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Federico Baldini - Publications

Affiliations: 
2015- Luxembourg Centre for Systems Biomedicine University of Luxembourg 
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8 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Meydan Y, Baldini F, Korem T. pymgpipe: microbiome metabolic modeling in Python. Journal of Open Source Software. 8. PMID 37885608 DOI: 10.21105/joss.05545  0.396
2023 Solfisburg QS, Baldini F, Baldwin-Hunter BL, Lee HH, Park H, Freedberg DE, Lightdale CJ, Korem T, Abrams JA. The Salivary Microbiome and Predicted Metabolite Production are Associated with Progression from Barrett's Esophagus to Esophageal Adenocarcinoma. Biorxiv : the Preprint Server For Biology. PMID 37425673 DOI: 10.1101/2023.06.27.546733  0.322
2023 Kindschuh WF, Baldini F, Liu MC, Liao J, Meydan Y, Lee HH, Heinken A, Thiele I, Thaiss CA, Levy M, Korem T. Preterm birth is associated with xenobiotics and predicted by the vaginal metabolome. Nature Microbiology. PMID 36635575 DOI: 10.1038/s41564-022-01293-8  0.659
2020 Baldini F, Hertel J, Sandt E, Thinnes CC, Neuberger-Castillo L, Pavelka L, Betsou F, Krüger R, Thiele I. Parkinson's disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions. Bmc Biology. 18: 62. PMID 32517799 DOI: 10.1186/S12915-020-00775-7  0.568
2019 Hertel J, Harms AC, Heinken A, Baldini F, Thinnes CC, Glaab E, Vasco DA, Pietzner M, Stewart ID, Wareham NJ, Langenberg C, Trenkwalder C, Krüger R, Hankemeier T, Fleming RMT, et al. Integrated Analyses of Microbiome and Longitudinal Metabolome Data Reveal Microbial-Host Interactions on Sulfur Metabolism in Parkinson's Disease. Cell Reports. 29: 1767-1777.e8. PMID 31722195 DOI: 10.1016/J.Celrep.2019.10.035  0.685
2019 Heinken A, Ravcheev DA, Baldini F, Heirendt L, Fleming RMT, Thiele I. Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease. Microbiome. 7: 75. PMID 31092280 DOI: 10.1186/S40168-019-0689-3  0.705
2018 Baldini F, Heinken A, Heirendt L, Magnusdottir S, Fleming RMT, Thiele I. The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities. Bioinformatics (Oxford, England). PMID 30462168 DOI: 10.1093/Bioinformatics/Bty941  0.596
2017 Bauer E, Zimmermann J, Baldini F, Thiele I, Kaleta C. BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities. Plos Computational Biology. 13: e1005544. PMID 28531184 DOI: 10.1371/Journal.Pcbi.1005544  0.704
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