Naimat K Bari - Related publications

2014- Institute of Nano Science and Technology, Mohali, India 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Wesalo JS, Deiters A. Fast phosphine-activated control of protein function using unnatural lysine analogues. Methods in Enzymology. 638: 191-217. PMID 32416913 DOI: 10.1016/bs.mie.2020.02.020   
2020 Zhang Y, Wu JLY, Lazarovits J, Chan WCW. An analysis of the binding function and structural organization of the protein corona. Journal of the American Chemical Society. PMID 32293877 DOI: 10.1021/jacs.0c01853   
2020 Zhou W, Šmidlehner T, Jerala R. Synthetic biology principles for the design of protein with novel structures and functions. Febs Letters. PMID 32324903 DOI: 10.1002/1873-3468.13796   
2020 Zhang N, Mei K, Guan P, Hu X, Zhao Y. Protein-Based Artificial Nanosystems in Cancer Therapy. Small (Weinheim An Der Bergstrasse, Germany). e1907256. PMID 32378796 DOI: 10.1002/smll.201907256   
2020 Sun H, Li Y, Yu S, Liu J. Hierarchical Self-Assembly of Proteins Through Rationally Designed Supramolecular Interfaces. Frontiers in Bioengineering and Biotechnology. 8: 295. PMID 32426335 DOI: 10.3389/fbioe.2020.00295   
2020 Ferruz N, Lobos F, Lemm D, Toledo-Patino S, Farías-Rico JA, Schmidt S, Höcker B. Identification and Analysis of Natural Building Blocks for Evolution-Guided Fragment-Based Protein Design. Journal of Molecular Biology. PMID 32330481 DOI: 10.1016/j.jmb.2020.04.013   
2020 Queiroz FC, Vargas AMP, Oliveira MGA, Comarela GV, Silveira SA. ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces. Bmc Bioinformatics. 21: 143. PMID 32293241 DOI: 10.1186/s12859-020-3474-1   
2020 Kielkopf CL, Bauer W, Urbatsch IL. Methods for Measuring the Concentrations of Proteins. Cold Spring Harbor Protocols. 2020: pdb.top102277. PMID 32238598 DOI: 10.1101/pdb.top102277   
2020 Mazmanian K, Sargsyan K, Lim C. How the Local Environment of Functional Sites Regulates Protein Function. Journal of the American Chemical Society. PMID 32407086 DOI: 10.1021/jacs.0c02430   
2020 Mohanty S. Aggregation and coacervation with Monte Carlo simulations. Progress in Molecular Biology and Translational Science. 170: 505-520. PMID 32145952 DOI: 10.1016/bs.pmbts.2019.12.005   
2020 Arter WE, Levin A, Krainer G, Knowles TPJ. Microfluidic approaches for the analysis of protein-protein interactions in solution. Biophysical Reviews. PMID 32266673 DOI: 10.1007/s12551-020-00679-4   
2020 Baalmann M, Neises L, Bitsch S, Schneider H, Deweid L, Werther P, Ilkenhans N, Wolfring M, Ziegler MJ, Wilhelm J, Kolmar H, Wombacher R. A bioorthogonal click chemistry toolbox for targeted synthesis of branched and well-defined protein-protein conjugates. Angewandte Chemie (International Ed. in English). PMID 32342666 DOI: 10.1002/anie.201915079   
2020 Sae-Chew P, Rujirawat T, Kumsang Y, Payattikul P, Lohnoo T, Yingyong W, Jaturapaktrarak C, Rotchanapreeda T, Reamtong O, Srisuk T, Kittichotirat W, Krajaejun T. Automated Cell-Free Multiprotein Synthesis Facilitates the Identification of a Secretory, Oligopeptide Elicitor-Like, Immunoreactive Protein of the Oomycete Pythium insidiosum. Msystems. 5. PMID 32398276 DOI: 10.1128/mSystems.00196-20   
2020 Li F, Wang D, Zhou J, Men D, Zhan XE. Design and biosynthesis of functional protein nanostructures. Science China. Life Sciences. PMID 32253589 DOI: 10.1007/s11427-019-1641-6   
2020 Kavunja HW, Biegas KJ, Banahene N, Stewart JA, Piligian BF, Groenevelt JM, Sein CE, Morita YS, Niederweis M, Siegrist MS, Swarts BM. Photoactivatable Glycolipid Probes for Identifying Mycolate-Protein Interactions in Live Mycobacteria. Journal of the American Chemical Society. PMID 32293873 DOI: 10.1021/jacs.0c01065   
2020 Syu GD, Dunn J, Zhu H. Developments and Applications of Functional Protein Microarrays. Molecular & Cellular Proteomics : McP. PMID 32303587 DOI: 10.1074/mcp.R120.001936   
2020 Dörrbaum AR, Alvarez-Castelao B, Nassim-Assir B, Langer JD, Schuman EM. Proteome dynamics during homeostatic scaling in cultured neurons. Elife. 9. PMID 32238265 DOI: 10.7554/eLife.52939   
2020 Huang SS, Hsu LJ, Chang NS. Functional role of WW domain-containing proteins in tumor biology and diseases: Insight into the role in ubiquitin-proteasome system. Faseb Bioadvances. 2: 234-253. PMID 32259050 DOI: 10.1096/fba.2019-00060   
2020 Zhao B, Zhuang J, Xu M, Liu T, Limpikirati P, Thayumanavan S, Vachet RW. Covalent Labeling with an α, β Unsaturated Carbonyl Scaffold for Studying Protein Structure and Interactions by Mass Spectrometry. Analytical Chemistry. PMID 32250591 DOI: 10.1021/acs.analchem.0c00463   
2020 Brant EJ, Rietman EA, Klement GL, Cavaglia M, Tuszynski JA. Personalized therapy design for systemic lupus erythematosus based on the analysis of protein-protein interaction networks. Plos One. 15: e0226883. PMID 32191711 DOI: 10.1371/journal.pone.0226883   
2020 Ghosh DK, Ranjan A. The metastable states of proteins. Protein Science : a Publication of the Protein Society. PMID 32223005 DOI: 10.1002/pro.3859   
2020 Lemmens L, Ottmann C, Brunsveld L. Conjugated protein domains as engineered scaffold proteins. Bioconjugate Chemistry. PMID 32374984 DOI: 10.1021/acs.bioconjchem.0c00183   
2020 Chen C, Ulbrich MH. Zinc Finger-Mediated Labeling Reveals the Stoichiometry of Membrane Proteins. Acs Nano. PMID 32208669 DOI: 10.1021/acsnano.9b08865   
2020 Kaushik R, Zhang KYJ. A Protein Sequence Fitness Function for Identifying Natural and Non-Natural Proteins. Proteins. PMID 32415863 DOI: 10.1002/prot.25900   
2020 Ham TH, Lee Y, Kwon SW, Jang MJ, Park YJ, Lee J. Increasing Coverage of Proteome Identification of the Fruiting Body of by Shotgun Proteomics. Foods (Basel, Switzerland). 9. PMID 32422998 DOI: 10.3390/foods9050632   
2020 Gao J, Qian H, Guo X, Mi Y, Guo J, Zhao J, Xu C, Zheng T, Duan M, Tang Z, Lin C, Shen Z, Jiang Y, Wang X. The signal peptide of Cry1Ia can improve the expression of eGFP or mCherry in Escherichia coli and Bacillus thuringiensis and enhance the host's fluorescent intensity. Microbial Cell Factories. 19: 112. PMID 32448275 DOI: 10.1186/s12934-020-01371-8   
2020 Zhou XF, Zhang CL, Gao XP, Wang WL, He ZF, Jiang FY, Pang YL, Li JH, Ren XJ, Zhou HB, Tan GQ, Lyu JX, Wang W. A simple and rapid protein purification method based on cell-surface display of SUMO-fused recombinant protein and Ulp1 protease. Amb Express. 10: 65. PMID 32266507 DOI: 10.1186/s13568-020-00999-4   
2020 Liu B, Ejaz W, Gong S, Kurbanov M, Canakci M, Anson F, Thayumanavan S. Engineered Interactions with Mesoporous Silica Facilitate Intracellular Delivery of Proteins and Gene Editing. Nano Letters. PMID 32298126 DOI: 10.1021/acs.nanolett.0c01387   
2020 Jana K, Mehra R, Dehury B, Blundell TL, Kepp KP. Common mechanism of thermostability in small α- and β-proteins studied by molecular dynamics. Proteins. PMID 32368818 DOI: 10.1002/prot.25897   
2020 Tan KY, Herr AE. Ferguson analysis of protein electromigration during single-cell electrophoresis in an open microfluidic device. The Analyst. PMID 32347219 DOI: 10.1039/c9an02553g   
2020 Quijano-Rubio A, Ulge UY, Walkey CD, Silva DA. The advent of de novo proteins for cancer immunotherapy. Current Opinion in Chemical Biology. PMID 32371023 DOI: 10.1016/j.cbpa.2020.02.002   
2020 Ishikawa M, Tomoshige S, Demizu Y, Naito M. Selective Degradation of Target Proteins by Chimeric Small-Molecular Drugs, PROTACs and SNIPERs. Pharmaceuticals (Basel, Switzerland). 13. PMID 32326273 DOI: 10.3390/ph13040074   
2020 Marathe P, H S MS, Nair D, Bhattacharyya D. mEosBrite Are Bright Variants of mEos3.2 Developed by Semirational Protein Engineering. Journal of Fluorescence. PMID 32385659 DOI: 10.1007/s10895-020-02537-8   
2020 Reitelseder S, Tranberg B, Agergaard J, Dideriksen K, Højfeldt G, Merry ME, Storm AC, Poulsen KR, Hansen ET, van Hall G, Lund P, Holm L. Phenylalanine stable isotope tracer labeling of cow milk and meat and human experimental applications to study dietary protein-derived amino acid availability. Clinical Nutrition (Edinburgh, Scotland). PMID 32334880 DOI: 10.1016/j.clnu.2020.03.017   
2020 Schimek C, Egger E, Tauer C, Striedner G, Brocard C, Cserjan-Puschmann M, Hahn R. Extraction of Recombinant Periplasmic Proteins Under Industrially Relevant Process Conditions: Selectivity and Yield Strongly Depend on Protein Titer and Methodology. Biotechnology Progress. e2999. PMID 32259401 DOI: 10.1002/btpr.2999   
2020 Hayes MA. Dielectrophoresis of proteins: experimental data and evolving theory. Analytical and Bioanalytical Chemistry. PMID 32314000 DOI: 10.1007/s00216-020-02623-7   
2020 Ibrahim AFM, Shen L, Tatham MH, Dickerson D, Prescott AR, Abidi N, Xirodimas DP, Hay RT. Antibody RING-Mediated Destruction of Endogenous Proteins. Molecular Cell. PMID 32454028 DOI: 10.1016/j.molcel.2020.04.032   
2020 Yaeger-Weiss SK, Jennaro TS, Mecha MM, Becker JH, Yang H, Winkler GLW, Cavagnero S. Net Charge and Nonpolar Content Guide the Identification of Folded and Prion Proteins. Biochemistry. PMID 32352283 DOI: 10.1021/acs.biochem.9b01114   
2020 Bettencourt JW, McLaury AR, Limberg AK, Vargas-Hernandez JS, Bayram B, Owen AR, Berry DJ, Sanchez-Sotelo J, Morrey ME, van Wijnen AJ, Abdel MP. Total Protein Staining is Superior to Classical or Tissue-Specific Protein Staining for Standardization of Protein Biomarkers in Heterogeneous Tissue Samples. Gene Reports. 19. PMID 32377595 DOI: 10.1016/j.genrep.2020.100641   
2020 Li Z, Yuan B, Lin X, Meng X, Wen X, Guo Q, Li L, Jiang H, Wang K. Intramolecular trigger remodeling-induced HCR for amplified detection of protein-specific glycosylation. Talanta. 215: 120889. PMID 32312435 DOI: 10.1016/j.talanta.2020.120889   
2020 McKenzie-Coe A, Shortt R, Jones LM. THE MAKING OF A FOOTPRINT IN PROTEIN FOOTPRINTING: A REVIEW IN HONOR OF MICHAEL L. GROSS. Mass Spectrometry Reviews. PMID 32400038 DOI: 10.1002/mas.21632   
2020 Hassan MM, Olaoye OO. Recent Advances in Chemical Biology Using Benzophenones and Diazirines as Radical Precursors. Molecules (Basel, Switzerland). 25. PMID 32414020 DOI: 10.3390/molecules25102285   
2020 Yumimoto K, Yamauchi Y, Nakayama KI. F-Box Proteins and Cancer. Cancers. 12. PMID 32429232 DOI: 10.3390/cancers12051249   
2020 Wilkins JA, Kaasik K, Chalkley RJ, Burlingame AL. Characterization of Prenylated C-terminal Peptides Using a Thiopropyl-based Capture Technique and LC-MS/MS. Molecular & Cellular Proteomics : McP. PMID 32284353 DOI: 10.1074/mcp.RA120.001944   
2020 Zhao W, Li B, Xu S, Zhu Y, Liu X. A fabrication strategy for protein sensors based on an electroactive molecularly imprinted polymer: Cases of bovine serum albumin and trypsin sensing. Analytica Chimica Acta. 1117: 25-34. PMID 32408951 DOI: 10.1016/j.aca.2020.04.023   
2020 Khoo KK, Galleano I, Gasparri F, Wieneke R, Harms H, Poulsen MH, Chua HC, Wulf M, Tampé R, Pless SA. Chemical modification of proteins by insertion of synthetic peptides using tandem protein trans-splicing. Nature Communications. 11: 2284. PMID 32385250 DOI: 10.1038/s41467-020-16208-6   
2020 Liao R, Pham T, Mastroeni D, Coleman PD, Labaer J, Guo J. Highly Sensitive and Multiplexed In-Situ Protein Profiling with Cleavable Fluorescent Streptavidin. Cells. 9. PMID 32244728 DOI: 10.3390/cells9040852   
2020 Luo Y, Wu L, Tu J, Lu Z. Application of Solid-State Nanopore in Protein Detection. International Journal of Molecular Sciences. 21. PMID 32316558 DOI: 10.3390/ijms21082808   
2020 Wu C, Wang J, Na X, Wang Z, Xu X, Wang T. Inducing secondary structural interplays between scallop muscle proteins and soy proteins to form soluble composites. Food & Function. PMID 32226997 DOI: 10.1039/c9fo03106e   
2020 Chen Z, Kibler RD, Hunt A, Busch F, Pearl J, Jia M, VanAernum ZL, Wicky BIM, Dods G, Liao H, Wilken MS, Ciarlo C, Green S, El-Samad H, Stamatoyannopoulos J, et al. De novo design of protein logic gates. Science (New York, N.Y.). 368: 78-84. PMID 32241946 DOI: 10.1126/science.aay2790