Sonia Guil - Related publications

Affiliations: 
IDIBELL 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Wang E, Aifantis I. RNA Splicing and Cancer. Trends in Cancer. PMID 32434734 DOI: 10.1016/j.trecan.2020.04.011   
2020 Qin H, Ni H, Liu Y, Yuan Y, Xi T, Li X, Zheng L. RNA-binding proteins in tumor progression. Journal of Hematology & Oncology. 13: 90. PMID 32653017 DOI: 10.1186/s13045-020-00927-w   
2020 Gavrilov AA, Zharikova AA, Galitsyna AA, Luzhin AV, Rubanova NM, Golov AK, Petrova NV, Logacheva MD, Kantidze OL, Ulianov SV, Magnitov MD, Mironov AA, Razin SV. Studying RNA-DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics. Nucleic Acids Research. PMID 32479626 DOI: 10.1093/nar/gkaa457   
2020 Sun L, Liu WK, Du XW, Liu XL, Li G, Yao Y, Han T, Li WY, Gu J. Large-scale transcriptome analysis identified RNA methylation regulators as novel prognostic signatures for lung adenocarcinoma. Annals of Translational Medicine. 8: 751. PMID 32647676 DOI: 10.21037/atm-20-3744   
2020 Park SY, Choi JH, Oh DH, Johnson JC, Dassanayake M, Jeong DH, Oh MH. Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana. Genes & Genomics. PMID 32648234 DOI: 10.1007/s13258-020-00964-2   
2020 Tian S, Curnutte HA, Trcek T. RNA Granules: A View from the RNA Perspective. Molecules (Basel, Switzerland). 25. PMID 32650583 DOI: 10.3390/molecules25143130   
2020 Fazal FM, Chang HY. Subcellular Spatial Transcriptomes: Emerging Frontier for Understanding Gene Regulation. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32482897 DOI: 10.1101/sqb.2019.84.040352   
2020 Chen Y, Lin Y, Shu Y, He J, Gao W. Interaction between N-methyladenosine (mA) modification and noncoding RNAs in cancer. Molecular Cancer. 19: 94. PMID 32443966 DOI: 10.1186/s12943-020-01207-4   
2020 Cai Z, Cao C, Ji L, Ye R, Wang D, Xia C, Wang S, Du Z, Hu N, Yu X, Chen J, Wang L, Yang X, He S, Xue Y. RIC-seq for global in situ profiling of RNA-RNA spatial interactions. Nature. PMID 32499643 DOI: 10.1038/s41586-020-2249-1   
2020 Kilchert C, Kecman T, Priest E, Hester S, Aydin E, Kus K, Rossbach O, Castello A, Mohammed S, Vasiljeva L. System-wide analyses of the fission yeast poly(A) RNA interactome reveal insights into organization and function of RNA-protein complexes. Genome Research. PMID 32554781 DOI: 10.1101/gr.257006.119   
2020 Liu Y, Shi SL. The roles of hnRNP A2/B1 in RNA biology and disease. Wiley Interdisciplinary Reviews. Rna. e1612. PMID 32588964 DOI: 10.1002/wrna.1612   
2020 Sun KK, Shen XJ, Yang D, Jiao Y, Wu XY. Integrated Profiling Revealed Potential Regulatory Networks Among Long Noncoding RNAs and mRNAs in Mucosal Gastric Cancer. Technology in Cancer Research & Treatment. 19: 1533033820930119. PMID 32468960 DOI: 10.1177/1533033820930119   
2020 Small ID, Schallenberg-Rüdinger M, Takenaka M, Mireau H, Ostersetzer-Biran O. Plant organellar RNA editing: what 30 years of research has revealed. The Plant Journal : For Cell and Molecular Biology. 101: 1040-1056. PMID 31630458 DOI: 10.1111/tpj.14578   
2020 Braselmann E, Rathbun C, Richards EM, Palmer AE. Illuminating RNA Biology: Tools for Imaging RNA in Live Mammalian Cells. Cell Chemical Biology. PMID 32640188 DOI: 10.1016/j.chembiol.2020.06.010   
2020 Maguire S, Lohman GJS, Guan S. A low-bias and sensitive small RNA library preparation method using randomized splint ligation. Nucleic Acids Research. PMID 32496547 DOI: 10.1093/nar/gkaa480   
2020 Friedrich M, Lazaridou MF, Rahn J, Vaxevanis C, Heimer N, Jasinski-Bergner S, Seliger B. Identification of immunomodulatory RNA-binding proteins in tumors. Methods in Enzymology. 636: 339-350. PMID 32178825 DOI: 10.1016/bs.mie.2019.05.042   
2020 Wu H, Singh S, Xie Z, Li X, Li H. Landscape characterization of chimeric RNAs in colorectal cancer. Cancer Letters. PMID 32534173 DOI: 10.1016/j.canlet.2020.05.037   
2020 Crossley MP, Bocek MJ, Hamperl S, Swigut T, Cimprich KA. qDRIP: a method to quantitatively assess RNA-DNA hybrid formation genome-wide. Nucleic Acids Research. PMID 32544226 DOI: 10.1093/nar/gkaa500   
2020 Sedano MJ, Harrison AL, Zilaie M, Das C, Choudhari R, Ramos E, Gadad SS. Emerging Roles of Estrogen-Regulated Enhancer and Long Non-Coding RNAs. International Journal of Molecular Sciences. 21. PMID 32466143 DOI: 10.3390/ijms21103711   
2020 Kar S, Geffers R, Samii A, Bertalanffy H. Library Preparation for Small RNA Transcriptome Sequencing in Patients Affected by Cerebral Cavernous Malformations. Methods in Molecular Biology (Clifton, N.J.). 2152: 467-478. PMID 32524574 DOI: 10.1007/978-1-0716-0640-7_35   
2020 Martínez-Fernández V, Cuevas-Bermúdez A, Gutiérrez-Santiago F, Garrido-Godino AI, Rodríguez-Galán O, Jordán-Pla A, Lois S, Triviño JC, de la Cruz J, Navarro F. Prefoldin-like Bud27 influences the transcription of ribosomal components and ribosome biogenesis in . Rna (New York, N.Y.). PMID 32503921 DOI: 10.1261/rna.075507.120   
2020 Wu J, Yang J, Cho WC, Zheng Y. Argonaute proteins: Structural features, functions and emerging roles. Journal of Advanced Research. 24: 317-324. PMID 32455006 DOI: 10.1016/j.jare.2020.04.017   
2020 Tauber D, Tauber G, Parker R. Mechanisms and Regulation of RNA Condensation in RNP Granule Formation. Trends in Biochemical Sciences. PMID 32475683 DOI: 10.1016/j.tibs.2020.05.002   
2020 Yang Q, Kong S, Zheng M, Hong Y, Sun J, Ming X, Gu Y, Shen X, Ju S. Long intergenic noncoding RNA LINC00173 as a potential serum biomarker for diagnosis of non-small-cell lung cancer. Cancer Biomarkers : Section a of Disease Markers. PMID 32623390 DOI: 10.3233/CBM-201616   
2020 Yeganeh M, Hernandez N. RNA polymerase III transcription as a disease factor. Genes & Development. 34: 865-882. PMID 32611613 DOI: 10.1101/gad.333989.119   
2020 Yildirim O, Izgu EC, Damle M, Chalei V, Ji F, Sadreyev RI, Szostak JW, Kingston RE. S-phase Enriched Non-coding RNAs Regulate Gene Expression and Cell Cycle Progression. Cell Reports. 31: 107629. PMID 32402276 DOI: 10.1016/j.celrep.2020.107629   
2020 So BR, Dreyfuss G. Myriad RNAs and RNA-Binding Proteins Control Cell Functions, Explain Diseases, and Guide New Therapies. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32651264 DOI: 10.1101/sqb.2019.84.040469   
2020 Chantarachot T, Sorenson RS, Hummel M, Ke H, Kettenburg AT, Chen D, Aiyetiwa K, Dehesh K, Eulgem T, Sieburth LE, Bailey-Serres J. DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs. Nature Plants. PMID 32483330 DOI: 10.1038/s41477-020-0681-8   
2020 Wu Y, Yang Y, Gu H, Tao B, Zhang E, Wei J, Wang Z, Liu A, Sun R, Chen M, Fan Y, Mao R. Multi-omics analysis reveals the functional transcription and potential translation of enhancers. International Journal of Cancer. PMID 32573785 DOI: 10.1002/ijc.33132   
2020 Mao S, Pachter L, Tse D, Kannan S. RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition. Plos One. 15: e0232946. PMID 32484809 DOI: 10.1371/journal.pone.0232946   
2020 Liu M, Zhang Z, Ding C, Wang T, Kelly B, Wang P. Transcriptomic Analysis of Extracellular RNA Governed by the Endocytic Adaptor Protein Cin1 of . Frontiers in Cellular and Infection Microbiology. 10: 256. PMID 32656093 DOI: 10.3389/fcimb.2020.00256   
2020 Mehta D, Anjali K, Ramesh A. Discovery of ANTAR-RNAs and their mechanism of action in mycobacteria. Journal of Molecular Biology. PMID 32422150 DOI: 10.1016/j.jmb.2020.05.003   
2020 McElhinney JMWR, Hasan A, Sajini AA. The epitranscriptome landscape of small noncoding RNAs in stem cells. Stem Cells (Dayton, Ohio). PMID 32598085 DOI: 10.1002/stem.3233   
2020 Fang X, Wu Z, Raitskin O, Webb K, Voigt P, Lu T, Howard M, Dean C. The 3' processing of antisense RNAs physically links to chromatin-based transcriptional control. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541063 DOI: 10.1073/pnas.2007268117   
2020 Maranon DG, Anderson JR, Maranon AG, Wilusz J. The interface between coronaviruses and host cell RNA biology: Novel potential insights for future therapeutic intervention. Wiley Interdisciplinary Reviews. Rna. e1614. PMID 32638509 DOI: 10.1002/wrna.1614   
2020 Cabral SE, Mowry KL. Organizing the oocyte: RNA localization meets phase separation. Current Topics in Developmental Biology. 140: 87-118. PMID 32591084 DOI: 10.1016/bs.ctdb.2020.02.007   
2020 Sabath K, Stäubli ML, Marti S, Leitner A, Moes M, Jonas S. INTS10-INTS13-INTS14 form a functional module of Integrator that binds nucleic acids and the cleavage module. Nature Communications. 11: 3422. PMID 32647223 DOI: 10.1038/s41467-020-17232-2   
2020 Sabath K, Stäubli ML, Marti S, Leitner A, Moes M, Jonas S. INTS10-INTS13-INTS14 form a functional module of Integrator that binds nucleic acids and the cleavage module. Nature Communications. 11: 3422. PMID 32647223 DOI: 10.1038/s41467-020-17232-2   
2020 Furlan M, Tanaka I, Leonardi T, de Pretis S, Pelizzola M. Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts. Frontiers in Genetics. 11: 394. PMID 32425981 DOI: 10.3389/fgene.2020.00394   
2020 Wu H, Qin W, Lu S, Wang X, Zhang J, Sun T, Hu X, Li Y, Chen Q, Wang Y, Zhao H, Piao H, Zhang R, Wei M. Long noncoding RNA ZFAS1 promoting small nucleolar RNA-mediated 2'-O-methylation via NOP58 recruitment in colorectal cancer. Molecular Cancer. 19: 95. PMID 32443980 DOI: 10.1186/s12943-020-01201-w   
2020 Casas-Vila N, Sayols S, Pérez-Martínez L, Scheibe M, Butter F. The RNA fold interactome of evolutionary conserved RNA structures in S. cerevisiae. Nature Communications. 11: 2789. PMID 32493961 DOI: 10.1038/s41467-020-16555-4   
2020 Long Y, Hwang T, Gooding AR, Goodrich KJ, Rinn JL, Cech TR. RNA is essential for PRC2 chromatin occupancy and function in human pluripotent stem cells. Nature Genetics. PMID 32632336 DOI: 10.1038/s41588-020-0662-x   
2020 Bär C, Chatterjee S, Pires IF, Rodrigues P, Sluijter JPG, Boon RA, Nevado RM, Andrés V, Sansonetti M, de Windt L, Ciccarelli M, Hamdani N, Heymans S, Videira RF, Tocchetti CG, et al. Non-coding RNAs - Update on mechanisms and therapeutic targets from the ESC Working Groups of Myocardial Function and Cellular Biology of the Heart. Cardiovascular Research. PMID 32638021 DOI: 10.1093/cvr/cvaa195   
2020 Patton RD, Sanjeev M, Woodward LA, Mabin JW, Bundschuh R, Singh G. Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA. Rna (New York, N.Y.). PMID 32467309 DOI: 10.1261/rna.074856.120   
2020 Jahanshahi S, Li Y. An Effective Method for Quantifying RNA Expression of IbsC-SibC, a Type I Toxin-Antitoxin System in Escherichia coli. Chembiochem : a European Journal of Chemical Biology. PMID 32516493 DOI: 10.1002/cbic.202000280   
2020 Jahanshahi S, Li Y. An Effective Method for Quantifying RNA Expression of IbsC-SibC, a Type I Toxin-Antitoxin System in Escherichia coli. Chembiochem : a European Journal of Chemical Biology. PMID 32516493 DOI: 10.1002/cbic.202000280   
2020 Rodosthenous RS, Hutchins E, Reiman R, Yeri AS, Srinivasan S, Whitsett TG, Ghiran I, Silverman MG, Laurent LC, Van Keuren-Jensen K, Das S. Profiling Extracellular Long RNA Transcriptome in Human Plasma and Extracellular Vesicles for Biomarker Discovery. Iscience. 23: 101182. PMID 32512385 DOI: 10.1016/j.isci.2020.101182   
2020 Sanson M, Flores AR. Group A Streptococcus Transcriptome Analysis. Methods in Molecular Biology (Clifton, N.J.). 2136: 113-133. PMID 32430816 DOI: 10.1007/978-1-0716-0467-0_8   
2020 Kim YK. RNA Therapy: Current Status and Future Potential. Chonnam Medical Journal. 56: 87-93. PMID 32509554 DOI: 10.4068/cmj.2020.56.2.87   
2020 Knutson SD, Heemstra JM. EndoVIPER-seq for Improved Detection of A-to-I Editing Sites in Cellular RNA. Current Protocols in Chemical Biology. 12: e82. PMID 32469473 DOI: 10.1002/cpch.82