| Year |
Citation |
Score |
| 2023 |
Wang B, Lin AE, Yuan J, Novak KE, Koch MD, Wingreen NS, Adamson B, Gitai Z. Single-cell massively-parallel multiplexed microbial sequencing (M3-seq) identifies rare bacterial populations and profiles phage infection. Nature Microbiology. PMID 37653008 DOI: 10.1038/s41564-023-01462-3 |
0.575 |
|
| 2023 |
Han E, Fei C, Alert R, Copenhagen K, Koch MD, Wingreen NS, Shaevitz JW. Local polar order controls mechanical stress and triggers layer formation in developing Myxococcus xanthus colonies. Arxiv. PMID 37576128 |
0.556 |
|
| 2022 |
Ellison CK, Fei C, Dalia TN, Wingreen NS, Dalia AB, Shaevitz JW, Gitai Z. Subcellular localization of type IV pili regulates bacterial multicellular development. Nature Communications. 13: 6334. PMID 36284096 DOI: 10.1038/s41467-022-33564-7 |
0.721 |
|
| 2022 |
Zhang D, Li SH, King CG, Wingreen NS, Gitai Z, Li Z. Global and gene-specific translational regulation in Escherichia coli across different conditions. Plos Computational Biology. 18: e1010641. PMID 36264977 DOI: 10.1371/journal.pcbi.1010641 |
0.556 |
|
| 2022 |
Bridges AA, Prentice JA, Wingreen NS, Bassler BL. Signal Transduction Network Principles Underlying Bacterial Collective Behaviors. Annual Review of Microbiology. PMID 35609948 DOI: 10.1146/annurev-micro-042922-122020 |
0.514 |
|
| 2022 |
Bridges AA, Prentice JA, Fei C, Wingreen NS, Bassler BL. Quantitative input-output dynamics of a c-di-GMP signal transduction cascade in Vibrio cholerae. Plos Biology. 20: e3001585. PMID 35302986 DOI: 10.1371/journal.pbio.3001585 |
0.517 |
|
| 2021 |
Jemielita M, Mashruwala AA, Valastyan JS, Wingreen NS, Bassler BL. Secreted Proteases Control the Timing of Aggregative Community Formation in Vibrio cholerae. Mbio. 12: e0151821. PMID 34809464 DOI: 10.1128/mBio.01518-21 |
0.514 |
|
| 2021 |
Saad-Roy CM, Grenfell BT, Levin SA, van den Driessche P, Wingreen NS. Evolution of an asymptomatic first stage of infection in a heterogeneous population. Journal of the Royal Society, Interface. 18: 20210175. PMID 34129793 DOI: 10.1098/rsif.2021.0175 |
0.382 |
|
| 2021 |
Qin B, Fei C, Wang B, Stone HA, Wingreen NS, Bassler BL. Hierarchical transitions and fractal wrinkling drive bacterial pellicle morphogenesis. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33972433 DOI: 10.1073/pnas.2023504118 |
0.523 |
|
| 2021 |
Saad-Roy CM, Grenfell BT, Levin SA, Pellis L, Stage HB, van den Driessche P, Wingreen NS. Superinfection and the evolution of an initial asymptomatic stage. Royal Society Open Science. 8: 202212. PMID 33614103 DOI: 10.1098/rsos.202212 |
0.36 |
|
| 2021 |
Koch MD, Fei C, Wingreen NS, Shaevitz JW, Gitai Z. Competitive binding of independent extension and retraction motors explains the quantitative dynamics of type IV pili. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33593905 DOI: 10.1073/pnas.2014926118 |
0.683 |
|
| 2021 |
Wong GCL, Antani JD, Lele P, Chen J, Nan B, Kühn MJ, Persat A, Bru JL, Høyland-Kroghsbo NM, Siryaporn A, Conrad J, Carrara F, Yawata Y, Stocker R, Brun Y, ... ... Wingreen NS, et al. Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation. Physical Biology. PMID 33462162 DOI: 10.1088/1478-3975/abdc0e |
0.514 |
|
| 2020 |
Grimm J, Shi H, Wang W, Mitchell AM, Wingreen NS, Huang KC, Silhavy TJ. The inner membrane protein YhdP modulates the rate of anterograde phospholipid flow in . Proceedings of the National Academy of Sciences of the United States of America. PMID 33046656 DOI: 10.1073/pnas.2015556117 |
0.316 |
|
| 2020 |
Li Z, Liu B, Li SH, King CG, Gitai Z, Wingreen NS. Modeling microbial metabolic trade-offs in a chemostat. Plos Computational Biology. 16: e1008156. PMID 32857772 DOI: 10.1371/Journal.Pcbi.1008156 |
0.599 |
|
| 2020 |
Saad-Roy CM, Arinaminpathy N, Wingreen NS, Levin SA, Akey JM, Grenfell BT. Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans. Plos Computational Biology. 16: e1007892. PMID 32584807 DOI: 10.1371/Journal.Pcbi.1007892 |
0.441 |
|
| 2020 |
Qin B, Fei C, Bridges AA, Mashruwala AA, Stone HA, Wingreen NS, Bassler BL. Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy. Science (New York, N.Y.). PMID 32527924 DOI: 10.1126/Science.Abb8501 |
0.586 |
|
| 2020 |
Saad-Roy CM, Wingreen NS, Levin SA, Grenfell BT. Dynamics in a simple evolutionary-epidemiological model for the evolution of an initial asymptomatic infection stage. Proceedings of the National Academy of Sciences of the United States of America. PMID 32385153 DOI: 10.1073/Pnas.1920761117 |
0.453 |
|
| 2020 |
Fei C, Mao S, Yan J, Alert R, Stone HA, Bassler BL, Wingreen NS, Košmrlj A. Nonuniform growth and surface friction determine bacterial biofilm morphology on soft substrates. Proceedings of the National Academy of Sciences of the United States of America. PMID 32193350 DOI: 10.1073/Pnas.1919607117 |
0.574 |
|
| 2020 |
Koch MD, Fei C, Wingreen NS, Gitai Z, Shaevitz JW. Competitive Substrate Binding Coordinates the Two Antagonistic Motors of the Bacterial Type IV Pilus Biophysical Journal. 118: 128a. DOI: 10.1016/J.Bpj.2019.11.833 |
0.689 |
|
| 2019 |
Yan J, Fei C, Mao S, Moreau A, Wingreen NS, Košmrlj A, Stone HA, Bassler BL. Mechanical instability and interfacial energy drive biofilm morphogenesis. Elife. 8. PMID 30848725 DOI: 10.7554/Elife.43920 |
0.566 |
|
| 2019 |
Ali MZ, Huang KC, Wingreen NS, Mukhopadhyay R. Cell geometry and leaflet bilayer asymmetry regulate domain formation in plasma membranes. Physical Review. E. 99: 012401. PMID 30780246 DOI: 10.1103/Physreve.99.012401 |
0.386 |
|
| 2019 |
Yan J, Moreau A, Khodaparast S, Perazzo A, Feng J, Fei C, Mao S, Mukherjee S, Košmrlj A, Wingreen NS, Bassler BL, Stone HA. Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling. Advanced Materials (Deerfield Beach, Fla.). 31: e1807586. PMID 30667139 DOI: 10.1002/Adma.201807586 |
0.521 |
|
| 2019 |
Yan J, Fei C, Mao S, Moreau A, Wingreen NS, Košmrlj A, Stone HA, Bassler BL. Author response: Mechanical instability and interfacial energy drive biofilm morphogenesis Elife. DOI: 10.7554/Elife.43920.048 |
0.529 |
|
| 2018 |
Beroz F, Yan J, Sabass B, Stone HA, Bassler BL, Wingreen NS, Meir Y. Verticalization of bacterial biofilms. Nature Physics. 14: 954-960. PMID 30906420 DOI: 10.1038/S41567-018-0170-4 |
0.593 |
|
| 2018 |
Jemielita M, Wingreen NS, Bassler BL. Quorum sensing controls multicellular aggregate formation. Elife. 7. PMID 30582742 DOI: 10.7554/Elife.42057 |
0.562 |
|
| 2018 |
Yan J, Moreau A, Khodaparast S, Perazzo A, Feng J, Fei C, Mao S, Mukherjee S, Košmrlj A, Wingreen NS, Bassler BL, Stone HA. Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling. Advanced Materials (Deerfield Beach, Fla.). e1804153. PMID 30368924 DOI: 10.1002/Adma.201804153 |
0.559 |
|
| 2018 |
Li SH, Li Z, Park JO, King CG, Rabinowitz JD, Wingreen NS, Gitai Z. Escherichia coli translation strategies differ across carbon, nitrogen and phosphorus limitation conditions. Nature Microbiology. PMID 30038306 DOI: 10.1038/S41564-018-0199-2 |
0.605 |
|
| 2018 |
Jemielita M, Wingreen NS, Bassler BL. Author response: Quorum sensing controls Vibrio cholerae multicellular aggregate formation Elife. DOI: 10.7554/Elife.42057.044 |
0.514 |
|
| 2017 |
Yan J, Nadell CD, Stone HA, Wingreen NS, Bassler BL. Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion. Nature Communications. 8: 327. PMID 28835649 DOI: 10.1038/S41467-017-00401-1 |
0.55 |
|
| 2017 |
Paulick A, Jakovljevic V, Zhang S, Erickstad M, Groisman A, Meir Y, Ryu WS, Wingreen NS, Sourjik V. Mechanism of bidirectional thermotaxis in Escherichia coli. Elife. 6. PMID 28826491 DOI: 10.7554/Elife.26607 |
0.323 |
|
| 2016 |
Bitbol AF, Dwyer RS, Colwell LJ, Wingreen NS. Inferring interaction partners from protein sequences. Proceedings of the National Academy of Sciences of the United States of America. PMID 27663738 DOI: 10.1073/Pnas.1606762113 |
0.3 |
|
| 2016 |
Yan J, Sharo AG, Stone HA, Wingreen NS, Bassler BL. Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging. Proceedings of the National Academy of Sciences of the United States of America. PMID 27555592 DOI: 10.1073/Pnas.1611494113 |
0.591 |
|
| 2016 |
Drescher K, Dunkel J, Nadell CD, van Teeffelen S, Grnja I, Wingreen NS, Stone HA, Bassler BL. Architectural transitions in Vibrio cholerae biofilms at single-cell resolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 26933214 DOI: 10.1073/Pnas.1601702113 |
0.575 |
|
| 2015 |
Wingreen NS, Huang KC. Physics of Intracellular Organization in Bacteria. Annual Review of Microbiology. 69: 361-79. PMID 26488278 DOI: 10.1146/Annurev-Micro-091014-104313 |
0.438 |
|
| 2015 |
Rutherford ST, Valastyan JS, Taillefumier T, Wingreen NS, Bassler BL. Comprehensive analysis reveals how single nucleotides contribute to noncoding RNA function in bacterial quorum sensing. Proceedings of the National Academy of Sciences of the United States of America. 112: E6038-47. PMID 26483489 DOI: 10.1073/Pnas.1518958112 |
0.544 |
|
| 2015 |
Persat A, Nadell CD, Kim MK, Ingremeau F, Siryaporn A, Drescher K, Wingreen NS, Bassler BL, Gitai Z, Stone HA. The mechanical world of bacteria. Cell. 161: 988-97. PMID 26000479 DOI: 10.1016/J.Cell.2015.05.005 |
0.698 |
|
| 2015 |
Taillefumier T, Wingreen NS. Optimal census by quorum sensing. Plos Computational Biology. 11: e1004238. PMID 25965377 DOI: 10.1371/Journal.Pcbi.1004238 |
0.347 |
|
| 2015 |
Bitbol AF, Wingreen NS. Fundamental constraints on the abundances of chemotaxis proteins. Biophysical Journal. 108: 1293-305. PMID 25762341 DOI: 10.1016/J.Bpj.2015.01.024 |
0.322 |
|
| 2015 |
Nadell CD, Drescher K, Wingreen NS, Bassler BL. Extracellular matrix structure governs invasion resistance in bacterial biofilms. The Isme Journal. 9: 1700-9. PMID 25603396 DOI: 10.1038/Ismej.2014.246 |
0.572 |
|
| 2015 |
Feng L, Rutherford ST, Papenfort K, Bagert JD, van Kessel JC, Tirrell DA, Wingreen NS, Bassler BL. A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics. Cell. 160: 228-40. PMID 25579683 DOI: 10.1016/J.Cell.2014.11.051 |
0.664 |
|
| 2014 |
Bassler BL, Wingreen NS. Working together at the interface of physics and biology. Physical Biology. 11: 053010. PMID 25294092 DOI: 10.1088/1478-3975/11/5/053010 |
0.521 |
|
| 2014 |
Castellana M, Wilson MZ, Xu Y, Joshi P, Cristea IM, Rabinowitz JD, Gitai Z, Wingreen NS. Enzyme clustering accelerates processing of intermediates through metabolic channeling. Nature Biotechnology. 32: 1011-8. PMID 25262299 DOI: 10.1038/Nbt.3018 |
0.756 |
|
| 2014 |
Barry RM, Bitbol AF, Lorestani A, Charles EJ, Habrian CH, Hansen JM, Li HJ, Baldwin EP, Wingreen NS, Kollman JM, Gitai Z. Large-scale filament formation inhibits the activity of CTP synthetase. Elife. 3: e03638. PMID 25030911 DOI: 10.7554/Elife.03638 |
0.601 |
|
| 2014 |
Drescher K, Nadell CD, Stone HA, Wingreen NS, Bassler BL. Solutions to the public goods dilemma in bacterial biofilms. Current Biology : Cb. 24: 50-5. PMID 24332540 DOI: 10.1016/J.Cub.2013.10.030 |
0.576 |
|
| 2014 |
Barry RM, Bitbol A, Lorestani A, Charles EJ, Habrian CH, Hansen JM, Li H, Baldwin EP, Wingreen NS, Kollman JM, Gitai Z. Author response: Large-scale filament formation inhibits the activity of CTP synthetase Elife. DOI: 10.7554/Elife.03638.036 |
0.568 |
|
| 2013 |
Dwyer RS, Ricci DP, Colwell LJ, Silhavy TJ, Wingreen NS. Predicting functionally informative mutations in Escherichia coli BamA using evolutionary covariance analysis. Genetics. 195: 443-55. PMID 23934888 DOI: 10.1534/Genetics.113.155861 |
0.309 |
|
| 2013 |
Borenstein DB, Meir Y, Shaevitz JW, Wingreen NS. Non-local interaction via diffusible resource prevents coexistence of cooperators and cheaters in a lattice model. Plos One. 8: e63304. PMID 23691017 DOI: 10.1371/Journal.Pone.0063304 |
0.578 |
|
| 2013 |
Wang S, Wingreen NS. Cell shape can mediate the spatial organization of the bacterial cytoskeleton. Biophysical Journal. 104: 541-52. PMID 23442905 DOI: 10.1016/J.Bpj.2012.12.027 |
0.492 |
|
| 2013 |
Borenstein DB, Meir Y, Shaevitz JW, Wingreen NS. Diffusion of Public Goods Prevents Coexistence of Cooperators and Cheaters in a Stochastic Competition Model Biophysical Journal. 104: 495a. DOI: 10.1016/J.Bpj.2012.11.2730 |
0.575 |
|
| 2012 |
Cooper RM, Wingreen NS, Cox EC. An excitable cortex and memory model successfully predicts new pseudopod dynamics. Plos One. 7: e33528. PMID 22457772 DOI: 10.1371/Journal.Pone.0033528 |
0.53 |
|
| 2012 |
Sourjik V, Wingreen NS. Responding to chemical gradients: bacterial chemotaxis. Current Opinion in Cell Biology. 24: 262-8. PMID 22169400 DOI: 10.1016/J.Ceb.2011.11.008 |
0.308 |
|
| 2012 |
Wingreen N, Furchtgott L, Huang K. Modeling the Shape and Growth of Bacterial Cells Biophysical Journal. 102: 30a. DOI: 10.1016/J.Bpj.2011.11.193 |
0.358 |
|
| 2011 |
Banigan EJ, Gelbart MA, Gitai Z, Wingreen NS, Liu AJ. Filament depolymerization can explain chromosome pulling during bacterial mitosis. Plos Computational Biology. 7: e1002145. PMID 21966261 DOI: 10.1371/Journal.Pcbi.1002145 |
0.578 |
|
| 2011 |
van Teeffelen S, Wang S, Furchtgott L, Huang KC, Wingreen NS, Shaevitz JW, Gitai Z. The bacterial actin MreB rotates, and rotation depends on cell-wall assembly. Proceedings of the National Academy of Sciences of the United States of America. 108: 15822-7. PMID 21903929 DOI: 10.1073/Pnas.1108999108 |
0.769 |
|
| 2011 |
McIsaac RS, Huang KC, Sengupta A, Wingreen NS. Does the potential for chaos constrain the embryonic cell-cycle oscillator? Plos Computational Biology. 7: e1002109. PMID 21779158 DOI: 10.1371/Journal.Pcbi.1002109 |
0.408 |
|
| 2011 |
Wang Y, Tu KC, Ong NP, Bassler BL, Wingreen NS. Protein-level fluctuation correlation at the microcolony level and its application to the Vibrio harveyi quorum-sensing circuit. Biophysical Journal. 100: 3045-53. PMID 21689539 DOI: 10.1016/J.Bpj.2011.05.006 |
0.658 |
|
| 2011 |
Teng SW, Schaffer JN, Tu KC, Mehta P, Lu W, Ong NP, Bassler BL, Wingreen NS. Active regulation of receptor ratios controls integration of quorum-sensing signals in Vibrio harveyi. Molecular Systems Biology. 7: 491. PMID 21613980 DOI: 10.1038/Msb.2011.30 |
0.758 |
|
| 2011 |
Daly KE, Huang KC, Wingreen NS, Mukhopadhyay R. Mechanics of membrane bulging during cell-wall disruption in gram-negative bacteria. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 041922. PMID 21599215 DOI: 10.1103/Physreve.83.041922 |
0.448 |
|
| 2011 |
Furchtgott L, Wingreen NS, Huang KC. Mechanisms for maintaining cell shape in rod-shaped Gram-negative bacteria. Molecular Microbiology. 81: 340-53. PMID 21501250 DOI: 10.1111/J.1365-2958.2011.07616.X |
0.486 |
|
| 2010 |
Nara PL, Tobin GJ, Chaudhuri AR, Trujillo JD, Lin G, Cho MW, Levin SA, Ndifon W, Wingreen NS. How can vaccines against influenza and other viral diseases be made more effective? Plos Biology. 8: e1000571. PMID 21203586 DOI: 10.1371/Journal.Pbio.1000571 |
0.42 |
|
| 2010 |
Meir Y, Jakovljevic V, Oleksiuk O, Sourjik V, Wingreen NS. Precision and kinetics of adaptation in bacterial chemotaxis. Biophysical Journal. 99: 2766-74. PMID 21044573 DOI: 10.1016/J.Bpj.2010.08.051 |
0.331 |
|
| 2010 |
Mora T, Wingreen NS. Limits of sensing temporal concentration changes by single cells. Physical Review Letters. 104: 248101. PMID 20867338 DOI: 10.1103/Physrevlett.104.248101 |
0.307 |
|
| 2010 |
Goyal S, Yuan J, Chen T, Rabinowitz JD, Wingreen NS. Achieving optimal growth through product feedback inhibition in metabolism. Plos Computational Biology. 6: e1000802. PMID 20532205 DOI: 10.1371/Journal.Pcbi.1000802 |
0.524 |
|
| 2010 |
Teng SW, Wang Y, Tu KC, Long T, Mehta P, Wingreen NS, Bassler BL, Ong NP. Measurement of the copy number of the master quorum-sensing regulator of a bacterial cell. Biophysical Journal. 98: 2024-31. PMID 20441767 DOI: 10.1016/J.Bpj.2010.01.031 |
0.779 |
|
| 2010 |
Ng WL, Wei Y, Perez LJ, Cong J, Long T, Koch M, Semmelhack MF, Wingreen NS, Bassler BL. Probing bacterial transmembrane histidine kinase receptor-ligand interactions with natural and synthetic molecules. Proceedings of the National Academy of Sciences of the United States of America. 107: 5575-80. PMID 20212168 DOI: 10.1073/Pnas.1001392107 |
0.631 |
|
| 2010 |
Tu KC, Long T, Svenningsen SL, Wingreen NS, Bassler BL. Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response. Molecular Cell. 37: 567-79. PMID 20188674 DOI: 10.1016/J.Molcel.2010.01.022 |
0.657 |
|
| 2010 |
Kidd PB, Wingreen NS. Modeling the role of covalent enzyme modification in Escherichia coli nitrogen metabolism. Physical Biology. 7: 016006. PMID 20057006 DOI: 10.1088/1478-3975/55/1/016006 |
0.309 |
|
| 2009 |
Mehta P, Goyal S, Long T, Bassler BL, Wingreen NS. Information processing and signal integration in bacterial quorum sensing. Molecular Systems Biology. 5: 325. PMID 19920810 DOI: 10.1038/Msb.2009.79 |
0.756 |
|
| 2009 |
Ndifon W, Wingreen NS, Levin SA. Differential neutralization efficiency of hemagglutinin epitopes, antibody interference, and the design of influenza vaccines. Proceedings of the National Academy of Sciences of the United States of America. 106: 8701-6. PMID 19439657 DOI: 10.1073/Pnas.0903427106 |
0.413 |
|
| 2009 |
Long T, Tu KC, Wang Y, Mehta P, Ong NP, Bassler BL, Wingreen NS. Quantifying the integration of quorum-sensing signals with single-cell resolution. Plos Biology. 7: e68. PMID 19320539 DOI: 10.1371/Journal.Pbio.1000068 |
0.765 |
|
| 2009 |
Teng S, Wang Y, Tu K, Long T, Wingreen N, Bassler BL, Ong PN. Measuring the Number of LuxR Proteins in a Single Cell of V. harveyi Biophysical Journal. 96: 31a. DOI: 10.1016/J.Bpj.2008.12.050 |
0.729 |
|
| 2008 |
Wang H, Wingreen NS, Mukhopadhyay R. Self-organized periodicity of protein clusters in growing bacteria. Physical Review Letters. 101: 218101. PMID 19113453 DOI: 10.1103/Physrevlett.101.218101 |
0.309 |
|
| 2008 |
Huang KC, Mukhopadhyay R, Wen B, Gitai Z, Wingreen NS. Cell shape and cell-wall organization in Gram-negative bacteria. Proceedings of the National Academy of Sciences of the United States of America. 105: 19282-7. PMID 19050072 DOI: 10.1073/Pnas.0805309105 |
0.674 |
|
| 2008 |
Guberman JM, Fay A, Dworkin J, Wingreen NS, Gitai Z. PSICIC: noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution. Plos Computational Biology. 4: e1000233. PMID 19043544 DOI: 10.1371/Journal.Pcbi.1000233 |
0.617 |
|
| 2008 |
Mehta P, Goyal S, Wingreen NS. A quantitative comparison of sRNA-based and protein-based gene regulation. Molecular Systems Biology. 4: 221. PMID 18854820 DOI: 10.1038/Msb.2008.58 |
0.65 |
|
| 2008 |
Endres RG, Wingreen NS. Accuracy of direct gradient sensing by single cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 15749-54. PMID 18843108 DOI: 10.1073/Pnas.0804688105 |
0.307 |
|
| 2008 |
Swem LR, Swem DL, Wingreen NS, Bassler BL. Deducing receptor signaling parameters from in vivo analysis: LuxN/AI-1 quorum sensing in Vibrio harveyi. Cell. 134: 461-73. PMID 18692469 DOI: 10.1016/J.Cell.2008.06.023 |
0.571 |
|
| 2008 |
Pompeani AJ, Irgon JJ, Berger MF, Bulyk ML, Wingreen NS, Bassler BL. The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters. Molecular Microbiology. 70: 76-88. PMID 18681939 DOI: 10.1111/J.1365-2958.2008.06389.X |
0.58 |
|
| 2008 |
Mehta P, Mukhopadhyay R, Wingreen NS. Exponential sensitivity of noise-driven switching in genetic networks. Physical Biology. 5: 026005. PMID 18560045 DOI: 10.1088/1478-3975/5/2/026005 |
0.485 |
|
| 2008 |
Mukhopadhyay R, Huang KC, Wingreen NS. Lipid localization in bacterial cells through curvature-mediated microphase separation. Biophysical Journal. 95: 1034-49. PMID 18390605 DOI: 10.1529/Biophysj.107.126920 |
0.44 |
|
| 2008 |
Hansen CH, Endres RG, Wingreen NS. Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation. Plos Computational Biology. 4: e1. PMID 18179279 DOI: 10.1371/Journal.Pcbi.0040001 |
0.309 |
|
| 2007 |
Goyal S, Wingreen NS. Growth-induced instability in metabolic networks. Physical Review Letters. 98: 138105. PMID 17501245 DOI: 10.1103/Physrevlett.98.138105 |
0.518 |
|
| 2007 |
Li JL, Car R, Tang C, Wingreen NS. Hydrophobic interaction and hydrogen-bond network for a methane pair in liquid water. Proceedings of the National Academy of Sciences of the United States of America. 104: 2626-30. PMID 17299045 DOI: 10.1073/Pnas.0610945104 |
0.429 |
|
| 2006 |
Huang KC, Mukhopadhyay R, Wingreen NS. A curvature-mediated mechanism for localization of lipids to bacterial poles. Plos Computational Biology. 2: e151. PMID 17096591 DOI: 10.1371/Journal.Pcbi.0020151 |
0.45 |
|
| 2006 |
Wingreen NS, Levin SA. Cooperation among microorganisms. Plos Biology. 4: e299. PMID 16968138 DOI: 10.1371/Journal.Pbio.0040299 |
0.442 |
|
| 2006 |
Keymer JE, Endres RG, Skoge M, Meir Y, Wingreen NS. Chemosensing in Escherichia coli: two regimes of two-state receptors. Proceedings of the National Academy of Sciences of the United States of America. 103: 1786-91. PMID 16446460 DOI: 10.1073/Pnas.0507438103 |
0.665 |
|
| 2005 |
Kruus E, Thumfort P, Tang C, Wingreen NS. Gibbs sampling and helix-cap motifs. Nucleic Acids Research. 33: 5343-53. PMID 16174845 DOI: 10.1093/Nar/Gki842 |
0.434 |
|
| 2005 |
Kloster M, Tang C, Wingreen NS. Finding regulatory modules through large-scale gene-expression data analysis. Bioinformatics (Oxford, England). 21: 1172-9. PMID 15513996 DOI: 10.1093/Bioinformatics/Bti096 |
0.427 |
|
| 2004 |
Huang KC, Wingreen NS. Min-protein oscillations in round bacteria. Physical Biology. 1: 229-35. PMID 16204843 DOI: 10.1088/1478-3967/1/4/005 |
0.448 |
|
| 2004 |
Kulkarni RV, Huang KC, Kloster M, Wingreen NS. Pattern formation within Escherichia coli: diffusion, membrane attachment, and self-interaction of MinD molecules. Physical Review Letters. 93: 228103. PMID 15601121 DOI: 10.1103/Physrevlett.93.228103 |
0.435 |
|
| 2004 |
Lenz DH, Mok KC, Lilley BN, Kulkarni RV, Wingreen NS, Bassler BL. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell. 118: 69-82. PMID 15242645 DOI: 10.1016/J.Cell.2004.06.009 |
0.555 |
|
| 2004 |
Emberly EG, Mukhopadhyay R, Tang C, Wingreen NS. Flexibility of beta-sheets: principal component analysis of database protein structures. Proteins. 55: 91-8. PMID 14997543 DOI: 10.1002/Prot.10618 |
0.412 |
|
| 2004 |
Wingreen NS, Li H, Tang C. Designability and thermal stability of protein structures Polymer. 45: 699-705. DOI: 10.1016/J.Polymer.2003.10.062 |
0.438 |
|
| 2003 |
Mukhopadhyay R, Emberly E, Tang C, Wingreen NS. Statistical mechanics of RNA folding: importance of alphabet size. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 041904. PMID 14682970 DOI: 10.1103/Physreve.68.041904 |
0.442 |
|
| 2003 |
Huang KC, Meir Y, Wingreen NS. Dynamic structures in Escherichia coli: spontaneous formation of MinE rings and MinD polar zones. Proceedings of the National Academy of Sciences of the United States of America. 100: 12724-8. PMID 14569005 DOI: 10.1073/Pnas.2135445100 |
0.447 |
|
| 2003 |
Emberly EG, Mukhopadhyay R, Wingreen NS, Tang C. Flexibility of alpha-helices: results of a statistical analysis of database protein structures. Journal of Molecular Biology. 327: 229-37. PMID 12614621 DOI: 10.1016/S0022-2836(03)00097-4 |
0.426 |
|
| 2003 |
Mok KC, Wingreen NS, Bassler BL. Vibrio harveyi quorum sensing: a coincidence detector for two autoinducers controls gene expression. The Embo Journal. 22: 870-81. PMID 12574123 DOI: 10.1093/Emboj/Cdg085 |
0.543 |
|
| 2002 |
Li H, Tang C, Wingreen NS. Designability of protein structures: a lattice-model study using the Miyazawa-Jernigan matrix. Proteins. 49: 403-12. PMID 12360530 DOI: 10.1002/Prot.10239 |
0.439 |
|
| 2002 |
Emberly EG, Wingreen NS, Tang C. Designability of alpha-helical proteins. Proceedings of the National Academy of Sciences of the United States of America. 99: 11163-8. PMID 12177419 DOI: 10.1073/Pnas.162105999 |
0.434 |
|
| 2002 |
Miller J, Zeng C, Wingreen NS, Tang C. Emergence of highly designable protein-backbone conformations in an off-lattice model. Proteins. 47: 506-12. PMID 12001229 DOI: 10.1002/Prot.10107 |
0.452 |
|
| 2002 |
Emberly EG, Miller J, Zeng C, Wingreen NS, Tang C. Identifying proteins of high designability via surface-exposure patterns. Proteins. 47: 295-304. PMID 11948783 DOI: 10.1002/Prot.10067 |
0.431 |
|
| 2002 |
Cejtin H, Edler J, Gottlieb A, Helling R, Li H, Philbin J, Wingreen N, Tang C. Fast tree search for enumeration of a lattice model of protein folding Journal of Chemical Physics. 116: 352-359. DOI: 10.1063/1.1423324 |
0.452 |
|
| 2002 |
Tang C, Wingreen NS. Toward designing novel protein folds Nec Research and Development. 43: 242-245. |
0.341 |
|
| 2001 |
Helling R, Li H, Mélin R, Miller J, Wingreen N, Zeng C, Tang C. The designability of protein structures Journal of Molecular Graphics and Modelling. 19: 157-167. PMID 11381527 DOI: 10.1016/S1093-3263(00)00137-6 |
0.443 |
|
| 2000 |
Wang T, Miller J, Wingreen NS, Tang C, Dill KA. Symmetry and designability for lattice protein models Journal of Chemical Physics. 113: 8329-8336. DOI: 10.1063/1.1315324 |
0.45 |
|
| 2000 |
Li H, Miller J, Zeng C, Helling R, Wingreen N, Tang C. Designability of protein structures Journal of Molecular Graphics & Modelling. 18: 555. DOI: 10.1016/S1093-3263(00)80132-1 |
0.424 |
|
| 1999 |
Mélin R, Li H, Wingreen NS, Tang C. Designability, thermodynamic stability, and dynamics in protein folding: A lattice model study Journal of Chemical Physics. 110: 1252-1262. DOI: 10.1063/1.478168 |
0.44 |
|
| 1998 |
Li H, Tang C, Wingreen NS. Are protein folds atypical? Proceedings of the National Academy of Sciences of the United States of America. 95: 4987-90. PMID 9560215 DOI: 10.1073/Pnas.95.9.4987 |
0.442 |
|
| 1998 |
Jauho AP, Wingreen NS. Theory of phase-sensitive measurement of photon-assisted tunneling through a quantum dot Physical Review B. 58: 9619-9622. DOI: 10.1103/Physrevb.58.9619 |
0.499 |
|
| 1997 |
Li H, Tang C, Wingreen NS. Nature of driving force for protein folding: A result from analyzing the statistical potential Physical Review Letters. 79: 765-768. DOI: 10.1103/Physrevlett.79.765 |
0.465 |
|
| 1996 |
Li H, Helling R, Tang C, Wingreen N. Emergence of preferred structures in a simple model of protein folding Science. 273: 666-669. PMID 8662562 DOI: 10.1126/Science.273.5275.666 |
0.439 |
|
| 1994 |
Jauho AP, Wingreen NS, Meir Y. Time-dependent transport in interacting and noninteracting resonant-tunneling systems. Physical Review. B, Condensed Matter. 50: 5528-5544. PMID 9976896 DOI: 10.1103/Physrevb.50.5528 |
0.518 |
|
| 1994 |
Jauho AP, Wingreen NS, Meir Y. Time-dependent transport in mesoscopic systems: General formalism and applications Semiconductor Science and Technology. 9: 926-929. DOI: 10.1088/0268-1242/9/5S/141 |
0.517 |
|
| 1993 |
Wingreen NS, Jauho AP, Meir Y. Time-dependent transport through a mesoscopic structure. Physical Review. B, Condensed Matter. 48: 8487-8490. PMID 10007056 DOI: 10.1103/Physrevb.48.8487 |
0.501 |
|
| 1989 |
Wingreen NS, Jacobsen KW, Wilkins JW. Inelastic scattering in resonant tunneling. Physical Review. B, Condensed Matter. 40: 11834-11850. PMID 9991790 DOI: 10.1103/Physrevb.40.11834 |
0.462 |
|
| 1988 |
Wingreen NS, Jacobsen KW, Wilkins JW. Resonant tunneling with electron-phonon interaction: An exactly solvable model. Physical Review Letters. 61: 1396-1399. PMID 10038783 DOI: 10.1103/Physrevlett.61.1396 |
0.471 |
|
| 1988 |
Wingreen NS, Jacobsen KW, Wilkins JW. Erratum: Resonant tunneling with electron-phonon interaction: An exactly solvable model (Physical Review Letters (1988) 61, 22 (2633)) Physical Review Letters. 61: 2633. DOI: 10.1103/Physrevlett.61.2633.2 |
0.484 |
|
| 1987 |
Wingreen NS, Stanton CJ, Wilkins JW. Wingreen, Stanton, and Wilkins reply. Physical Review Letters. 59: 376. PMID 10035749 DOI: 10.1103/Physrevlett.59.376 |
0.451 |
|
| 1987 |
Wingreen NS, Stanton CJ, Wilkins JW. Wingreen, Stanton, and Wilkins reply [3] Physical Review Letters. 59: 376. DOI: 10.1103/PhysRevLett.59.376 |
0.384 |
|
| 1986 |
Wingreen NS, Stanton CJ, Wilkins JW. Electron-electron scattering in nondegenerate semiconductors: Driving the anisotropic distribution toward a displaced Maxwellian. Physical Review Letters. 57: 1084-1087. PMID 10034241 DOI: 10.1103/Physrevlett.57.1084 |
0.468 |
|
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