| Year |
Citation |
Score |
| 2020 |
Rao S, Klesse G, Tucker SJ, Sansom MS. Annotating Ion Channel Pores: Structures, Hydrophobicity and the Threshold for Permeation Biophysical Journal. 118: 272a. DOI: 10.1016/J.Bpj.2019.11.1565 |
0.461 |
|
| 2019 |
Wang Q, Hedger G, Aryal P, Grieben M, Pike AC, Shi J, Carpenter EP, Sansom MS. Understanding Protein-Lipid Interactions of TRP Channels of the Polycystin Family, through MD Simulations and Structural Studies Biophysical Journal. 116: 534a-535a. DOI: 10.1016/J.Bpj.2018.11.2877 |
0.597 |
|
| 2019 |
Rao S, Klesse G, Stansfeld PJ, Tucker SJ, Sansom MS. Functional Annotation of Ion Channel Structures: Predicting Pore Solvation States Based on Local Radius and Hydrophobicity Biophysical Journal. 116: 241a. DOI: 10.1016/J.Bpj.2018.11.1321 |
0.461 |
|
| 2018 |
Jojoa Cruz S, Saotome K, Murthy SE, Tsui CCA, Sansom MS, Patapoutian A, Ward AB. Cryo-EM structure of the mechanically activated ion channel OSCA1.2. Elife. 7. PMID 30382939 DOI: 10.7554/eLife.41845 |
0.318 |
|
| 2018 |
Rao S, Klesse G, Tucker SJ, Sansom MS. Hydrophobic Gating: Examination of Recent Ion Channel Structures Biophysical Journal. 114: 134a. DOI: 10.1016/J.Bpj.2017.11.762 |
0.461 |
|
| 2018 |
Klesse G, Rao S, Stansfeld PJ, Sansom MS, Tucker SJ. A Newly Available Tool for Functional Annotation of Ion Channel Structures Based on Molecular Dynamics Simulations Biophysical Journal. 114: 134a. DOI: 10.1016/J.Bpj.2017.11.761 |
0.461 |
|
| 2018 |
Wang Q, Hedger G, Aryal P, Shi J, Carpenter EP, Sansom MS. A PIP2 Binding Site on a Human TRP Channel: Simulation Studies of PKD2 Biophysical Journal. 114: 397a. DOI: 10.1016/J.Bpj.2017.11.2196 |
0.597 |
|
| 2017 |
Aryal P, Jarerattanachat V, Clausen MV, Schewe M, McClenaghan C, Argent L, Conrad LJ, Dong YY, Pike AC, Carpenter EP, Baukrowitz T, Sansom MS, Tucker SJ. Bilayer-Mediated Structural Transitions Control Mechanosensitivity of the TREK-2 K2P Channel. Structure (London, England : 1993). PMID 28392258 DOI: 10.1016/J.Str.2017.03.006 |
0.767 |
|
| 2017 |
Rao S, Klesse G, Stansfeld PJ, Tucker SJ, Sansom MS. A BEST Example of Channel Structure Annotation by Molecular Simulation. Channels (Austin, Tex.). 0. PMID 28319451 DOI: 10.1080/19336950.2017.1306163 |
0.615 |
|
| 2017 |
Jarerattanachat V, Clausen MV, Aryal P, Carpenter EP, Sansom MS, Tucker SJ. Structural and Functional Response of a Mechanosensitive K2P K + Channel to Asymmetric Membrane Tension Biophysical Journal. 112: 545a. DOI: 10.1016/J.Bpj.2016.11.2945 |
0.686 |
|
| 2017 |
Duncan AL, Koldsø H, Reddy TJ, Hélie J, Sansom MS. Membrane Crowding and Complexity: Interplay between Protein-Lipid Interactions, Clustering and Diffusion Biophysical Journal. 112: 320a. DOI: 10.1016/J.Bpj.2016.11.1732 |
0.318 |
|
| 2016 |
Trick JL, Chelvaniththilan S, Klesse G, Aryal P, Wallace EJ, Tucker SJ, Sansom MS. Functional Annotation of Ion Channel Structures by Molecular Simulation. Structure (London, England : 1993). PMID 27866853 DOI: 10.1016/J.Str.2016.10.005 |
0.751 |
|
| 2016 |
Chavent M, Duncan AL, Sansom MS. Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale. Current Opinion in Structural Biology. 40: 8-16. PMID 27341016 DOI: 10.1016/j.sbi.2016.06.007 |
0.301 |
|
| 2016 |
Hedger G, Sansom MS. Lipid interaction sites on channels, transporters and receptors: Recent insights from molecular dynamics simulations. Biochimica Et Biophysica Acta. 1858: 2390-400. PMID 26946244 DOI: 10.1016/J.Bbamem.2016.02.037 |
0.304 |
|
| 2016 |
Duncan AL, Koldsø H, Reddy T, Helie J, Sansom MS. Lipid Composition Modulates Membrane Protein Clustering Biophysical Journal. 110: 81a. DOI: 10.1016/J.Bpj.2015.11.499 |
0.314 |
|
| 2016 |
Aryal P, Jarerattanachat V, Tucker SJ, Sansom MS. Bilayer-Mediated Structural Transitions in the TREK-2 Mechanosensitive K2P Channel Biophysical Journal. 110: 348a. DOI: 10.1016/J.Bpj.2015.11.1874 |
0.756 |
|
| 2015 |
Pliotas C, Dahl AC, Rasmussen T, Mahendran KR, Smith TK, Marius P, Gault J, Banda T, Rasmussen A, Miller S, Robinson CV, Bayley H, Sansom MS, Booth IR, Naismith JH. The role of lipids in mechanosensation. Nature Structural & Molecular Biology. PMID 26551077 DOI: 10.1038/Nsmb.3120 |
0.301 |
|
| 2015 |
Beale JH, Parker JL, Samsudin F, Barrett AL, Senan A, Bird LE, Scott D, Owens RJ, Sansom MS, Tucker SJ, Meredith D, Fowler PW, Newstead S. Crystal Structures of the Extracellular Domain from PepT1 and PepT2 Provide Novel Insights into Mammalian Peptide Transport. Structure (London, England : 1993). 23: 1889-99. PMID 26320580 DOI: 10.1016/J.Str.2015.07.016 |
0.544 |
|
| 2015 |
Stansfeld PJ, Goose JE, Caffrey M, Carpenter EP, Parker JL, Newstead S, Sansom MS. MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes. Structure (London, England : 1993). 23: 1350-61. PMID 26073602 DOI: 10.1016/J.Str.2015.05.006 |
0.309 |
|
| 2015 |
Trick JL, Aryal P, Tucker SJ, Sansom MS. Molecular simulation studies of hydrophobic gating in nanopores and ion channels. Biochemical Society Transactions. 43: 146-50. PMID 25849908 DOI: 10.1042/Bst20140256 |
0.749 |
|
| 2015 |
Dong YY, Pike AC, Mackenzie A, McClenaghan C, Aryal P, Dong L, Quigley A, Grieben M, Goubin S, Mukhopadhyay S, Ruda GF, Clausen MV, Cao L, Brennan PE, Burgess-Brown NA, ... Sansom MS, et al. K2P channel gating mechanisms revealed by structures of TREK-2 and a complex with Prozac. Science (New York, N.Y.). 347: 1256-9. PMID 25766236 DOI: 10.1126/Science.1261512 |
0.737 |
|
| 2015 |
Kalli AC, Sansom MS, Reithmeier RA. Molecular dynamics simulations of the bacterial UraA H+-uracil symporter in lipid bilayers reveal a closed state and a selective interaction with cardiolipin. Plos Computational Biology. 11: e1004123. PMID 25729859 DOI: 10.1371/Journal.Pcbi.1004123 |
0.3 |
|
| 2015 |
Aryal P, Abd-Wahab F, Bucci G, Sansom MS, Tucker SJ. Influence of lipids on the hydrophobic barrier within the pore of the TWIK-1 K2P channel. Channels (Austin, Tex.). 9: 44-9. PMID 25487004 DOI: 10.4161/19336950.2014.981987 |
0.754 |
|
| 2015 |
Rouse SL, Sansom MS. Interactions of lipids and detergents with a viral ion channel protein: molecular dynamics simulation studies. The Journal of Physical Chemistry. B. 119: 764-72. PMID 25286030 DOI: 10.1021/Jp505127Y |
0.305 |
|
| 2015 |
Aryal P, Sansom MS, Tucker SJ. Hydrophobic gating in ion channels. Journal of Molecular Biology. 427: 121-30. PMID 25106689 DOI: 10.1016/J.Jmb.2014.07.030 |
0.74 |
|
| 2015 |
Duncan AL, Koldsø H, Sansom MS. Clustering of Inward Rectifier Potassium Channels in a PIP2-Containing Membrane: A Molecular Dynamics Simulation Study Biophysical Journal. 108: 129a. DOI: 10.1016/J.Bpj.2014.11.720 |
0.302 |
|
| 2015 |
Aryal P, Tucker SJ, Sansom MS. Understanding the Dynamics of K2P Channels in Complex Lipid Bilayers Biophysical Journal. 108: 436a-437a. DOI: 10.1016/J.Bpj.2014.11.2384 |
0.757 |
|
| 2014 |
Fowler PW, Bollepalli MK, Rapedius M, Nematian-Ardestani E, Shang L, Sansom MS, Tucker SJ, Baukrowitz T. Insights into the structural nature of the transition state in the Kir channel gating pathway. Channels (Austin, Tex.). 8: 551-5. PMID 25483285 DOI: 10.4161/19336950.2014.962371 |
0.528 |
|
| 2014 |
Aryal P, Abd-Wahab F, Bucci G, Sansom MS, Tucker SJ. A hydrophobic barrier deep within the inner pore of the TWIK-1 K2P potassium channel. Nature Communications. 5: 4377. PMID 25001086 DOI: 10.1038/Ncomms5377 |
0.75 |
|
| 2014 |
Bollepalli MK, Fowler PW, Rapedius M, Shang L, Sansom MS, Tucker SJ, Baukrowitz T. State-dependent network connectivity determines gating in a K+ channel. Structure (London, England : 1993). 22: 1037-46. PMID 24980796 DOI: 10.1016/J.Str.2014.04.018 |
0.561 |
|
| 2014 |
Zubcevic L, Bavro VN, Muniz JR, Schmidt MR, Wang S, De Zorzi R, Venien-Bryan C, Sansom MS, Nichols CG, Tucker SJ. Control of KirBac3.1 potassium channel gating at the interface between cytoplasmic domains. The Journal of Biological Chemistry. 289: 143-51. PMID 24257749 DOI: 10.1074/Jbc.M113.501833 |
0.552 |
|
| 2014 |
Stansfeld PJ, Sansom MS. MemProtMD: Membrane Protein Structures and Simulations Biophysical Journal. 106: 634a. DOI: 10.1016/J.Bpj.2013.11.3509 |
0.308 |
|
| 2014 |
Song C, de Groot BL, Sansom MS. Membrane-Dependent Activity of the Dermcidin Channel Biophysical Journal. 106: 297a. DOI: 10.1016/J.Bpj.2013.11.1728 |
0.326 |
|
| 2013 |
Fowler PW, Sansom MS. The pore of voltage-gated potassium ion channels is strained when closed. Nature Communications. 4: 1872. PMID 23695666 DOI: 10.1038/Ncomms2858 |
0.306 |
|
| 2013 |
Schmidt MR, Stansfeld PJ, Tucker SJ, Sansom MS. Simulation-based prediction of phosphatidylinositol 4,5-bisphosphate binding to an ion channel. Biochemistry. 52: 279-81. PMID 23270460 DOI: 10.1021/Bi301350S |
0.581 |
|
| 2013 |
Schmidt MR, Aryal P, Tucker SJ, Sansom MS. K2P and Kir K+ Channels in Physiological Bilayers Biophysical Journal. 104: 132a. DOI: 10.1016/J.Bpj.2012.11.754 |
0.763 |
|
| 2013 |
Hanson SM, Swartz KJ, Newstead S, Sansom MS. Molecular Dynamics Studies of Lipophilic Small Molecule TRPV1 Ligands in Lipid Bilayers Biophysical Journal. 104: 456a. DOI: 10.1016/J.Bpj.2012.11.2523 |
0.314 |
|
| 2013 |
Rouse S, Sansom MS. From the Micelle to the Membrane: Molecular Dynamics Simulations of Solution NMR Structures of Membrane Proteins Biophysical Journal. 104: 408a. DOI: 10.1016/J.Bpj.2012.11.2275 |
0.325 |
|
| 2013 |
Stansfeld PJ, Koldsø H, Jefferys EE, Goose JE, Sansom MS. Memprotmd: Restoring Membrane Protein Structures to their Bilayer Environments Biophysical Journal. 104: 384a. DOI: 10.1016/J.Bpj.2012.11.2141 |
0.304 |
|
| 2012 |
Rapedius M, Schmidt MR, Sharma C, Stansfeld PJ, Sansom MS, Baukrowitz T, Tucker SJ. State-independent intracellular access of quaternary ammonium blockers to the pore of TREK-1. Channels (Austin, Tex.). 6: 473-8. PMID 22991046 DOI: 10.4161/Chan.22153 |
0.554 |
|
| 2012 |
Andres-Enguix I, Shang L, Stansfeld PJ, Morahan JM, Sansom MS, Lafrenière RG, Roy B, Griffiths LR, Rouleau GA, Ebers GC, Cader ZM, Tucker SJ. Functional analysis of missense variants in the TRESK (KCNK18) K channel. Scientific Reports. 2: 237. PMID 22355750 DOI: 10.1038/Srep00237 |
0.506 |
|
| 2012 |
Bavro VN, De Zorzi R, Schmidt MR, Muniz JR, Zubcevic L, Sansom MS, Vénien-Bryan C, Tucker SJ. Structure of a KirBac potassium channel with an open bundle crossing indicates a mechanism of channel gating. Nature Structural & Molecular Biology. 19: 158-63. PMID 22231399 DOI: 10.1038/Nsmb.2208 |
0.558 |
|
| 2012 |
Rapedius M, Piechotta PL, Stansfeld PJ, Bollepalli MK, Ehrlich G, Andres-Enguix I, Fritzenschaft H, Decher N, Sansom MS, Tucker SJ, Baukrowitz T. Structural and Mechanistic Insights into Gating of K2P Channels Biophysical Journal. 102: 121a. DOI: 10.1016/J.Bpj.2011.11.678 |
0.569 |
|
| 2012 |
Dahl ACE, Chavent M, Sansom MS. Analysing Helix Flexibility in Membrane Proteins using Bendix Biophysical Journal. 102: 53a. DOI: 10.1016/J.Bpj.2011.11.319 |
0.315 |
|
| 2012 |
Bavro VN, De Zorzi R, Schmidt MR, Muniz JR, Zubcevic L, Sansom MS, Venien-Bryan C, Tucker SJ. Crystal Structure of a Prokaryotic Kir Channel in an Open Conformation Biophysical Journal. 102: 536a. DOI: 10.1016/J.Bpj.2011.11.2928 |
0.55 |
|
| 2012 |
Chohan P, Khalid S, Sansom M. Simulation Studies of Transport of Hydrophobic Compounds through Outer Membrane Proteins of Gram Negative Bacteria Biophysical Journal. 102: 430a-431a. DOI: 10.1016/J.Bpj.2011.11.2358 |
0.31 |
|
| 2011 |
Piechotta PL, Rapedius M, Stansfeld PJ, Bollepalli MK, Ehrlich G, Erhlich G, Andres-Enguix I, Fritzenschaft H, Decher N, Sansom MS, Tucker SJ, Baukrowitz T. The pore structure and gating mechanism of K2P channels. The Embo Journal. 30: 3607-19. PMID 21822218 DOI: 10.1038/Emboj.2011.268 |
0.566 |
|
| 2011 |
Schmidt MR, Stansfeld PJ, Rapedius M, Baukrowitz T, Tucker SJ, Sansom MS. PIP2-Binding to an Open State Model of Kir1.1 Probed by Multiscale Biomolecular Simulations Biophysical Journal. 100: 431a. DOI: 10.1016/J.Bpj.2010.12.2547 |
0.593 |
|
| 2011 |
Stansfeld PJ, Sansom MS. Biomolecular Simulations of Kir Channel Gating and Membrane Phospholipid Interactions Biophysical Journal. 100: 431a. DOI: 10.1016/J.Bpj.2010.12.2546 |
0.347 |
|
| 2011 |
Rouse SL, Sansom MS. Molecular Dynamics Simulations of the BM2 Proton Channel: Interactions with Lipids and Detergents Biophysical Journal. 100: 346a. DOI: 10.1016/J.Bpj.2010.12.2089 |
0.354 |
|
| 2011 |
Andres-Enguix I, Shang L, Stansfeld P, Sansom MS, Cader MZ, Tucker SJ. Functional Analysis of Mutations in the TRESK K2P Potassium Channel Associated with ‘migraine with Aura’ Biophysical Journal. 100: 279a. DOI: 10.1016/J.Bpj.2010.12.1733 |
0.498 |
|
| 2011 |
Stansfeld PJ, Jefferys EE, Sansom MS. Multiscale Simulations of Lipid Interactions with Integral Membrane Proteins: Aquaporins Biophysical Journal. 100: 204a. DOI: 10.1016/J.Bpj.2010.12.1327 |
0.31 |
|
| 2010 |
Paynter JJ, Andres-Enguix I, Fowler PW, Tottey S, Cheng W, Enkvetchakul D, Bavro VN, Kusakabe Y, Sansom MS, Robinson NJ, Nichols CG, Tucker SJ. Functional complementation and genetic deletion studies of KirBac channels: activatory mutations highlight gating-sensitive domains. The Journal of Biological Chemistry. 285: 40754-61. PMID 20876570 DOI: 10.1074/Jbc.M110.175687 |
0.559 |
|
| 2010 |
Randa HS, Forrest LR, Voth GA, Sansom MS. Molecular dynamics of synthetic leucine-serine ion channels in a phospholipid membrane. Biophysical Journal. 77: 2400-10. PMID 10545343 DOI: 10.1016/S0006-3495(99)77077-3 |
0.536 |
|
| 2010 |
Stansfeld PJ, Hopkinson RJ, Ashcroft FM, Sansom MS. Investigating the PIP2 Binding Site in Kir Channels Via Multi-Scale Biomolecular Simulations Biophysical Journal. 98: 698a. DOI: 10.1016/J.Bpj.2009.12.3833 |
0.321 |
|
| 2010 |
Bollepalli MK, Fowler P, Rapedius M, Xie M, Shang L, Fritzenschaft H, Sansom M, Tucker SJ, Baukrowitz T. A Structural Model of a Kir Channel in the Open State Derived from Mutagenic Scanning of the Pore Gating Energetics Biophysical Journal. 98: 697a. DOI: 10.1016/J.Bpj.2009.12.3825 |
0.541 |
|
| 2010 |
Pongprayoon P, Beckstein O, Wee CL, Sansom M. Anion Translocation in a Brush-Like Nanopore: Simulations of the Outer Membrnae Protein OprP Biophysical Journal. 98: 51a. DOI: 10.1016/J.Bpj.2009.12.292 |
0.303 |
|
| 2010 |
Piechotta PL, Stansfeld PJ, Bollepalli MK, Rapedius M, Andres-Enguix I, Shang L, Fritzenschaft H, Sansom MS, Tucker S, Baukrowitz T. TREK Channel Pore Probed by Cysteine Scanning Mutagenesis and Structural Modelling Biophysical Journal. 98: 327a. DOI: 10.1016/J.Bpj.2009.12.1773 |
0.561 |
|
| 2009 |
Stansfeld PJ, Hopkinson R, Ashcroft FM, Sansom MS. PIP(2)-binding site in Kir channels: definition by multiscale biomolecular simulations. Biochemistry. 48: 10926-33. PMID 19839652 DOI: 10.1021/Bi9013193 |
0.335 |
|
| 2009 |
Mokrab Y, Sansom MS. Voltage Sensors: Diverse sequences but common bilayer interactions? Biophysical Journal. 96: 483a. DOI: 10.1016/J.Bpj.2008.12.2493 |
0.364 |
|
| 2009 |
Wee CL, Sansom MS. Interactions of the S4 Helix of a Kv Channel with a Lipid Bilayer: Free Energy Calculations via Coarse-Grained Molecular Dynamics Simulations Biophysical Journal. 96: 483a. DOI: 10.1016/J.Bpj.2008.12.2491 |
0.304 |
|
| 2009 |
Tai K, Sansom MS. Modelling and simulations of the inward-rectifying potassium channel Kir2.1 Biophysical Journal. 96: 463a. DOI: 10.1016/J.Bpj.2008.12.2384 |
0.306 |
|
| 2009 |
Bollepalli MK, Rapedius M, Fowler P, Xie M, Shang L, Fritzenschaft H, Sansom MS, Tucker SJ, Baukrowitz T. Gating Sensitive Residues In The Pore Of An Inwardly Rectifying Potassium (Kir) Channel Biophysical Journal. 96: 462a. DOI: 10.1016/J.Bpj.2008.12.2378 |
0.546 |
|
| 2009 |
Mokrab Y, Sansom MS. Hv1: How A Voltage-sensor May Form A Channel Biophysical Journal. 96: 370a. DOI: 10.1016/J.Bpj.2008.12.1993 |
0.346 |
|
| 2008 |
Tai K, Fowler P, Mokrab Y, Stansfeld P, Sansom MS. Molecular modeling and simulation studies of ion channel structures, dynamics and mechanisms. Methods in Cell Biology. 90: 233-65. PMID 19195554 DOI: 10.1016/S0091-679X(08)00812-1 |
0.302 |
|
| 2008 |
Vaccaro L, Scott KA, Sansom MS. Gating at both ends and breathing in the middle: conformational dynamics of TolC. Biophysical Journal. 95: 5681-91. PMID 18835894 DOI: 10.1529/Biophysj.108.136028 |
0.301 |
|
| 2008 |
Sansom MS, Scott KA, Bond PJ. Coarse-grained simulation: a high-throughput computational approach to membrane proteins. Biochemical Society Transactions. 36: 27-32. PMID 18208379 DOI: 10.1042/Bst0360027 |
0.316 |
|
| 2007 |
Rapedius M, Paynter JJ, Fowler PW, Shang L, Sansom MS, Tucker SJ, Baukrowitz T. Control of pH and PIP2 gating in heteromeric Kir4.1/Kir5.1 channels by H-Bonding at the helix-bundle crossing. Channels (Austin, Tex.). 1: 327-30. PMID 18690035 DOI: 10.4161/Chan.5176 |
0.52 |
|
| 2007 |
Rapedius M, Fowler PW, Shang L, Sansom MS, Tucker SJ, Baukrowitz T. H bonding at the helix-bundle crossing controls gating in Kir potassium channels. Neuron. 55: 602-14. PMID 17698013 DOI: 10.1016/J.Neuron.2007.07.026 |
0.546 |
|
| 2007 |
Haider S, Khalid S, Tucker SJ, Ashcroft FM, Sansom MS. Molecular dynamics simulations of inwardly rectifying (Kir) potassium channels: a comparative study. Biochemistry. 46: 3643-52. PMID 17326663 DOI: 10.1021/Bi062210F |
0.611 |
|
| 2007 |
Ulmschneider MB, Ulmschneider JP, Sansom MS, Di Nola A. A generalized born implicit-membrane representation compared to experimental insertion free energies. Biophysical Journal. 92: 2338-49. PMID 17218457 DOI: 10.1529/Biophysj.106.081810 |
0.651 |
|
| 2007 |
Bond PJ, Derrick JP, Sansom MS. Membrane simulations of OpcA: gating in the loops? Biophysical Journal. 92: L23-5. PMID 17114231 DOI: 10.1529/Biophysj.106.097311 |
0.313 |
|
| 2006 |
Rapedius M, Haider S, Browne KF, Shang L, Sansom MS, Baukrowitz T, Tucker SJ. Structural and functional analysis of the putative pH sensor in the Kir1.1 (ROMK) potassium channel. Embo Reports. 7: 611-6. PMID 16641935 DOI: 10.1038/Sj.Embor.7400678 |
0.499 |
|
| 2006 |
Ulmschneider MB, Sansom MS, Di Nola A. Properties of integral membrane protein structures: derivation of an implicit membrane potential. Proteins. 59: 252-65. PMID 15723347 DOI: 10.1002/Prot.20334 |
0.589 |
|
| 2005 |
Ulmschneider MB, Sansom MS, Di Nola A. Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques. Biophysical Journal. 90: 1650-60. PMID 16339877 DOI: 10.1529/Biophysj.105.065367 |
0.589 |
|
| 2005 |
Grottesi A, Domene C, Hall B, Sansom MS. Conformational dynamics of M2 helices in KirBac channels: helix flexibility in relation to gating via molecular dynamics simulations. Biochemistry. 44: 14586-94. PMID 16262258 DOI: 10.1021/Bi0510429 |
0.319 |
|
| 2005 |
Ulmschneider MB, Tieleman DP, Sansom MS. The role of extra-membranous inter-helical loops in helix-helix interactions. Protein Engineering, Design & Selection : Peds. 18: 563-70. PMID 16251222 DOI: 10.1093/Protein/Gzi059 |
0.589 |
|
| 2004 |
Faraldo-Gómez JD, Forrest LR, Baaden M, Bond PJ, Domene C, Patargias G, Cuthbertson J, Sansom MS. Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations. Proteins. 57: 783-91. PMID 15317024 DOI: 10.1002/Prot.20257 |
0.623 |
|
| 2003 |
Domene C, Bond PJ, Sansom MS. Membrane protein simulations: ion channels and bacterial outer membrane proteins. Advances in Protein Chemistry. 66: 159-93. PMID 14631819 DOI: 10.1016/S0065-3233(03)66005-5 |
0.338 |
|
| 2003 |
Beckstein O, Biggin PC, Bond P, Bright JN, Domene C, Grottesi A, Holyoake J, Sansom MS. Ion channel gating: insights via molecular simulations. Febs Letters. 555: 85-90. PMID 14630324 DOI: 10.1016/S0014-5793(03)01151-7 |
0.324 |
|
| 2003 |
Arinaminpathy Y, Biggin PC, Shrivastava IH, Sansom MS. A prokaryotic glutamate receptor: homology modelling and molecular dynamics simulations of GluR0. Febs Letters. 553: 321-7. PMID 14572644 DOI: 10.1016/S0014-5793(03)01036-6 |
0.31 |
|
| 2003 |
Faraldo-Gómez JD, Smith GR, Sansom MS. Molecular dynamics simulations of the bacterial outer membrane protein FhuA: a comparative study of the ferrichrome-free and bound states. Biophysical Journal. 85: 1406-20. PMID 12944258 DOI: 10.1016/S0006-3495(03)74573-1 |
0.304 |
|
| 2001 |
Cordes FS, Kukol A, Forrest LR, Arkin IT, Sansom MS, Fischer WB. The structure of the HIV-1 Vpu ion channel: modelling and simulation studies. Biochimica Et Biophysica Acta. 1512: 291-8. PMID 11406106 DOI: 10.1016/S0005-2736(01)00332-7 |
0.536 |
|
| 2001 |
Ulmschneider MB, Sansom MS. Amino acid distributions in integral membrane protein structures. Biochimica Et Biophysica Acta. 1512: 1-14. PMID 11334619 DOI: 10.1016/S0005-2736(01)00299-1 |
0.589 |
|
| 2000 |
Fischer WB, Pitkeathly M, Wallace BA, Forrest LR, Smith GR, Sansom MS. Transmembrane peptide NB of influenza B: a simulation, structure, and conductance study. Biochemistry. 39: 12708-16. PMID 11027151 DOI: 10.1021/Bi001000E |
0.625 |
|
| 2000 |
Schnick C, Forrest LR, Sansom MS, Groth G. Molecular contacts in the transmembrane c-subunit oligomer of F-ATPases identified by tryptophan substitution mutagenesis. Biochimica Et Biophysica Acta. 1459: 49-60. PMID 10924898 DOI: 10.1016/S0005-2728(00)00112-2 |
0.536 |
|
| 2000 |
Capener CE, Shrivastava IH, Ranatunga KM, Forrest LR, Smith GR, Sansom MS. Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel. Biophysical Journal. 78: 2929-42. PMID 10827973 DOI: 10.1016/S0006-3495(00)76833-0 |
0.643 |
|
| 2000 |
Fischer WB, Forrest LR, Smith GR, Sansom MS. Transmembrane domains of viral ion channel proteins: a molecular dynamics simulation study. Biopolymers. 53: 529-38. PMID 10766949 DOI: 10.1002/(Sici)1097-0282(200006)53:7<529::Aid-Bip1>3.0.Co;2-6 |
0.609 |
|
| 2000 |
Forrest LR, Sansom MS. Membrane simulations: Bigger and better? Current Opinion in Structural Biology. 10: 174-181. PMID 10753807 DOI: 10.1016/S0959-440X(00)00066-X |
0.634 |
|
| 2000 |
Law RJ, Forrest LR, Ranatunga KM, La Rocca P, Tieleman DP, Sansom MS. Structure and dynamics of the pore-lining helix of the nicotinic receptor: MD simulations in water, lipid bilayers, and transbilayer bundles. Proteins. 39: 47-55. PMID 10737926 DOI: 10.1002/(Sici)1097-0134(20000401)39:1<47::Aid-Prot5>3.0.Co;2-A |
0.536 |
|
| 2000 |
Shrivastava IH, Capener CE, Forrest LR, Sansom MS. Structure and dynamics of K channel pore-lining helices: a comparative simulation study. Biophysical Journal. 78: 79-92. PMID 10620275 DOI: 10.1016/S0006-3495(00)76574-X |
0.536 |
|
| 2000 |
Forrest LR, Kukol A, Arkin IT, Tieleman DP, Sansom MS. Exploring models of the influenza A M2 channel: MD simulations in a phospholipid bilayer. Biophysical Journal. 78: 55-69. PMID 10620273 DOI: 10.1016/S0006-3495(00)76572-6 |
0.536 |
|
| 1999 |
Sansom MS, Tieleman DP, Berendsen HJ. The mechanism of channel formation by alamethicin as viewed by molecular dynamics simulations. Novartis Foundation Symposium. 225: 128-41; discussion 1. PMID 10472052 |
0.345 |
|
| 1999 |
Forrest LR, Tieleman DP, Sansom MS. Defining the transmembrane helix of M2 protein from influenza A by molecular dynamics simulations in a lipid bilayer. Biophysical Journal. 76: 1886-96. PMID 10096886 DOI: 10.1016/S0006-3495(99)77347-9 |
0.536 |
|
| 1999 |
Tieleman DP, Berendsen HJ, Sansom MS. An alamethicin channel in a lipid bilayer: molecular dynamics simulations. Biophysical Journal. 76: 1757-69. PMID 10096876 DOI: 10.1016/S0006-3495(99)77337-6 |
0.314 |
|
| 1999 |
Biggin PC, Sansom MS. Interactions of alpha-helices with lipid bilayers: a review of simulation studies. Biophysical Chemistry. 76: 161-83. PMID 10074693 DOI: 10.1016/S0301-4622(98)00233-6 |
0.32 |
|
| 1998 |
Tieleman DP, Breed J, Berendsen HJ, Sansom MS. Alamethicin channels in a membrane: molecular dynamics simulations. Faraday Discussions. 209-23; discussion 2. PMID 10822611 DOI: 10.1039/A806266H |
0.347 |
|
| 1998 |
Sansom MS, Forrest LR, Bull R. Viral ion channels: molecular modeling and simulation. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 20: 992-1000. PMID 10048299 DOI: 10.1002/(Sici)1521-1878(199812)20:12<992::Aid-Bies5>3.0.Co;2-7 |
0.64 |
|
| 1998 |
Tieleman DP, Forrest LR, Sansom MS, Berendsen HJ. Lipid properties and the orientation of aromatic residues in OmpF, influenza M2, and alamethicin systems: molecular dynamics simulations. Biochemistry. 37: 17554-61. PMID 9860871 DOI: 10.1021/Bi981802Y |
0.625 |
|
| 1998 |
Sansom MS, Tieleman DP, Forrest LR, Berendsen HJ. Molecular dynamics simulations of membranes with embedded proteins and peptides: porin, alamethicin and influenza virus M2. Biochemical Society Transactions. 26: 438-43. PMID 9765893 DOI: 10.1042/Bst0260438 |
0.536 |
|
| 1998 |
Sansom MS, Adcock C, Smith GR. Modelling and simulation of ion channels: applications to the nicotinic acetylcholine receptor. Journal of Structural Biology. 121: 246-62. PMID 9615441 DOI: 10.1006/Jsbi.1997.3950 |
0.3 |
|
| 1997 |
Jaikaran DC, Biggin PC, Wenschuh H, Sansom MS, Woolley GA. Structure-function relationships in helix-bundle channels probed via total chemical synthesis of alamethicin dimers: effects of a Gln7 to Asn7 mutation. Biochemistry. 36: 13873-81. PMID 9374865 DOI: 10.1021/Bi9716130 |
0.308 |
|
| 1997 |
Biggin PC, Breed J, Son HS, Sansom MS. Simulation studies of alamethicin-bilayer interactions. Biophysical Journal. 72: 627-36. PMID 9017192 DOI: 10.1016/S0006-3495(97)78701-0 |
0.334 |
|
| 1997 |
Kerr ID, Doak DG, Sankararamakrishnan R, Breed J, Sansom MS. Molecular modelling of Staphylococcal delta-toxin ion channels by restrained molecular dynamics. Protein Engineering. 9: 161-71. PMID 9005437 DOI: 10.1093/Protein/9.2.161 |
0.6 |
|
| 1997 |
Sankararamakrishnan R, Adcock C, Sansom MS. The pore domain of the nicotinic acetylcholine receptor: molecular modeling, pore dimensions, and electrostatics. Biophysical Journal. 71: 1659-71. PMID 8889144 DOI: 10.1016/S0006-3495(96)79370-0 |
0.6 |
|
| 1996 |
Kerr ID, Son HS, Sankararamakrishnan R, Sansom MS. Molecular dynamics simulations of isolated transmembrane helices of potassium channels. Biopolymers. 39: 503-15. PMID 8837517 DOI: 10.1002/(Sici)1097-0282(199610)39:4<503::Aid-Bip3>3.0.Co;2-0 |
0.6 |
|
| 1996 |
Breed J, Sankararamakrishnan R, Kerr ID, Sansom MS. Molecular dynamics simulations of water within models of ion channels. Biophysical Journal. 70: 1643-61. PMID 8785323 DOI: 10.1016/S0006-3495(96)79727-8 |
0.6 |
|
| 1996 |
Sankararamakrishnan R, Sansom MS. Molecular dynamics simulations on solvated M2 helix bundles of nicotinic receptors. Biochemical Society Transactions. 24: 138S. PMID 8674628 DOI: 10.1042/Bst024138S |
0.663 |
|
| 1996 |
Sankararamakrishnan R, Sansom MS. Water-mediated conformational transitions in nicotinic receptor M2 helix bundles: a molecular dynamics study. Febs Letters. 377: 377-82. PMID 8549759 DOI: 10.1016/0014-5793(95)01376-8 |
0.6 |
|
| 1996 |
Sankararamakrishnan R, Sansom MS. Modelling packing interactions in parallel helix bundles: pentameric bundles of nicotinic receptor M2 helices. Biochimica Et Biophysica Acta. 1239: 122-32. PMID 7488617 DOI: 10.1016/0005-2736(95)00165-Y |
0.6 |
|
| 1995 |
Breed J, Kerr ID, Sankararamakrishnan R, Sansom MS. Packing interactions of Aib-containing helices: molecular modeling of parallel dimers of simple hydrophobic helices and of alamethicin. Biopolymers. 35: 639-55. PMID 7766829 DOI: 10.1002/Bip.360350610 |
0.6 |
|
| 1995 |
Sankararamakrishnan R, Sansom MS. Structural features of isolated M2 helices of nicotinic receptors. Simulated annealing via molecular dynamics studies. Biophysical Chemistry. 55: 215-30. PMID 7626742 DOI: 10.1016/0301-4622(95)00006-J |
0.6 |
|
| 1994 |
Kerr ID, Sankararamakrishnan R, Sansom MS. Simplified models of the pore domain of the nicotinic acetylcholine receptor. Biochemical Society Transactions. 22: 158S. PMID 7958226 DOI: 10.1042/Bst022158S |
0.6 |
|
| 1994 |
Sankararamakrishnan R, Sansom MS. Molecular dynamics studies of M2 helices of nicotinic acetylcholine receptors. Biochemical Society Transactions. 22: 156S. PMID 7958224 DOI: 10.1042/Bst022156S |
0.6 |
|
| 1994 |
Kerr ID, Sankararamakrishnan R, Smart OS, Sansom MS. Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics. Biophysical Journal. 67: 1501-15. PMID 7529585 DOI: 10.1016/S0006-3495(94)80624-1 |
0.636 |
|
| 1993 |
Sansom MS, Balaram P, Karle IL. Ion channel formation by zervamicin-IIB. A molecular modelling study. European Biophysics Journal : Ebj. 21: 369-83. PMID 7680608 DOI: 10.1007/Bf00185864 |
0.304 |
|
| 1985 |
Sansom M, Stuart D, Acharya K, Hajdu J, McLaughlin P, Johnson L. Glycogen phosphorylase b — the molecular anatomy of a large regulatory enzyme Journal of Molecular Structure: Theochem. 123: 3-25. DOI: 10.1016/0166-1280(85)85181-2 |
0.616 |
|
| 1984 |
Lorek A, Wilson KS, Sansom MS, Stuart DI, Stura EA, Jenkins JA, Zanotti G, Hajdu J, Johnson LN. Allosteric interactions of glycogen phosphorylase b. A crystallographic study of glucose 6-phosphate and inorganic phosphate binding to di-imidate-cross-linked phosphorylase b. The Biochemical Journal. 218: 45-60. PMID 6424657 DOI: 10.1042/Bj2180045 |
0.581 |
|
| 1983 |
Stura EA, Zanotti G, Babu YS, Sansom MS, Stuart DI, Wilson KS, Johnson LN, Van de Werve G. Comparison of AMP and NADH binding to glycogen phosphorylase b. Journal of Molecular Biology. 170: 529-65. PMID 6415289 DOI: 10.1016/S0022-2836(83)80160-0 |
0.424 |
|
| 1980 |
Johnson LN, Stura EA, Wilson KS, Sansom MS, Weber IT. Nucleotide binding to glycogen phosphorylase b in the crystal. Journal of Molecular Biology. 134: 639-53. PMID 119868 DOI: 10.1016/0022-2836(79)90371-1 |
0.432 |
|
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