| Year |
Citation |
Score |
| 2024 |
Mardoc E, Sow MD, Déjean S, Salse J. Genomic data integration tutorial, a plant case study. Bmc Genomics. 25: 66. PMID 38233804 DOI: 10.1186/s12864-023-09833-0 |
0.49 |
|
| 2023 |
Goumy C, Guy Ouedraogo Z, Soler G, Eymard-Pierre E, Laurichesse H, Delabaere A, Gallot D, Bouchet P, Perthus I, Pebrel-Richard C, Gouas L, Salaun G, Salse J, Véronèse L, Tchirkov A. Optical genome mapping for prenatal diagnosis: A prospective study. Clinica Chimica Acta; International Journal of Clinical Chemistry. 551: 117594. PMID 37832906 DOI: 10.1016/j.cca.2023.117594 |
0.334 |
|
| 2023 |
Banouh M, Armisen D, Bouguennec A, Huneau C, Sow MD, Pont C, Salse J, Civáň P. Low impact of polyploidization on the transcriptome of synthetic allohexaploid wheat. Bmc Genomics. 24: 255. PMID 37170217 DOI: 10.1186/s12864-023-09324-2 |
0.531 |
|
| 2023 |
Flores R, Huneau C, Burlot L, Lainé M, Kimmel E, Pommier C, Alaux M, Adam-Blondon AF, Pont C, Quesneville H, Salse J. SyntenyViewer: a comparative genomics-driven translational research tool. Database : the Journal of Biological Databases and Curation. 2023. PMID 37159239 DOI: 10.1093/database/baad027 |
0.57 |
|
| 2023 |
Bellec A, Dia Sow M, Pont C, Civan P, Mardoc E, Duchemin W, Armisen D, Huneau C, Thévenin J, Vernoud V, Depège-Fargeix N, Maunas L, Escale B, Dubreucq B, Rogowsky P, ... ... Salse J, et al. Tracing 100 million years of grass genome evolutionary plasticity. The Plant Journal : For Cell and Molecular Biology. PMID 36919199 DOI: 10.1111/tpj.16185 |
0.553 |
|
| 2023 |
Salse J. Translational research from models to crops: comparative genomics for plant breeding. Comptes Rendus Biologies. 345: 111-128. PMID 36847121 DOI: 10.5802/crbiol.103 |
0.37 |
|
| 2022 |
Shi T, Huneau C, Zhang Y, Li Y, Chen J, Salse J, Wang Q. The slow-evolving Acorus tatarinowii genome sheds light on ancestral monocot evolution. Nature Plants. PMID 35835857 DOI: 10.1038/s41477-022-01187-x |
0.622 |
|
| 2022 |
Mishra B, Ulaszewski B, Meger J, Aury JM, Bodénès C, Lesur-Kupin I, Pfenninger M, Da Silva C, Gupta DK, Guichoux E, Heer K, Lalanne C, Labadie K, Opgenoorth L, Ploch S, ... ... Salse J, et al. A Chromosome-Level Genome Assembly of the European Beech () Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs. Frontiers in Genetics. 12: 691058. PMID 35211148 DOI: 10.3389/fgene.2021.691058 |
0.579 |
|
| 2021 |
Pichot C, Djari A, Tran J, Verdenaud M, Marande W, Huneau C, Gautier V, Latrasse D, Arribat S, Sommard V, Troadec C, Poncet C, Bendahmane M, Szecsi J, Dogimont C, ... Salse J, et al. Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype. Iscience. 25: 103696. PMID 35059606 DOI: 10.1016/j.isci.2021.103696 |
0.609 |
|
| 2021 |
Groppi A, Liu S, Cornille A, Decroocq S, Bui QT, Tricon D, Cruaud C, Arribat S, Belser C, Marande W, Salse J, Huneau C, Rodde N, Rhalloussi W, Cauet S, et al. Population genomics of apricots unravels domestication history and adaptive events. Nature Communications. 12: 3956. PMID 34172741 DOI: 10.1038/s41467-021-24283-6 |
0.509 |
|
| 2020 |
Lovegrove A, Wingen LU, Plummer A, Wood A, Passmore D, Kosik O, Freeman J, Mitchell RAC, Hassall K, Ulker M, Tremmel-Bede K, Rakszegi M, Bedő Z, Perretant MR, Charmet G, ... ... Salse J, et al. Identification of a major QTL and associated molecular marker for high arabinoxylan fibre in white wheat flour. Plos One. 15: e0227826. PMID 32023285 DOI: 10.1371/Journal.Pone.0227826 |
0.382 |
|
| 2020 |
Hufnagel B, Marques A, Soriano A, Marquès L, Divol F, Doumas P, Sallet E, Mancinotti D, Carrere S, Marande W, Arribat S, Keller J, Huneau C, Blein T, Aimé D, ... ... Salse J, et al. High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. Nature Communications. 11: 492. PMID 31980615 DOI: 10.1038/S41467-019-14197-9 |
0.467 |
|
| 2019 |
Kreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, ... ... Salse J, et al. A reference genome for pea provides insight into legume genome evolution. Nature Genetics. 51: 1411-1422. PMID 31477930 DOI: 10.1038/S41588-019-0480-1 |
0.686 |
|
| 2019 |
Pont C, Leroy T, Seidel M, Tondelli A, Duchemin W, Armisen D, Lang D, Bustos-Korts D, Goué N, Balfourier F, Molnár-Láng M, Lage J, Kilian B, Özkan H, Waite D, ... ... Salse J, et al. Tracing the ancestry of modern bread wheats. Nature Genetics. 51: 905-911. PMID 31043760 DOI: 10.1038/S41588-019-0393-Z |
0.45 |
|
| 2019 |
Pont C, Wagner S, Kremer A, Orlando L, Plomion C, Salse J. Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA. Genome Biology. 20: 29. PMID 30744646 DOI: 10.1186/s13059-019-1627-1 |
0.513 |
|
| 2019 |
Pont C, Wagner S, Kremer A, Orlando L, Plomion C, Salse J. Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA. Genome Biology. 20: 29. PMID 30744646 DOI: 10.1186/S13059-019-1627-1 |
0.592 |
|
| 2018 |
Alaux M, Rogers J, Letellier T, Flores R, Alfama F, Pommier C, Mohellibi N, Durand S, Kimmel E, Michotey C, Guerche C, Loaec M, Lainé M, Steinbach D, Choulet F, ... ... Salse J, et al. Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biology. 19: 111. PMID 30115101 DOI: 10.1186/S13059-018-1491-4 |
0.648 |
|
| 2018 |
Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, ... ... Salse J, et al. Oak genome reveals facets of long lifespan. Nature Plants. PMID 29915331 DOI: 10.1038/S41477-018-0172-3 |
0.776 |
|
| 2018 |
Raymond O, Gouzy J, Just J, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrère S, Caissard JC, Couloux A, Cottret L, Aury JM, ... ... Salse J, et al. The Rosa genome provides new insights into the domestication of modern roses. Nature Genetics. PMID 29713014 DOI: 10.1038/S41588-018-0110-3 |
0.646 |
|
| 2018 |
Gui S, Peng J, Wang X, Wu Z, Cao R, Salse J, Zhang H, Zhu Z, Xia Q, Quan Z, Shu L, Ke W, Ding Y. Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements. The Plant Journal : For Cell and Molecular Biology. PMID 29575237 DOI: 10.1111/Tpj.13894 |
0.552 |
|
| 2017 |
Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, ... ... Salse J, et al. The P. patens chromosome-scale assembly reveals moss genome structure and evolution. The Plant Journal : For Cell and Molecular Biology. PMID 29237241 DOI: 10.1111/Tpj.13801 |
0.826 |
|
| 2017 |
Quraishi UM, Pont C, Ain QU, Flores R, Burlot L, Alaux M, Quesneville H, Salse J. Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.). Frontiers in Plant Science. 8: 1843. PMID 29184557 DOI: 10.3389/Fpls.2017.01843 |
0.8 |
|
| 2017 |
Wu S, Shamimuzzaman M, Sun H, Salse J, Sui X, Wilder A, Wu Z, Levi A, Xu Y, Ling KS, Fei Z. The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ringspot virus resistance locus. The Plant Journal : For Cell and Molecular Biology. PMID 28940759 DOI: 10.1111/Tpj.13722 |
0.686 |
|
| 2017 |
Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, ... ... Salse J, et al. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature. 546: 148-152. PMID 28538728 DOI: 10.1038/Nature22380 |
0.79 |
|
| 2017 |
Murat F, Armero A, Pont C, Klopp C, Salse J. Reconstructing the genome of the most recent common ancestor of flowering plants. Nature Genetics. PMID 28288112 DOI: 10.1038/Ng.3813 |
0.804 |
|
| 2017 |
Pont C, Salse J. Wheat paleohistory created asymmetrical genomic evolution. Current Opinion in Plant Biology. 36: 29-37. PMID 28182971 DOI: 10.1016/J.Pbi.2017.01.001 |
0.565 |
|
| 2016 |
El Baidouri M, Murat F, Veyssiere M, Molinier M, Flores R, Burlot L, Alaux M, Quesneville H, Pont C, Salse J. Reconciling the evolutionary origin of bread wheat (Triticum aestivum). The New Phytologist. PMID 27551821 DOI: 10.1111/Nph.14113 |
0.759 |
|
| 2016 |
Salse J. Deciphering the evolutionary interplay between subgenomes following polyploidy: A paleogenomics approach in grasses. American Journal of Botany. 103: 1167-74. PMID 27425631 DOI: 10.3732/Ajb.1500459 |
0.619 |
|
| 2016 |
Murat F, Louis A, Maumus F, Armero A, Cook R, Quesneville H, Crollius HR, Salse J. Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology. 17: 64. PMID 27044591 DOI: 10.1186/S13059-016-0887-2 |
0.67 |
|
| 2016 |
Salse J. Ancestors of modern plant crops. Current Opinion in Plant Biology. 30: 134-42. PMID 26985732 DOI: 10.1016/J.Pbi.2016.02.005 |
0.603 |
|
| 2016 |
Dobrovolskaya OB, Pont C, Orlov YL, Salse J. Development of new SSR markers for homoeologous WFZP gene loci based on the study of the structure and location of microsatellites in gene-rich regions of chromosomes 2AS, 2BS, and 2DS in bread wheat Russian Journal of Genetics: Applied Research. 6: 330-337. DOI: 10.1134/S2079059716030023 |
0.598 |
|
| 2015 |
Murat F, Louis A, Maumus F, Armero A, Cooke R, Quesneville H, Crollius HR, Salse J. Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology. 16: 262. PMID 26653025 DOI: 10.1186/S13059-015-0814-Y |
0.816 |
|
| 2015 |
de Miguel M, Bartholomé J, Ehrenmann F, Murat F, Moriguchi Y, Uchiyama K, Ueno S, Tsumura Y, Lagraulet H, de Maria N, Cabezas JA, Cervera MT, Gion JM, Salse J, Plomion C. Evidence of intense chromosomal shuffling during conifer evolution. Genome Biology and Evolution. PMID 26400405 DOI: 10.1093/Gbe/Evv185 |
0.793 |
|
| 2015 |
Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, ... ... Salse J, et al. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources. PMID 25944057 DOI: 10.1111/1755-0998.12425 |
0.792 |
|
| 2015 |
Lesur I, Le Provost G, Bento P, Da Silva C, Leplé JC, Murat F, Ueno S, Bartholomé J, Lalanne C, Ehrenmann F, Noirot C, Burban C, Léger V, Amselem J, Belser C, ... ... Salse J, et al. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. Bmc Genomics. 16: 112. PMID 25765701 DOI: 10.1186/S12864-015-1331-9 |
0.808 |
|
| 2015 |
Murat F, Zhang R, Guizard S, Gavranovi? H, Flores R, Steinbach D, Quesneville H, Tannier E, Salse J. Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops. Genome Biology and Evolution. 7: 735-49. PMID 25637221 DOI: 10.1093/Gbe/Evv014 |
0.82 |
|
| 2015 |
Louis A, Murat F, Salse J, Crollius HR. GenomicusPlants: a web resource to study genome evolution in flowering plants. Plant & Cell Physiology. 56: e4. PMID 25432975 DOI: 10.1093/Pcp/Pcu177 |
0.822 |
|
| 2015 |
Dobrovolskaya O, Pont C, Sibout R, Martinek P, Badaeva E, Murat F, Chosson A, Watanabe N, Prat E, Gautier N, Gautier V, Poncet C, Orlov YL, Krasnikov AA, Bergès H, ... ... Salse J, et al. FRIZZY PANICLE drives supernumerary spikelets in bread wheat. Plant Physiology. 167: 189-99. PMID 25398545 DOI: 10.1104/Pp.114.250043 |
0.67 |
|
| 2015 |
Dimitrov A, Krachunov M, Kulev O, Salse J, Avdjieva I, Vassilev D. Towards SNP calling in polyploid genomes Embnet.Journal. 21: 826. DOI: 10.14806/Ej.21.A.826 |
0.482 |
|
| 2014 |
Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, ... ... Salse J, et al. The genome of Eucalyptus grandis. Nature. 510: 356-62. PMID 24919147 DOI: 10.1038/Nature13308 |
0.808 |
|
| 2014 |
Valluru R, Reynolds MP, Salse J. Genetic and molecular bases of yield-associated traits: a translational biology approach between rice and wheat. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 127: 1463-89. PMID 24913362 DOI: 10.1007/S00122-014-2332-9 |
0.445 |
|
| 2014 |
Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 32: 656-62. PMID 24908277 DOI: 10.1038/Nbt.2906 |
0.767 |
|
| 2014 |
Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L, Mastrangelo AM, Whan A, Stephen S, Barker G, Wieseke R, ... ... Salse J, et al. Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnology Journal. 12: 787-96. PMID 24646323 DOI: 10.1111/Pbi.12183 |
0.426 |
|
| 2014 |
Zhang R, Murat F, Pont C, Langin T, Salse J. Paleo-evolutionary plasticity of plant disease resistance genes. Bmc Genomics. 15: 187. PMID 24617999 DOI: 10.1186/1471-2164-15-187 |
0.741 |
|
| 2014 |
Murat F, Zhang R, Guizard S, Flores R, Armero A, Pont C, Steinbach D, Quesneville H, Cooke R, Salse J. Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes. Genome Biology and Evolution. 6: 12-33. PMID 24317974 DOI: 10.1093/Gbe/Evt200 |
0.785 |
|
| 2014 |
Murat F, Pont C, Salse J. Paleogenomics in Triticeae for translational research Current Plant Biology. 1: 34-39. DOI: 10.1016/J.Cpb.2014.08.003 |
0.812 |
|
| 2013 |
Pont C, Murat F, Guizard S, Flores R, Foucrier S, Bidet Y, Quraishi UM, Alaux M, Doležel J, Fahima T, Budak H, Keller B, Salvi S, Maccaferri M, Steinbach D, ... ... Salse J, et al. Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. The Plant Journal : For Cell and Molecular Biology. 76: 1030-44. PMID 24164652 DOI: 10.1111/Tpj.12366 |
0.829 |
|
| 2013 |
Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, et al. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nature Genetics. 45: 51-8. PMID 23179023 DOI: 10.1038/Ng.2470 |
0.825 |
|
| 2013 |
Delseny M, Salse J, Cooke R. Rice genomics: A tool for breeding rice and other cereals Cahiers Agricultures. 22: 466-474. DOI: 10.1684/Agr.2013.0626 |
0.354 |
|
| 2012 |
Bodénès C, Chancerel E, Gailing O, Vendramin GG, Bagnoli F, Durand J, Goicoechea PG, Soliani C, Villani F, Mattioni C, Koelewijn HP, Murat F, Salse J, Roussel G, Boury C, et al. Comparative mapping in the Fagaceae and beyond with EST-SSRs. Bmc Plant Biology. 12: 153. PMID 22931513 DOI: 10.1186/1471-2229-12-153 |
0.674 |
|
| 2012 |
Murat F, Van de Peer Y, Salse J. Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes. Genome Biology and Evolution. 4: 917-28. PMID 22833223 DOI: 10.1093/Gbe/Evs066 |
0.799 |
|
| 2012 |
Dibari B, Murat F, Chosson A, Gautier V, Poncet C, Lecomte P, Mercier I, Bergès H, Pont C, Blanco A, Salse J. Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses. Bmc Genomics. 13: 221. PMID 22672222 DOI: 10.1186/1471-2164-13-221 |
0.729 |
|
| 2012 |
Abrouk M, Zhang R, Murat F, Li A, Pont C, Mao L, Salse J. Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication. The Plant Cell. 24: 1776-92. PMID 22589464 DOI: 10.1105/Tpc.112.095752 |
0.778 |
|
| 2012 |
Salse J. In silico archeogenomics unveils modern plant genome organisation, regulation and evolution. Current Opinion in Plant Biology. 15: 122-30. PMID 22280839 DOI: 10.1016/J.Pbi.2012.01.001 |
0.669 |
|
| 2011 |
Bordat A, Savois V, Nicolas M, Salse J, Chauveau A, Bourgeois M, Potier J, Houtin H, Rond C, Murat F, Marget P, Aubert G, Burstin J. Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L. G3 (Bethesda, Md.). 1: 93-103. PMID 22384322 DOI: 10.1534/G3.111.000349 |
0.792 |
|
| 2011 |
Pont C, Murat F, Confolent C, Balzergue S, Salse J. RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.). Genome Biology. 12: R119. PMID 22136458 DOI: 10.1186/Gb-2011-12-12-R119 |
0.737 |
|
| 2011 |
Dobrovolskaya O, Boeuf C, Salse J, Pont C, Sourdille P, Bernard M, Salina E. Microsatellite mapping of Ae. speltoides and map-based comparative analysis of the S, G, and B genomes of Triticeae species. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 123: 1145-57. PMID 21792632 DOI: 10.1007/S00122-011-1655-Z |
0.576 |
|
| 2011 |
Gavranović H, Chauve C, Salse J, Tannier E. Mapping ancestral genomes with massive gene loss: a matrix sandwich problem. Bioinformatics (Oxford, England). 27: i257-65. PMID 21685079 DOI: 10.1093/bioinformatics/btr224 |
0.599 |
|
| 2011 |
Mayer KF, Martis M, Hedley PE, Simková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, ... ... Salse J, et al. Unlocking the barley genome by chromosomal and comparative genomics. The Plant Cell. 23: 1249-63. PMID 21467582 DOI: 10.1105/Tpc.110.082537 |
0.822 |
|
| 2011 |
Salse J, Feuillet C. Palaeogenomics in cereals: modeling of ancestors for modern species improvement. Comptes Rendus Biologies. 334: 205-11. PMID 21377615 DOI: 10.1016/J.Crvi.2010.12.014 |
0.676 |
|
| 2011 |
Quraishi UM, Abrouk M, Murat F, Pont C, Foucrier S, Desmaizieres G, Confolent C, Riviaère N, Charmet G, Paux E, Murigneux A, Guerreiro L, Lafarge S, Le Gouis J, Feuillet C, ... Salse J, et al. Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution Plant Journal. 65: 745-756. PMID 21251102 DOI: 10.1111/J.1365-313X.2010.04461.X |
0.848 |
|
| 2011 |
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, et al. The genome of Theobroma cacao Nature Genetics. 43: 101-108. PMID 21186351 DOI: 10.1038/Ng.736 |
0.841 |
|
| 2011 |
Quraishi UM, Murat F, Abrouk M, Pont C, Confolent C, Oury FX, Ward J, Boros D, Gebruers K, Delcour JA, Courtin CM, Bedo Z, Saulnier L, Guillon F, Balzergue S, ... ... Salse J, et al. Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). Functional & Integrative Genomics. 11: 71-83. PMID 20697765 DOI: 10.1007/S10142-010-0183-2 |
0.795 |
|
| 2010 |
Ueno S, Le Provost G, Léger V, Klopp C, Noirot C, Frigerio JM, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Léger P, Cabane C, et al. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak. Bmc Genomics. 11: 650. PMID 21092232 DOI: 10.1186/1471-2164-11-650 |
0.773 |
|
| 2010 |
Murat F, Xu JH, Tannier E, Abrouk M, Guilhot N, Pont C, Messing J, Salse J. Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution. Genome Research. 20: 1545-57. PMID 20876790 DOI: 10.1101/Gr.109744.110 |
0.855 |
|
| 2010 |
Abrouk M, Murat F, Pont C, Messing J, Jackson S, Faraut T, Tannier E, Plomion C, Cooke R, Feuillet C, Salse J. Palaeogenomics of plants: synteny-based modelling of extinct ancestors. Trends in Plant Science. 15: 479-87. PMID 20638891 DOI: 10.1016/J.Tplants.2010.06.001 |
0.856 |
|
| 2010 |
Choulet F, Wicker T, Rustenholz C, Paux E, Salse J, Leroy P, Schlub S, Le Paslier MC, Magdelenat G, Gonthier C, Couloux A, Budak H, Breen J, Pumphrey M, Liu S, et al. Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. The Plant Cell. 22: 1686-701. PMID 20581307 DOI: 10.1105/Tpc.110.074187 |
0.586 |
|
| 2010 |
Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Salse J, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747 |
0.794 |
|
| 2010 |
Argout X, Salse J, Aury JM, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Guiltinan M, Maximova S, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, et al. Deciphering the genome structure and paleohistory of Theobroma cacao Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4908.1 |
0.801 |
|
| 2010 |
Graziani M, Maccaferri M, Tuberosa R, Feuillet C, Salse J, Demontis A. Fine mapping approaches of two major QTLs for yield in durum wheat Journal of Biotechnology. 150: 501-502. DOI: 10.1016/J.Jbiotec.2010.09.783 |
0.333 |
|
| 2009 |
Salse J, Abrouk M, Murat F, Quraishi UM, Feuillet C. Improved criteria and comparative genomics tool provide new insights into grass paleogenomics Briefings in Bioinformatics. 10: 619-630. PMID 19720678 DOI: 10.1093/Bib/Bbp037 |
0.857 |
|
| 2009 |
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C. Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences of the United States of America. 106: 14908-13. PMID 19706486 DOI: 10.1073/Pnas.0902350106 |
0.781 |
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| 2009 |
Quraishi UM, Abrouk M, Bolot S, Pont C, Throude M, Guilhot N, Confolent C, Bortolini F, Praud S, Murigneux A, Charmet G, Salse J. Genomics in cereals: From genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection Functional and Integrative Genomics. 9: 473-484. PMID 19575250 DOI: 10.1007/S10142-009-0129-8 |
0.849 |
|
| 2009 |
Throude M, Bolot S, Bosio M, Pont C, Sarda X, Quraishi UM, Bourgis F, Lessard P, Rogowsky P, Ghesquiere A, Murigneux A, Charmet G, Perez P, Salse J. Structure and expression analysis of rice paleo duplications Nucleic Acids Research. 37: 1248-1259. PMID 19136467 DOI: 10.1093/Nar/Gkn1048 |
0.798 |
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| 2009 |
Bolot S, Abrouk M, Masood-Quraishi U, Stein N, Messing J, Feuillet C, Salse J. The 'inner circle' of the cereal genomes. Current Opinion in Plant Biology. 12: 119-25. PMID 19095493 DOI: 10.1016/J.Pbi.2008.10.011 |
0.817 |
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| 2008 |
Salse J, Chagué V, Bolot S, Magdelenat G, Huneau C, Pont C, Belcram H, Couloux A, Gardais S, Evrard A, Segurens B, Charles M, Ravel C, Samain S, Charmet G, et al. New insights into the origin of the B genome of hexaploid wheat: evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides. Bmc Genomics. 9: 555. PMID 19032732 DOI: 10.1186/1471-2164-9-555 |
0.617 |
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| 2008 |
Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, Leroy P, Korol A, Michalak M, Kianian S, Spielmeyer W, Lagudah E, Somers D, Kilian A, Alaux M, Vautrin S, et al. A physical map of the 1-gigabase bread wheat chromosome 3B. Science (New York, N.Y.). 322: 101-4. PMID 18832645 DOI: 10.1126/Science.1161847 |
0.544 |
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| 2008 |
Bourgis F, Guyot R, Gherbi H, Tailliez E, Amabile I, Salse J, Lorieux M, Delseny M, Ghesquière A. Characterization of the major fragance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 117: 353-68. PMID 18491070 DOI: 10.1007/S00122-008-0780-9 |
0.557 |
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| 2008 |
Chantret N, Salse J, Sabot F, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Beckert M, Aubourg S, Weissenbach J, Caboche M, et al. Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species. Journal of Molecular Evolution. 66: 138-50. PMID 18274696 DOI: 10.1007/S00239-008-9066-8 |
0.571 |
|
| 2008 |
Salse J, Bolot S, Throude M, Jouffe V, Piegu B, Quraishi UM, Calcagno T, Cooke R, Delseny M, Feuillet C. Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution. The Plant Cell. 20: 11-24. PMID 18178768 DOI: 10.1105/Tpc.107.056309 |
0.859 |
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| 2008 |
Paux E, Legeai F, Guilhot N, Adam-Blondon AF, Alaux M, Salse J, Sourdille P, Leroy P, Feuillet C. Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis. Functional & Integrative Genomics. 8: 29-32. PMID 18038165 DOI: 10.1007/S10142-007-0068-1 |
0.532 |
|
| 2006 |
Gu YQ, Salse J, Coleman-Derr D, Dupin A, Crossman C, Lazo GR, Huo N, Belcram H, Ravel C, Charmet G, Charles M, Anderson OD, Chalhoub B. Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes. Genetics. 174: 1493-504. PMID 17028342 DOI: 10.1534/Genetics.106.060756 |
0.591 |
|
| 2005 |
Chantret N, Salse J, Sabot F, Rahman S, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Beckert M, Aubourg S, Weissenbach J, et al. Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). The Plant Cell. 17: 1033-45. PMID 15749759 DOI: 10.1105/Tpc.104.029181 |
0.671 |
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| 2004 |
Salse J, Piégu B, Cooke R, Delseny M. New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome. The Plant Journal : For Cell and Molecular Biology. 38: 396-409. PMID 15086801 DOI: 10.1111/J.1365-313X.2004.02058.X |
0.611 |
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| 2002 |
Salse J, Piégu B, Cooke R, Delseny M. Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing rice genome sequencing project. Nucleic Acids Research. 30: 2316-28. PMID 12034818 DOI: 10.1093/Nar/30.11.2316 |
0.665 |
|
| 2002 |
Chen M, Presting G, Barbazuk WB, Goicoechea JL, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, ... ... Salse J, et al. An integrated physical and genetic map of the rice genome. The Plant Cell. 14: 537-45. PMID 11910002 DOI: 10.1105/Tpc.010485 |
0.642 |
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