Calvin Yip - Publications

Affiliations: 
University of British Columbia, Vancouver, Vancouver, BC, Canada 
Website:
http://www.biochem.ubc.ca/faculty/calvin-yip/

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Vasyliuk D, Felt J, Zhong ED, Berger B, Davis JH, Yip CK. Conformational landscape of the yeast SAGA complex as revealed by cryo-EM. Scientific Reports. 12: 12306. PMID 35853968 DOI: 10.1038/s41598-022-16391-0  0.313
2021 Harris NJ, Jenkins ML, Dalwadi U, Fleming KD, Nam SE, Parsons MAH, Yip CK, Burke JE. Biochemical insight into novel Rab-GEF activity of the mammalian TRAPPIII complex. Journal of Molecular Biology. 167145. PMID 34229011 DOI: 10.1016/j.jmb.2021.167145  0.332
2020 Jenkins ML, Harris NJ, Dalwadi U, Fleming KD, Ziemianowicz DS, Rafiei A, Martin EM, Schriemer DC, Yip CK, Burke JE. The substrate specificity of the human TRAPPII complex's Rab-guanine nucleotide exchange factor activity. Communications Biology. 3: 735. PMID 33277614 DOI: 10.1038/s42003-020-01459-2  0.34
2018 Setiaputra D, Ahmad S, Dalwadi U, Steunou AL, Lu S, Ross JD, Dong MQ, Côté J, Yip CK. Molecular architecture of the essential yeast histone acetyltransferase complex NuA4 redefines its multi-modularity. Molecular and Cellular Biology. PMID 29463645 DOI: 10.1128/Mcb.00570-17  0.306
2018 Dalwadi U, Yip CK. Structural insights into the function of Elongator. Cellular and Molecular Life Sciences : Cmls. PMID 29332244 DOI: 10.1007/s00018-018-2747-6  0.335
2017 Nanji T, Liu X, Chew LH, Li FK, Biswas M, Yu ZQ, Lu S, Dong MQ, Du LL, Klionsky DJ, Yip CK. Conserved and unique features of the fission yeast core Atg1 complex. Autophagy. 0. PMID 28976798 DOI: 10.1080/15548627.2017.1382782  0.337
2017 Setiaputra DT, Yip CK. Characterizing the molecular architectures of chromatin-modifying complexes. Biochimica Et Biophysica Acta. PMID 28652207 DOI: 10.1016/j.bbapap.2017.06.018  0.308
2016 Setiaputra DT, Cheng DT, Lu S, Hansen JM, Dalwadi U, Lam CH, To JL, Dong MQ, Yip CK. Molecular architecture of the yeast Elongator complex reveals an unexpected asymmetric subunit arrangement. Embo Reports. PMID 27872205 DOI: 10.15252/Embr.201642548  0.353
2016 Ha JY, Chou HT, Ungar D, Yip CK, Walz T, Hughson FM. Molecular architecture of the complete COG tethering complex. Nature Structural & Molecular Biology. PMID 27428773 DOI: 10.1038/Nsmb.3263  0.539
2015 Chew LH, Lu S, Liu X, Li FK, Yu AY, Klionsky DJ, Dong MQ, Yip CK. Molecular interactions of the Saccharomyces cerevisiae Atg1 complex provide insights into assembly and regulatory mechanisms. Autophagy. 11: 891-905. PMID 25998554 DOI: 10.1080/15548627.2015.1040972  0.342
2015 Setiaputra D, Ross JD, Lu S, Cheng DT, Dong MQ, Yip CK. Conformational flexibility and subunit arrangement of the modular yeast Spt-Ada-Gcn5 acetyltransferase complex. The Journal of Biological Chemistry. 290: 10057-70. PMID 25713136 DOI: 10.1074/jbc.M114.624684  0.341
2015 Solomonson M, Setiaputra D, Makepeace KA, Lameignere E, Petrotchenko EV, Conrady DG, Bergeron JR, Vuckovic M, DiMaio F, Borchers CH, Yip CK, Strynadka NC. Structure of EspB from the ESX-1 type VII secretion system and insights into its export mechanism. Structure (London, England : 1993). 23: 571-83. PMID 25684576 DOI: 10.1016/J.Str.2015.01.002  0.582
2013 Mao K, Chew LH, Yip CK, Klionsky DJ. The role of Atg29 phosphorylation in PAS assembly. Autophagy. 9: 2178-9. PMID 24141181 DOI: 10.4161/Auto.26740  0.357
2013 Chew LH, Setiaputra D, Klionsky DJ, Yip CK. Structural characterization of the Saccharomyces cerevisiae autophagy regulatory complex Atg17-Atg31-Atg29. Autophagy. 9: 1467-74. PMID 23939028 DOI: 10.4161/Auto.25687  0.381
2013 Mao K, Chew LH, Inoue-Aono Y, Cheong H, Nair U, Popelka H, Yip CK, Klionsky DJ. Atg29 phosphorylation regulates coordination of the Atg17-Atg31-Atg29 complex with the Atg11 scaffold during autophagy initiation. Proceedings of the National Academy of Sciences of the United States of America. 110: E2875-84. PMID 23858448 DOI: 10.1073/Pnas.1300064110  0.322
2013 Chambers MG, Pyburn TM, González-Rivera C, Collier SE, Eli I, Yip CK, Takizawa Y, Lacy DB, Cover TL, Ohi MD. Structural analysis of the oligomeric states of Helicobacter pylori VacA toxin. Journal of Molecular Biology. 425: 524-35. PMID 23178866 DOI: 10.1016/J.Jmb.2012.11.020  0.304
2011 Knodler LA, Ibarra JA, Pérez-Rueda E, Yip CK, Steele-Mortimer O. Coiled-coil domains enhance the membrane association of Salmonella type III effectors. Cellular Microbiology. 13: 1497-517. PMID 21679290 DOI: 10.1111/j.1462-5822.2011.01635.x  0.301
2011 Yip CK, Walz T. Molecular structure and flexibility of the yeast coatomer as revealed by electron microscopy. Journal of Molecular Biology. 408: 825-31. PMID 21435344 DOI: 10.1016/J.Jmb.2011.03.029  0.598
2010 Yip CK, Berscheminski J, Walz T. Molecular architecture of the TRAPPII complex and implications for vesicle tethering. Nature Structural & Molecular Biology. 17: 1298-304. PMID 20972447 DOI: 10.1038/Nsmb.1914  0.578
2010 Lees JA, Yip CK, Walz T, Hughson FM. Molecular organization of the COG vesicle tethering complex. Nature Structural & Molecular Biology. 17: 1292-7. PMID 20972446 DOI: 10.1038/Nsmb.1917  0.578
2010 Corbett KD, Yip CK, Ee LS, Walz T, Amon A, Harrison SC. The monopolin complex crosslinks kinetochore components to regulate chromosome-microtubule attachments. Cell. 142: 556-67. PMID 20723757 DOI: 10.1016/J.Cell.2010.07.017  0.569
2010 Yip CK, Murata K, Walz T, Sabatini DM, Kang SA. Structure of the human mTOR complex I and its implications for rapamycin inhibition. Molecular Cell. 38: 768-74. PMID 20542007 DOI: 10.1016/J.Molcel.2010.05.017  0.558
2009 Ren Y, Yip CK, Tripathi A, Huie D, Jeffrey PD, Walz T, Hughson FM. A structure-based mechanism for vesicle capture by the multisubunit tethering complex Dsl1. Cell. 139: 1119-29. PMID 20005805 DOI: 10.1016/J.Cell.2009.11.002  0.575
2009 Spreter T, Yip CK, Sanowar S, André I, Kimbrough TG, Vuckovic M, Pfuetzner RA, Deng W, Yu AC, Finlay BB, Baker D, Miller SI, Strynadka NC. A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system. Nature Structural & Molecular Biology. 16: 468-76. PMID 19396170 DOI: 10.1038/Nsmb.1603  0.538
2009 Li H, Motamedi MR, Yip CK, Wang Z, Walz T, Patel DJ, Moazed D. An alpha motif at Tas3 C terminus mediates RITS cis spreading and promotes heterochromatic gene silencing. Molecular Cell. 34: 155-67. PMID 19394293 DOI: 10.1016/J.Molcel.2009.02.032  0.501
2008 Wu W, Sinha D, Shikov S, Yip CK, Walz T, Billings PC, Lear JD, Walsh PN. Factor XI homodimer structure is essential for normal proteolytic activation by factor XIIa, thrombin, and factor XIa. The Journal of Biological Chemistry. 283: 18655-64. PMID 18441012 DOI: 10.1074/Jbc.M802275200  0.52
2007 Ohi MD, Feoktistova A, Ren L, Yip C, Cheng Y, Chen JS, Yoon HJ, Wall JS, Huang Z, Penczek PA, Gould KL, Walz T. Structural organization of the anaphase-promoting complex bound to the mitotic activator Slp1. Molecular Cell. 28: 871-85. PMID 18082611 DOI: 10.1016/J.Molcel.2007.10.003  0.636
2006 Knodler LA, Bertero M, Yip C, Strynadka NC, Steele-Mortimer O. Structure-based mutagenesis of SigE verifies the importance of hydrophobic and electrostatic residues in type III chaperone function. Molecular Microbiology. 62: 928-40. PMID 17038123 DOI: 10.1111/J.1365-2958.2006.05418.X  0.553
2006 Wang YA, Yu X, Yip C, Strynadka NC, Egelman EH. Structural polymorphism in bacterial EspA filaments revealed by cryo-EM and an improved approach to helical reconstruction. Structure (London, England : 1993). 14: 1189-96. PMID 16843900 DOI: 10.1016/J.Str.2006.05.018  0.539
2006 Yip CK, Strynadka NC. New structural insights into the bacterial type III secretion system. Trends in Biochemical Sciences. 31: 223-30. PMID 16537106 DOI: 10.1016/j.tibs.2006.02.005  0.594
2005 Thomas NA, Deng W, Puente JL, Frey EA, Yip CK, Strynadka NC, Finlay BB. CesT is a multi-effector chaperone and recruitment factor required for the efficient type III secretion of both LEE- and non-LEE-encoded effectors of enteropathogenic Escherichia coli. Molecular Microbiology. 57: 1762-79. PMID 16135239 DOI: 10.1111/j.1365-2958.2005.04802.x  0.554
2005 Yip CK, Kimbrough TG, Felise HB, Vuckovic M, Thomas NA, Pfuetzner RA, Frey EA, Finlay BB, Miller SI, Strynadka NC. Structural characterization of the molecular platform for type III secretion system assembly. Nature. 435: 702-7. PMID 15931226 DOI: 10.1038/Nature03554  0.599
2005 Yip CK, Finlay BB, Strynadka NC. Structural characterization of a type III secretion system filament protein in complex with its chaperone. Nature Structural & Molecular Biology. 12: 75-81. PMID 15619638 DOI: 10.1038/nsmb879  0.61
2002 Knodler LA, Celli J, Hardt WD, Vallance BA, Yip C, Finlay BB. Salmonella effectors within a single pathogenicity island are differentially expressed and translocated by separate type III secretion systems. Molecular Microbiology. 43: 1089-103. PMID 11918798 DOI: 10.1046/J.1365-2958.2002.02820.X  0.351
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