |
|
2013 |
Lan A, Ziv-Ukelson M, Yeger-Lotem E. A context-sensitive framework for the analysis of human signalling pathways in molecular interaction networks. Bioinformatics (Oxford, England). 29: i210-6. PMID 23812986 DOI: 10.1093/Bioinformatics/Btt240 |
0.503 |
|
2013 |
Basha O, Tirman S, Eluk A, Yeger-Lotem E. ResponseNet2.0: Revealing signaling and regulatory pathways connecting your proteins and genes--now with human data. Nucleic Acids Research. 41: W198-203. PMID 23761447 DOI: 10.1093/Nar/Gkt532 |
0.45 |
|
2013 |
Barshir R, Basha O, Eluk A, Smoly IY, Lan A, Yeger-Lotem E. The TissueNet database of human tissue protein-protein interactions. Nucleic Acids Research. 41: D841-4. PMID 23193266 DOI: 10.1093/Nar/Gks1198 |
0.421 |
|
2011 |
Lan A, Smoly IY, Rapaport G, Lindquist S, Fraenkel E, Yeger-Lotem E. ResponseNet: Revealing signaling and regulatory networks linking genetic and transcriptomic screening data Nucleic Acids Research. 39: W424-W429. PMID 21576238 DOI: 10.1093/Nar/Gkr359 |
0.478 |
|
2009 |
Yeger-Lotem E, Riva L, Su LJ, Gitler AD, Cashikar AG, King OD, Auluck PK, Geddie ML, Valastyan JS, Karger DR, Lindquist S, Fraenkel E. Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity. Nature Genetics. 41: 316-23. PMID 19234470 DOI: 10.1038/Ng.337 |
0.359 |
|
2005 |
Pinter RY, Rokhlenko O, Yeger-Lotem E, Ziv-Ukelson M. Alignment of metabolic pathways. Bioinformatics (Oxford, England). 21: 3401-8. PMID 15985496 DOI: 10.1093/Bioinformatics/Bti554 |
0.591 |
|
2005 |
Hershberg R, Yeger-Lotem E, Margalit H. Chromosomal organization is shaped by the transcription regulatory network. Trends in Genetics : Tig. 21: 138-42. PMID 15734572 DOI: 10.1016/J.Tig.2005.01.003 |
0.576 |
|
2004 |
Yeger-Lotem E, Sattath S, Kashtan N, Itzkovitz S, Milo R, Pinter RY, Alon U, Margalit H. Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 101: 5934-9. PMID 15079056 DOI: 10.1073/Pnas.0306752101 |
0.642 |
|
2003 |
Yeger-Lotem E, Margalit H. Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation. Nucleic Acids Research. 31: 6053-61. PMID 14530453 DOI: 10.1093/Nar/Gkg787 |
0.636 |
|
Low-probability matches (unlikely to be authored by this person) |
2021 |
Shemesh N, Jubran J, Dror S, Simonovsky E, Basha O, Argov C, Hekselman I, Abu-Qarn M, Vinogradov E, Mauer O, Tiago T, Carra S, Ben-Zvi A, Yeger-Lotem E. The landscape of molecular chaperones across human tissues reveals a layered architecture of core and variable chaperones. Nature Communications. 12: 2180. PMID 33846299 DOI: 10.1038/s41467-021-22369-9 |
0.292 |
|
2014 |
Ostrow SL, Barshir R, DeGregori J, Yeger-Lotem E, Hershberg R. Cancer evolution is associated with pervasive positive selection on globally expressed genes. Plos Genetics. 10: e1004239. PMID 24603726 DOI: 10.1371/Journal.Pgen.1004239 |
0.289 |
|
2019 |
Simonovsky E, Schuster R, Yeger-Lotem E. Large-scale analysis of human gene expression variability associates highly variable drug targets with lower drug effectiveness and safety. Bioinformatics (Oxford, England). PMID 30649201 DOI: 10.1093/Bioinformatics/Btz023 |
0.244 |
|
2010 |
Su LJ, Auluck PK, Outeiro TF, Yeger-Lotem E, Kritzer JA, Tardiff DF, Strathearn KE, Liu F, Cao S, Hamamichi S, Hill KJ, Caldwell KA, Bell GW, Fraenkel E, Cooper AA, et al. Compounds from an unbiased chemical screen reverse both ER-to-Golgi trafficking defects and mitochondrial dysfunction in Parkinson's disease models. Disease Models & Mechanisms. 3: 194-208. PMID 20038714 DOI: 10.1242/Dmm.004267 |
0.231 |
|
2019 |
Elyahu Y, Hekselman I, Eizenberg-Magar I, Berner O, Strominger I, Schiller M, Mittal K, Nemirovsky A, Eremenko E, Vital A, Simonovsky E, Chalifa-Caspi V, Friedman N, Yeger-Lotem E, Monsonego A. Aging promotes reorganization of the CD4 T cell landscape toward extreme regulatory and effector phenotypes. Science Advances. 5: eaaw8330. PMID 31457092 DOI: 10.1126/Sciadv.Aaw8330 |
0.213 |
|
2023 |
Simonovsky E, Sharon M, Ziv M, Mauer O, Hekselman I, Jubran J, Vinogradov E, Argov CM, Basha O, Kerber L, Yogev Y, Segrè AV, Im HK, Birk O, Rokach L, ... Yeger-Lotem E, et al. Predicting molecular mechanisms of hereditary diseases by using their tissue-selective manifestation. Molecular Systems Biology. e11407. PMID 37232043 DOI: 10.15252/msb.202211407 |
0.205 |
|
2020 |
Jubran J, Hekselman I, Novack L, Yeger-Lotem E. Dosage-sensitive molecular mechanisms are associated with the tissue-specificity of traits and diseases. Computational and Structural Biotechnology Journal. 18: 4024-4032. PMID 33363699 DOI: 10.1016/j.csbj.2020.10.030 |
0.2 |
|
2023 |
Sharon M, Gruber G, Argov CM, Volozhinsky M, Yeger-Lotem E. ProAct: quantifying the differential activity of biological processes in tissues, cells, and user-defined contexts. Nucleic Acids Research. PMID 37207335 DOI: 10.1093/nar/gkad421 |
0.198 |
|
2021 |
Tiago T, Hummel B, Morelli FF, Basile V, Vinet J, Galli V, Mediani L, Antoniani F, Pomella S, Cassandri M, Garone MG, Silvestri B, Cimino M, Cenacchi G, Costa R, ... ... Yeger-Lotem E, et al. Small heat-shock protein HSPB3 promotes myogenesis by regulating the lamin B receptor. Cell Death & Disease. 12: 452. PMID 33958580 DOI: 10.1038/s41419-021-03737-1 |
0.178 |
|
2022 |
Sharon M, Vinogradov E, Argov CM, Lazarescu O, Zoabi Y, Hekselman I, Yeger-Lotem E. The differential activity of biological processes in tissues and cell subsets can illuminate disease-related processes and cell type identities. Bioinformatics (Oxford, England). PMID 35015838 DOI: 10.1093/bioinformatics/btab883 |
0.177 |
|
2022 |
Hekselman I, Kerber L, Ziv M, Gruber G, Yeger-Lotem E. The Organ-Disease Annotations (ODiseA) Database of Hereditary Diseases and Inflicted Tissues. Journal of Molecular Biology. 167619. PMID 35504357 DOI: 10.1016/j.jmb.2022.167619 |
0.17 |
|
2023 |
Cain A, Taga M, McCabe C, Green GS, Hekselman I, White CC, Lee DI, Gaur P, Rozenblatt-Rosen O, Zhang F, Yeger-Lotem E, Bennett DA, Yang HS, Regev A, Menon V, et al. Multicellular communities are perturbed in the aging human brain and Alzheimer's disease. Nature Neuroscience. PMID 37336975 DOI: 10.1038/s41593-023-01356-x |
0.144 |
|
2021 |
Jayaram DR, Frost S, Argov C, Liju VB, Anto NP, Muraleedharan A, Ben-Ari A, Sinay R, Smoly I, Novoplansky O, Isakov N, Toiber D, Keasar C, Elkabets M, Yeger-Lotem E, et al. Unraveling the hidden role of a uORF-encoded peptide as a kinase inhibitor of PKCs. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34593629 DOI: 10.1073/pnas.2018899118 |
0.142 |
|
Hide low-probability matches. |