| Year |
Citation |
Score |
| 2024 |
Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, ... ... Pisani D, et al. Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature Ecology & Evolution. PMID 38216617 DOI: 10.1038/s41559-023-02299-z |
0.786 |
|
| 2023 |
Mahendrarajah TA, Moody ERR, Schrempf D, Szánthó LL, Dombrowski N, Davín AA, Pisani D, Donoghue PCJ, Szöllősi GJ, Williams TA, Spang A. ATP synthase evolution on a cross-braced dated tree of life. Nature Communications. 14: 7456. PMID 37978174 DOI: 10.1038/s41467-023-42924-w |
0.572 |
|
| 2023 |
Donoghue PCJ, Kay C, Spang A, Szöllősi G, Nenarokova A, Moody ERR, Pisani D, Williams TA. Defining eukaryotes to dissect eukaryogenesis. Current Biology : Cb. 33: R919-R929. PMID 37699353 DOI: 10.1016/j.cub.2023.07.048 |
0.586 |
|
| 2023 |
Smith TJ, Sansom RS, Pisani D, Donoghue PCJ. Fossilization can mislead analyses of phenotypic disparity. Proceedings. Biological Sciences. 290: 20230522. PMID 37554036 DOI: 10.1098/rspb.2023.0522 |
0.533 |
|
| 2023 |
Carlisle E, Janis CM, Pisani D, Donoghue PCJ, Silvestro D. A timescale for placental mammal diversification based on Bayesian modeling of the fossil record. Current Biology : Cb. PMID 37379845 DOI: 10.1016/j.cub.2023.06.016 |
0.53 |
|
| 2023 |
Juravel K, Porras L, Höhna S, Pisani D, Wörheide G. Exploring genome gene content and morphological analysis to test recalcitrant nodes in the animal phylogeny. Plos One. 18: e0282444. PMID 36952565 DOI: 10.1371/journal.pone.0282444 |
0.369 |
|
| 2023 |
Wu R, Pisani D, Donoghue PCJ. The unbearable uncertainty of panarthropod relationships. Biology Letters. 19: 20220497. PMID 36628953 DOI: 10.1098/rsbl.2022.0497 |
0.615 |
|
| 2022 |
Pisani D, Rossi ME, Marlétaz F, Feuda R. Phylogenomics: Is less more when using large-scale datasets? Current Biology : Cb. 32: R1340-R1342. PMID 36538883 DOI: 10.1016/j.cub.2022.11.019 |
0.813 |
|
| 2022 |
Giacomelli M, Rossi ME, Lozano-Fernandez J, Feuda R, Pisani D. Resolving tricky nodes in the tree of life through amino acid recoding. Iscience. 25: 105594. PMID 36458253 DOI: 10.1016/j.isci.2022.105594 |
0.793 |
|
| 2022 |
Mills DB, Boyle RA, Daines SJ, Sperling EA, Pisani D, Donoghue PCJ, Lenton TM. Eukaryogenesis and oxygen in Earth history. Nature Ecology & Evolution. PMID 35449457 DOI: 10.1038/s41559-022-01733-y |
0.458 |
|
| 2022 |
Cai C, Tihelka E, Giacomelli M, Lawrence JF, Ślipiński A, Kundrata R, Yamamoto S, Thayer MK, Newton AF, Leschen RAB, Gimmel ML, Lü L, Engel MS, Bouchard P, Huang D, ... Pisani D, et al. Integrated phylogenomics and fossil data illuminate the evolution of beetles. Royal Society Open Science. 9: 211771. PMID 35345430 DOI: 10.1098/rsos.211771 |
0.834 |
|
| 2021 |
Gower DJ, Fleming JF, Pisani D, Vonk FJ, Kerkkamp HMI, Peichl L, Meimann S, Casewell NR, Henkel CV, Richardson MK, Sanders KL, Simões BF. Eye-Transcriptome and Genome-Wide Sequencing for Scolecophidia: Implications for Inferring the Visual System of the Ancestral Snake. Genome Biology and Evolution. 13. PMID 34791190 DOI: 10.1093/gbe/evab253 |
0.306 |
|
| 2021 |
Tihelka E, Cai C, Giacomelli M, Lozano-Fernandez J, Rota-Stabelli O, Huang D, Engel MS, Donoghue PCJ, Pisani D. The evolution of insect biodiversity. Current Biology : Cb. 31: R1299-R1311. PMID 34637741 DOI: 10.1016/j.cub.2021.08.057 |
0.829 |
|
| 2021 |
Klein CG, Pisani D, Field DJ, Lakin R, Wills MA, Longrich NR. Evolution and dispersal of snakes across the Cretaceous-Paleogene mass extinction. Nature Communications. 12: 5335. PMID 34521829 DOI: 10.1038/s41467-021-25136-y |
0.654 |
|
| 2021 |
Feuda R, Goulty M, Zadra N, Gasparetti T, Rosato E, Pisani D, Rizzoli A, Segata N, Ometto L, Stabelli OR. Phylogenomics of opsin genes in Diptera reveals lineage-specific events and contrasting evolutionary dynamics in Anopheles and Drosophila. Genome Biology and Evolution. PMID 34270718 DOI: 10.1093/gbe/evab170 |
0.798 |
|
| 2021 |
Beavan AJS, Pisani D, Donoghue PCJ. Diversification dynamics of total-, stem-, and crown-groups are compatible with molecular clock estimates of divergence times. Science Advances. 7. PMID 34117058 DOI: 10.1126/sciadv.abf2257 |
0.535 |
|
| 2020 |
Tihelka E, Cai C, Giacomelli M, Pisani D, Donoghue PCJ. Integrated phylogenomic and fossil evidence of stick and leaf insects (Phasmatodea) reveal a Permian-Triassic co-origination with insectivores. Royal Society Open Science. 7: 201689. PMID 33391817 DOI: 10.1098/rsos.201689 |
0.811 |
|
| 2020 |
Tihelka E, Cai C, Pisani D, Donoghue PCJ. Mitochondrial genomes illuminate the evolutionary history of the Western honey bee (Apis mellifera). Scientific Reports. 10: 14515. PMID 32884034 DOI: 10.1038/S41598-020-71393-0 |
0.653 |
|
| 2020 |
Pisani D, Rota-Stabelli O, Feuda R. Sensory Neuroscience: A Taste for Light and the Origin of Animal Vision. Current Biology : Cb. 30: R773-R775. PMID 32634420 DOI: 10.1016/J.Cub.2020.05.009 |
0.789 |
|
| 2020 |
Simões BF, Gower DJ, Rasmussen AR, Sarker MAR, Fry GC, Casewell NR, Harrison RA, Hart NS, Partridge JC, Hunt DM, Chang BS, Pisani D, Sanders KL. Spectral Diversification and Trans-Species Allelic Polymorphism during the Land-to-Sea Transition in Snakes. Current Biology : Cb. PMID 32470360 DOI: 10.1016/J.Cub.2020.04.061 |
0.325 |
|
| 2020 |
Beavan AJS, Donoghue PCJ, Beaumont MA, Pisani D. Performance of a priori and a posteriori calibration strategies in divergence time estimation. Genome Biology and Evolution. PMID 32442306 DOI: 10.1093/Gbe/Evaa105 |
0.589 |
|
| 2020 |
Lozano-Fernandez J, Tanner AR, Puttick MN, Vinther J, Edgecombe GD, Pisani D. A Cambrian-Ordovician Terrestrialization of Arachnids. Frontiers in Genetics. 11: 182. PMID 32218802 DOI: 10.3389/Fgene.2020.00182 |
0.807 |
|
| 2020 |
Cai C, Tihelka E, Pisani D, Donoghue PCJ. Data curation and modeling of compositional heterogeneity in insect phylogenomics: A case study of the phylogeny of Dytiscoidea (Coleoptera: Adephaga). Molecular Phylogenetics and Evolution. 147: 106782. PMID 32147574 DOI: 10.1016/J.Ympev.2020.106782 |
0.649 |
|
| 2020 |
Fleming JF, Feuda R, Roberts NW, Pisani D. A novel approach to investigate the effect of tree reconstruction artifacts in single gene analysis clarifies opsin evolution in non-bilaterian metazoans. Genome Biology and Evolution. PMID 32031627 DOI: 10.1093/Gbe/Evaa015 |
0.826 |
|
| 2020 |
da Fonseca RR, Couto A, Machado AM, Brejova B, Albertin CB, Silva F, Gardner P, Baril T, Hayward A, Campos A, Ribeiro ÂM, Barrio-Hernandez I, Hoving HJ, Tafur-Jimenez R, Chu C, ... ... Pisani D, et al. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience. 9. PMID 31942620 DOI: 10.1093/Gigascience/Giz152 |
0.419 |
|
| 2019 |
Lozano-Fernandez J, Tanner AR, Giacomelli M, Carton R, Vinther J, Edgecombe GD, Pisani D. Author Correction: Increasing species sampling in chelicerate genomic-scale datasets provides support for monophyly of Acari and Arachnida. Nature Communications. 10: 4534. PMID 31575855 DOI: 10.1038/S41467-019-12259-6 |
0.793 |
|
| 2019 |
Lozano-Fernandez J, Giacomelli M, Fleming J, Chen A, Vinther J, Thomsen PF, Glenner H, Palero F, Legg DA, Iliffe TM, Pisani D, Olesen J. Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling. Genome Biology and Evolution. PMID 31270537 DOI: 10.1093/Gbe/Evz097 |
0.814 |
|
| 2019 |
Lozano-Fernandez J, Tanner AR, Giacomelli M, Carton R, Vinther J, Edgecombe GD, Pisani D. Increasing species sampling in chelicerate genomic-scale datasets provides support for monophyly of Acari and Arachnida. Nature Communications. 10: 2295. PMID 31127117 DOI: 10.1038/S41467-019-10244-7 |
0.823 |
|
| 2019 |
Zhao Y, Vinther J, Parry LA, Wei F, Green E, Pisani D, Hou X, Edgecombe GD, Cong P. Cambrian Sessile, Suspension Feeding Stem-Group Ctenophores and Evolution of the Comb Jelly Body Plan. Current Biology : Cb. PMID 30905603 DOI: 10.1016/J.Cub.2019.02.036 |
0.425 |
|
| 2019 |
Siu-Ting K, Torres-Sánchez M, San Mauro D, Wilcockson D, Wilkinson M, Pisani D, O'Connell MJ, Creevey CJ. Inadvertent paralog inclusion drives artefactual topologies and timetree estimates in phylogenomics. Molecular Biology and Evolution. PMID 30903171 DOI: 10.1093/Molbev/Msz067 |
0.838 |
|
| 2019 |
Pett W, Adamski M, Adamska M, Francis WR, Eitel M, Pisani D, Wörheide G. The role of homology and orthology in the phylogenomic analysis of metazoan gene content. Molecular Biology and Evolution. PMID 30690573 DOI: 10.1093/Molbev/Msz013 |
0.478 |
|
| 2019 |
Püschel HP, O'Reilly JE, Pisani D, Donoghue PCJ. The impact of fossil stratigraphic ranges on tip‐calibration, and the accuracy and precision of divergence time estimates Palaeontology. 63: 67-83. DOI: 10.1111/Pala.12443 |
0.535 |
|
| 2019 |
Puttick MN, O'Reilly JE, Pisani D, Donoghue PCJ. Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model Palaeontology. 62: 1-17. DOI: 10.1111/Pala.12388 |
0.331 |
|
| 2019 |
Howard RJ, Edgecombe GD, Legg DA, Pisani D, Lozano-Fernandez J. Exploring the evolution and terrestrialization of scorpions (Arachnida: Scorpiones) with rocks and clocks Organisms Diversity & Evolution. 19: 71-86. DOI: 10.1007/S13127-019-00390-7 |
0.832 |
|
| 2018 |
Fleming JF, Kristensen RM, Sørensen MV, Park TS, Arakawa K, Blaxter M, Rebecchi L, Guidetti R, Williams TA, Roberts NW, Vinther J, Pisani D. Molecular palaeontology illuminates the evolution of ecdysozoan vision. Proceedings. Biological Sciences. 285. PMID 30518575 DOI: 10.1098/Rspb.2018.2180 |
0.354 |
|
| 2018 |
Betts HC, Puttick MN, Clark JW, Williams TA, Donoghue PCJ, Pisani D. Integrated genomic and fossil evidence illuminates life's early evolution and eukaryote origin. Nature Ecology & Evolution. PMID 30127539 DOI: 10.1038/S41559-018-0644-X |
0.574 |
|
| 2018 |
Leite DJ, Baudouin-Gonzalez L, Iwasaki-Yokozawa S, Lozano-Fernandez J, Turetzek N, Akiyama-Oda Y, Prpic NM, Pisani D, Oda H, Sharma PP, McGregor AP. Homeobox gene duplication and divergence in arachnids. Molecular Biology and Evolution. PMID 29924328 DOI: 10.1093/Molbev/Msy125 |
0.798 |
|
| 2018 |
Tarver JE, Taylor RS, Puttick MN, Lloyd GT, Pett W, Fromm B, Schirrmeister BE, Pisani D, Peterson KJ, Donoghue PCJ. Well-annotated microRNAomes do not evidence pervasive miRNA loss. Genome Biology and Evolution. PMID 29788279 DOI: 10.1093/Gbe/Evy096 |
0.563 |
|
| 2018 |
Puttick MN, Morris JL, Williams TA, Cox CJ, Edwards D, Kenrick P, Pressel S, Wellman CH, Schneider H, Pisani D, Donoghue PCJ. The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte. Current Biology : Cb. PMID 29456145 DOI: 10.1016/J.Cub.2018.01.063 |
0.615 |
|
| 2018 |
O'Reilly JE, Puttick MN, Pisani D, Donoghue PCJ. Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data. Palaeontology. 61: 105-118. PMID 29398726 DOI: 10.1111/Pala.12330 |
0.642 |
|
| 2018 |
O'Reilly JE, Puttick MN, Pisani D, Donoghue PCJ. Empirical realism of simulated data is more important than the model used to generate it: a reply to Goloboff et al
. Palaeontology. 61: 631-635. DOI: 10.1111/Pala.12361 |
0.516 |
|
| 2017 |
Feuda R, Dohrmann M, Pett W, Philippe H, Rota-Stabelli O, Lartillot N, Wörheide G, Pisani D. Improved Modeling of Compositional Heterogeneity Supports Sponges as Sister to All Other Animals. Current Biology : Cb. 27: 3864-3870.e4. PMID 29199080 DOI: 10.1016/J.Cub.2017.11.008 |
0.808 |
|
| 2017 |
Puttick MN, O'Reilly JE, Oakley D, Tanner AR, Fleming JF, Clark J, Holloway L, Lozano-Fernandez J, Parry LA, Tarver JE, Pisani D, Donoghue PCJ. Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al. Proceedings. Biological Sciences. 284. PMID 29021176 DOI: 10.1098/Rspb.2017.1636 |
0.807 |
|
| 2017 |
Sánchez-Baracaldo P, Raven JA, Pisani D, Knoll AH. Early photosynthetic eukaryotes inhabited low-salinity habitats. Proceedings of the National Academy of Sciences of the United States of America. PMID 28808007 DOI: 10.1073/Pnas.1620089114 |
0.468 |
|
| 2017 |
Lozano-Fernandez J, Dos Reis M, Donoghue PCJ, Pisani D. RelTime rates collapses to a strict clock when estimating the timeline of animal diversification. Genome Biology and Evolution. PMID 28449025 DOI: 10.1093/Gbe/Evx079 |
0.804 |
|
| 2017 |
Tanner AR, Fuchs D, Winkelmann IE, Gilbert MT, Pankey MS, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR, Pisani D, Vinther J. Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution. Proceedings. Biological Sciences. 284. PMID 28250188 DOI: 10.1098/Rspb.2016.2818 |
0.461 |
|
| 2017 |
Puttick MN, O'Reilly JE, Tanner AR, Fleming JF, Clark J, Holloway L, Lozano-Fernandez J, Parry LA, Tarver JE, Pisani D, Donoghue PC. Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data. Proceedings. Biological Sciences. 284. PMID 28077778 DOI: 10.1098/Rspb.2016.2290 |
0.811 |
|
| 2017 |
McGill LM, Fitzpatrick DA, Pisani D, Burnell AM. Estimation of phylogenetic divergence times in Panagrolaimidae and other nematodes using relaxed molecular clocks calibrated with insect and crustacean fossils Nematology. 19: 899-913. DOI: 10.1163/15685411-00003096 |
0.584 |
|
| 2016 |
Ramasamy S, Ometto L, Crava CM, Revadi S, Kaur R, Horner D, Pisani D, Dekker T, Anfora G, Rota-Stabelli O. The evolution of olfactory gene families in Drosophila and the genomic basis of chemical-ecological adaptation in Drosophila suzukii. Genome Biology and Evolution. PMID 27435796 DOI: 10.1093/Gbe/Evw160 |
0.807 |
|
| 2016 |
Lozano-Fernandez J, Carton R, Tanner AR, Puttick MN, Blaxter M, Vinther J, Olesen J, Giribet G, Edgecombe GD, Pisani D. A molecular palaeobiological exploration of arthropod terrestrialization. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27325830 DOI: 10.1098/Rstb.2015.0133 |
0.822 |
|
| 2016 |
O'Reilly JE, Puttick MN, Parry L, Tanner AR, Tarver JE, Fleming J, Pisani D, Donoghue PC. Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data. Biology Letters. 12. PMID 27095266 DOI: 10.1098/Rsbl.2016.0081 |
0.594 |
|
| 2016 |
Pisani D, Pett W, Dohrmann M, Feuda R, Rota-Stabelli O, Philippe H, Lartillot N, Wörheide G. Reply to Halanych et al.: Ctenophore misplacement is corroborated by independent datasets. Proceedings of the National Academy of Sciences of the United States of America. PMID 26862176 DOI: 10.1073/Pnas.1525718113 |
0.774 |
|
| 2016 |
Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D. The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference. Genome Biology and Evolution. PMID 26733575 DOI: 10.1093/Gbe/Evv261 |
0.726 |
|
| 2015 |
Pisani D, Pett W, Dohrmann M, Feuda R, Rota-Stabelli O, Philippe H, Lartillot N, Wörheide G. Genomic data do not support comb jellies as the sister group to all other animals. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621703 DOI: 10.1073/Pnas.1518127112 |
0.835 |
|
| 2015 |
Pisani D, Liu AG. Animal Evolution: Only Rocks Can Set the Clock. Current Biology : Cb. 25: R1079-81. PMID 26583898 DOI: 10.1016/J.Cub.2015.10.015 |
0.387 |
|
| 2015 |
Akanni WA, Wilkinson M, Creevey CJ, Foster PG, Pisani D. Implementing and testing Bayesian and maximum-likelihood supertree methods in phylogenetics. Royal Society Open Science. 2: 140436. PMID 26361544 DOI: 10.1098/Rsos.140436 |
0.813 |
|
| 2015 |
Akanni WA, Siu-Ting K, Creevey CJ, McInerney JO, Wilkinson M, Foster PG, Pisani D. Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370: 20140337. PMID 26323767 DOI: 10.1098/Rstb.2014.0337 |
0.817 |
|
| 2015 |
McInerney J, Pisani D, O'Connell MJ. The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26323755 DOI: 10.1098/Rstb.2014.0323 |
0.714 |
|
| 2015 |
Longrich NR, Vinther J, Pyron RA, Pisani D, Gauthier JA. Biogeography of worm lizards (Amphisbaenia) driven by end-Cretaceous mass extinction. Proceedings. Biological Sciences / the Royal Society. 282: 20143034. PMID 25833855 DOI: 10.1098/Rspb.2014.3034 |
0.371 |
|
| 2015 |
McGill LM, Shannon AJ, Pisani D, Félix MA, Ramløv H, Dix I, Wharton DA, Burnell AM. Anhydrobiosis and freezing-tolerance: adaptations that facilitate the establishment of Panagrolaimus nematodes in polar habitats. Plos One. 10: e0116084. PMID 25747673 DOI: 10.1371/Journal.Pone.0116084 |
0.303 |
|
| 2015 |
Siu-Ting K, Pisani D, Creevey CJ, Wilkinson M. Concatabominations: identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction. Systematic Biology. 64: 137-43. PMID 25183706 DOI: 10.1093/Sysbio/Syu066 |
0.794 |
|
| 2015 |
Pisani D, Pett W, Dohrmann M, Feuda R, Rota-Stabelli O, Philippe H, Lartillot N, Wörheide G. Genomic data do not support comb jellies as the sister group to all other animals Proceedings of the National Academy of Sciences of the United States of America. 112: 15402-15407. DOI: 10.1073/pnas.1518127112/-/DCSupplemental |
0.814 |
|
| 2014 |
Feuda R, Rota-Stabelli O, Oakley TH, Pisani D. The comb jelly opsins and the origins of animal phototransduction. Genome Biology and Evolution. 6: 1964-71. PMID 25062921 DOI: 10.1093/Gbe/Evu154 |
0.817 |
|
| 2014 |
Akanni WA, Creevey CJ, Wilkinson M, Pisani D. L.U.St: a tool for approximated maximum likelihood supertree reconstruction. Bmc Bioinformatics. 15: 183. PMID 24925766 DOI: 10.1186/1471-2105-15-183 |
0.806 |
|
| 2014 |
McInerney JO, O'Connell MJ, Pisani D. The hybrid nature of the Eukaryota and a consilient view of life on Earth. Nature Reviews. Microbiology. 12: 449-55. PMID 24814066 DOI: 10.1038/Nrmicro3271 |
0.709 |
|
| 2014 |
Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ. Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles. Evolution & Development. 16: 189-96. PMID 24798503 DOI: 10.1111/Ede.12081 |
0.667 |
|
| 2014 |
Siu-Ting K, Gower DJ, Pisani D, Kassahun R, Gebresenbet F, Menegon M, Mengistu AA, Saber SA, de Sá R, Wilkinson M, Loader SP. Evolutionary relationships of the critically endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses. Bmc Evolutionary Biology. 14: 44. PMID 24612655 DOI: 10.1186/1471-2148-14-44 |
0.83 |
|
| 2014 |
Holton TA, Wilkinson M, Pisani D. The shape of modern tree reconstruction methods. Systematic Biology. 63: 436-41. PMID 24352715 DOI: 10.1093/Sysbio/Syt103 |
0.713 |
|
| 2014 |
Haggerty LS, Jachiet PA, Hanage WP, Fitzpatrick DA, Lopez P, O'Connell MJ, Pisani D, Wilkinson M, Bapteste E, McInerney JO. A pluralistic account of homology: adapting the models to the data. Molecular Biology and Evolution. 31: 501-16. PMID 24273322 DOI: 10.1093/Molbev/Mst228 |
0.816 |
|
| 2013 |
Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ. miRNAs: small genes with big potential in metazoan phylogenetics. Molecular Biology and Evolution. 30: 2369-82. PMID 23913097 DOI: 10.1093/Molbev/Mst133 |
0.531 |
|
| 2013 |
Morgan CC, Foster PG, Webb AE, Pisani D, McInerney JO, O'Connell MJ. Heterogeneous models place the root of the placental mammal phylogeny. Molecular Biology and Evolution. 30: 2145-56. PMID 23813979 DOI: 10.1093/Molbev/Mst117 |
0.734 |
|
| 2013 |
Ometto L, Cestaro A, Ramasamy S, Grassi A, Revadi S, Siozios S, Moretto M, Fontana P, Varotto C, Pisani D, Dekker T, Wrobel N, Viola R, Pertot I, Cavalieri D, et al. Linking genomics and ecology to investigate the complex evolution of an invasive Drosophila pest. Genome Biology and Evolution. 5: 745-57. PMID 23501831 DOI: 10.1093/Gbe/Evt034 |
0.821 |
|
| 2013 |
Rota-Stabelli O, Daley AC, Pisani D. Molecular timetrees reveal a Cambrian colonization of land and a new scenario for ecdysozoan evolution. Current Biology : Cb. 23: 392-8. PMID 23375891 DOI: 10.1016/J.Cub.2013.01.026 |
0.706 |
|
| 2013 |
Hill MS, Hill AL, Lopez J, Peterson KJ, Pomponi S, Diaz MC, Thacker RW, Adamska M, Boury-Esnault N, Cárdenas P, Chaves-Fonnegra A, Danka E, De Laine BO, Formica D, Hajdu E, ... ... Pisani D, et al. Reconstruction of family-level phylogenetic relationships within Demospongiae (Porifera) using nuclear encoded housekeeping genes. Plos One. 8: e50437. PMID 23372644 DOI: 10.1371/Journal.Pone.0050437 |
0.358 |
|
| 2013 |
Rota-Stabelli O, Lartillot N, Philippe H, Pisani D. Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study. Systematic Biology. 62: 121-33. PMID 22962005 DOI: 10.1093/Sysbio/Sys077 |
0.663 |
|
| 2013 |
Pisani D, Carton R, Campbell LI, Akanni WA, Mulville E, Rota-Stabelli O. An overview of arthropod genomics, mitogenomics, and the evolutionary origins of the arthropod proteome Arthropod Biology and Evolution: Molecules, Development, Morphology. 41-61. DOI: 10.1007/978-3-642-36160-9_3 |
0.808 |
|
| 2012 |
Feuda R, Hamilton SC, McInerney JO, Pisani D. Metazoan opsin evolution reveals a simple route to animal vision. Proceedings of the National Academy of Sciences of the United States of America. 109: 18868-72. PMID 23112152 DOI: 10.1073/Pnas.1204609109 |
0.787 |
|
| 2012 |
Pisani D, Feuda R, Peterson KJ, Smith AB. Resolving phylogenetic signal from noise when divergence is rapid: a new look at the old problem of echinoderm class relationships. Molecular Phylogenetics and Evolution. 62: 27-34. PMID 21945533 DOI: 10.1016/J.Ympev.2011.08.028 |
0.821 |
|
| 2011 |
Erwin DH, Laflamme M, Tweedt SM, Sperling EA, Pisani D, Peterson KJ. The Cambrian conundrum: early divergence and later ecological success in the early history of animals. Science (New York, N.Y.). 334: 1091-7. PMID 22116879 DOI: 10.1126/Science.1206375 |
0.393 |
|
| 2011 |
Campbell LI, Rota-Stabelli O, Edgecombe GD, Marchioro T, Longhorn SJ, Telford MJ, Philippe H, Rebecchi L, Peterson KJ, Pisani D. MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda. Proceedings of the National Academy of Sciences of the United States of America. 108: 15920-4. PMID 21896763 DOI: 10.1073/Pnas.1105499108 |
0.795 |
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| 2011 |
McInerney JO, Pisani D, Bapteste E, O'Connell MJ. The Public Goods Hypothesis for the evolution of life on Earth. Biology Direct. 6: 41. PMID 21861918 DOI: 10.1186/1745-6150-6-41 |
0.733 |
|
| 2011 |
Sperling EA, Pisani D, Peterson KJ. Molecular paleobiological insights into the origin of the Brachiopoda. Evolution & Development. 13: 290-303. PMID 21535467 DOI: 10.1111/J.1525-142X.2011.00480.X |
0.474 |
|
| 2011 |
Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ. A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata. Proceedings. Biological Sciences / the Royal Society. 278: 298-306. PMID 20702459 DOI: 10.1098/Rspb.2010.0590 |
0.828 |
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| 2011 |
Anderson BM, Pisani D, Miller AI, Peterson KJ. The environmental affinities of marine higher taxa and possible biases in their first appearances in the fossil record Geology. 39: 971-974. DOI: 10.1130/G32413.1 |
0.402 |
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| 2010 |
Mohun SM, Davies WL, Bowmaker JK, Pisani D, Himstedt W, Gower DJ, Hunt DM, Wilkinson M. Identification and characterization of visual pigments in caecilians (Amphibia: Gymnophiona), an order of limbless vertebrates with rudimentary eyes. The Journal of Experimental Biology. 213: 3586-92. PMID 20889838 DOI: 10.1242/Jeb.045914 |
0.552 |
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| 2010 |
Rota-Stabelli O, Kayal E, Gleeson D, Daub J, Boore JL, Telford MJ, Pisani D, Blaxter M, Lavrov DV. Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda. Genome Biology and Evolution. 2: 425-40. PMID 20624745 DOI: 10.1093/Gbe/Evq030 |
0.805 |
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| 2010 |
Holton TA, Pisani D. Deep genomic-scale analyses of the metazoa reject Coelomata: evidence from single- and multigene families analyzed under a supertree and supermatrix paradigm. Genome Biology and Evolution. 2: 310-24. PMID 20624736 DOI: 10.1093/Gbe/Evq016 |
0.753 |
|
| 2010 |
Sperling EA, Robinson JM, Pisani D, Peterson KJ. Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules. Geobiology. 8: 24-36. PMID 19929965 DOI: 10.1111/J.1472-4669.2009.00225.X |
0.45 |
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| 2009 |
Sperling EA, Peterson KJ, Pisani D. Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Molecular Biology and Evolution. 26: 2261-74. PMID 19597161 DOI: 10.1093/Molbev/Msp148 |
0.519 |
|
| 2009 |
Pisani D. Deconstructing the tree of life Trends in Ecology and Evolution. 24: 184-185. DOI: 10.1016/J.Tree.2008.10.012 |
0.408 |
|
| 2008 |
Lloyd GT, Davis KE, Pisani D, Tarver JE, Ruta M, Sakamoto M, Hone DW, Jennings R, Benton MJ. Dinosaurs and the Cretaceous Terrestrial Revolution. Proceedings. Biological Sciences / the Royal Society. 275: 2483-90. PMID 18647715 DOI: 10.1098/Rspb.2008.0715 |
0.577 |
|
| 2008 |
McInerney JO, Cotton JA, Pisani D. The prokaryotic tree of life: past, present... and future? Trends in Ecology & Evolution. 23: 276-81. PMID 18367290 DOI: 10.1016/J.Tree.2008.01.008 |
0.755 |
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| 2008 |
Peterson KJ, Cotton JA, Gehling JG, Pisani D. The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 1435-43. PMID 18192191 DOI: 10.1098/Rstb.2007.2233 |
0.572 |
|
| 2007 |
McInerney JO, Pisani D. Genetics. Paradigm for life. Science (New York, N.Y.). 318: 1390-1. PMID 18048672 DOI: 10.1126/Science.1151657 |
0.612 |
|
| 2007 |
Ruta M, Pisani D, Lloyd GT, Benton MJ. A supertree of temnospondyli: cladogenetic patterns in the most species-rich group of early tetrapods. Proceedings. Biological Sciences / the Royal Society. 274: 3087-95. PMID 17925278 DOI: 10.1098/Rspb.2007.1250 |
0.56 |
|
| 2007 |
Pisani D, Benton MJ, Wilkinson M. Congruence of morphological and molecular phylogenies. Acta Biotheoretica. 55: 269-81. PMID 17657570 DOI: 10.1007/S10441-007-9015-8 |
0.679 |
|
| 2007 |
Loader SP, Pisani D, Cotton JA, Gower DJ, Day JJ, Wilkinson M. Relative time scales reveal multiple origins of parallel disjunct distributions of African caecilian amphibians. Biology Letters. 3: 505-8. PMID 17609171 DOI: 10.1098/Rsbl.2007.0266 |
0.77 |
|
| 2007 |
Pisani D, Cotton JA, McInerney JO. Supertrees disentangle the chimerical origin of eukaryotic genomes. Molecular Biology and Evolution. 24: 1752-60. PMID 17504772 DOI: 10.1093/Molbev/Msm095 |
0.745 |
|
| 2007 |
Wilkinson M, Cotton JA, Lapointe FJ, Pisani D. Properties of supertree methods in the consensus setting. Systematic Biology. 56: 330-7. PMID 17464887 DOI: 10.1080/10635150701245370 |
0.674 |
|
| 2007 |
Harris SR, Pisani D, Gower DJ, Wilkinson M. Investigating stagnation in morphological phylogenetics using consensus data. Systematic Biology. 56: 125-9. PMID 17366142 DOI: 10.1080/10635150601115624 |
0.63 |
|
| 2007 |
Sperling EA, Pisani D, Peterson KJ. Poriferan paraphyly and its implications for Precambrian palaeobiology Geological Society Special Publication. 286: 355-368. DOI: 10.1144/Sp286.25 |
0.411 |
|
| 2006 |
Smith AB, Pisani D, Mackenzie-Dodds JA, Stockley B, Webster BL, Littlewood DT. Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata). Molecular Biology and Evolution. 23: 1832-51. PMID 16777927 DOI: 10.1093/Molbev/Msl039 |
0.419 |
|
| 2006 |
Pisani D, Mohun SM, Harris SR, McInerney JO, Wilkinson M. Molecular evidence for dim-light vision in the last common ancestor of the vertebrates. Current Biology : Cb. 16: R318-9; author reply. PMID 16682336 DOI: 10.1016/J.Cub.2006.03.090 |
0.694 |
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| 2005 |
Wilkinson M, Pisani D, Cotton JA, Corfe I. Measuring support and finding unsupported relationships in supertrees. Systematic Biology. 54: 823-31. PMID 16243766 DOI: 10.1080/10635150590950362 |
0.655 |
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| 2005 |
Wilkinson M, Cotton JA, Creevey C, Eulenstein O, Harris SR, Lapointe FJ, Levasseur C, McInerney JO, Pisani D, Thorley JL. The shape of supertrees to come: tree shape related properties of fourteen supertree methods. Systematic Biology. 54: 419-31. PMID 16012108 DOI: 10.1080/10635150590949832 |
0.799 |
|
| 2005 |
Hone DW, Keesey TM, Pisani D, Purvis A. Macroevolutionary trends in the Dinosauria: Cope's rule. Journal of Evolutionary Biology. 18: 587-95. PMID 15842488 DOI: 10.1111/J.1420-9101.2004.00870.X |
0.38 |
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| 2004 |
Pisani D. Identifying and removing fast-evolving sites using compatibility analysis: an example from the Arthropoda. Systematic Biology. 53: 978-89. PMID 15764565 DOI: 10.1080/10635150490888877 |
0.392 |
|
| 2004 |
Pisani D, Poling LL, Lyons-Weiler M, Hedges SB. The colonization of land by animals: molecular phylogeny and divergence times among arthropods. Bmc Biology. 2: 1. PMID 14731304 DOI: 10.1186/1741-7007-2-1 |
0.474 |
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| 2002 |
Pisani D, Yates AM, Langer MC, Benton MJ. A genus-level supertree of the Dinosauria. Proceedings. Biological Sciences / the Royal Society. 269: 915-21. PMID 12028774 DOI: 10.1098/Rspb.2001.1942 |
0.536 |
|
| 2002 |
Pisani D, Wilkinson M. Matrix representation with parsimony, taxonomic congruence, and total evidence. Systematic Biology. 51: 151-5. PMID 11943097 DOI: 10.1080/106351502753475925 |
0.616 |
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