Fedor V. Karginov, Ph.D. - Publications

Affiliations: 
2005 University of Colorado, Boulder, Boulder, CO, United States 
Area:
Biochemistry

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sternburg EL, Karginov FV. Global Approaches in Studying RNA-Binding Protein Interaction Networks. Trends in Biochemical Sciences. 45: 593-603. PMID 32531229 DOI: 10.1016/j.tibs.2020.03.005  0.547
2018 Sternburg EL, Estep JA, Nguyen DK, Li Y, Karginov FV. Antagonistic and cooperative AGO2-PUM interactions in regulating mRNAs. Scientific Reports. 8: 15316. PMID 30333515 DOI: 10.1038/s41598-018-33596-4  0.399
2016 Li Y, Basavappa M, Lu J, Dong S, Cronkite DA, Prior JT, Reinecker HC, Hertzog P, Han Y, Li WX, Cheloufi S, Karginov FV, Ding SW, Jeffrey KL. Induction and suppression of antiviral RNA interference by influenza A virus in mammalian cells. Nature Microbiology. 2: 16250. PMID 27918527 DOI: 10.1038/nmicrobiol.2016.250  0.458
2016 Kudla M, Karginov FV. Measuring mRNA Translation by Polysome Profiling. Methods in Molecular Biology (Clifton, N.J.). 1421: 127-35. PMID 26965262 DOI: 10.1007/978-1-4939-3591-8_11  0.344
2013 Karginov FV, Hannon GJ. Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates Genes and Development. 27: 1624-1632. PMID 23824327 DOI: 10.1101/Gad.215939.113  0.337
2012 Uren PJ, Bahrami-Samani E, Burns SC, Qiao M, Karginov FV, Hodges E, Hannon GJ, Sanford JR, Penalva LO, Smith AD. Site identification in high-throughput RNA-protein interaction data. Bioinformatics (Oxford, England). 28: 3013-20. PMID 23024010 DOI: 10.1093/Bioinformatics/Bts569  0.553
2012 Roca X, Karginov FV. RNA biology in a test tube--an overview of in vitro systems/assays. Wiley Interdisciplinary Reviews. Rna. 3: 509-27. PMID 22447682 DOI: 10.1002/wrna.1115  0.506
2010 Karginov FV, Cheloufi S, Chong MM, Stark A, Smith AD, Hannon GJ. Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases. Molecular Cell. 38: 781-8. PMID 20620951 DOI: 10.1016/J.Molcel.2010.06.001  0.395
2010 Karginov FV, Hannon GJ. The CRISPR system: small RNA-guided defense in bacteria and archaea. Molecular Cell. 37: 7-19. PMID 20129051 DOI: 10.1016/J.Molcel.2009.12.033  0.423
2009 Rechavi O, Erlich Y, Amram H, Flomenblit L, Karginov FV, Goldstein I, Hannon GJ, Kloog Y. Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs. Genes & Development. 23: 1971-9. PMID 19684116 DOI: 10.1101/Gad.1789609  0.38
2006 Wang S, Hu Y, Overgaard MT, Karginov FV, Uhlenbeck OC, McKay DB. The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold. Rna (New York, N.Y.). 12: 959-67. PMID 16611943 DOI: 10.1261/Rna.5906  0.726
2005 Karginov FV, Caruthers JM, Hu Y, McKay DB, Uhlenbeck OC. YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain. The Journal of Biological Chemistry. 280: 35499-505. PMID 16118224 DOI: 10.1074/Jbc.M506815200  0.744
2004 Karginov FV, Uhlenbeck OC. Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme. Nucleic Acids Research. 32: 3028-32. PMID 15173385 DOI: 10.1093/Nar/Gkh640  0.696
2002 Kossen K, Karginov FV, Uhlenbeck OC. The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA. Journal of Molecular Biology. 324: 625-36. PMID 12460566 DOI: 10.1016/S0022-2836(02)01140-3  0.437
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