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Jeffrey Trimarchi - Publications

Affiliations: 
Iowa State University, Ames, IA, United States 
Area:
Visual system, neuroscience
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30/41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Laboissonniere LA, Goetz JJ, Martin GM, Bi R, Lund TJS, Ellson L, Lynch MR, Mooney B, Wickham H, Liu P, Schwartz GW, Trimarchi JM. Molecular signatures of retinal ganglion cells revealed through single cell profiling. Scientific Reports. 9: 15778. PMID 31673015 DOI: 10.1038/s41598-019-52215-4  0.847
2018 Chowdhury R, Laboissonniere LA, Wester AK, Muller M, Trimarchi JM. The Trim family of genes and the retina: Expression and functional characterization. Plos One. 13: e0202867. PMID 30208054 DOI: 10.1371/journal.pone.0202867  0.668
2018 Laboissonniere LA, Smith CL, Mesenbrink J, Chowdhury R, Burney A, Lang M, Sierra M, Stark A, Maldonado-Casalduc G, Muller M, Trimarchi JM. ALS-associated genes display CNS expression in the developing zebrafish. Gene Expression Patterns : Gep. PMID 30165106 DOI: 10.1016/j.gep.2018.08.003  0.326
2017 Laboissonniere LA, Sonoda T, Lee SK, Trimarchi JM, Schmidt TM. Single-cell RNA-Seq of Defined Subsets of Retinal Ganglion Cells. Journal of Visualized Experiments : Jove. PMID 28570514 DOI: 10.3791/55229  0.588
2017 Laboissonniere LA, Martin GM, Goetz JJ, Bi R, Pope B, Weinand K, Ellson L, Fru D, Lee M, Wester AK, Liu P, Trimarchi JM. Single cell transcriptome profiling of developing chick retinal cells. The Journal of Comparative Neurology. PMID 28510275 DOI: 10.1002/cne.24241  0.872
2016 Poulin JF, Tasic B, Hjerling-Leffler J, Trimarchi JM, Awatramani R. Disentangling neural cell diversity using single-cell transcriptomics. Nature Neuroscience. 19: 1131-1141. PMID 27571192 DOI: 10.1038/Nn.4366  0.459
2016 Zhu W, Gramlich OW, Laboissonniere L, Jain A, Sheffield VC, Trimarchi JM, Tucker BA, Kuehn MH. Transplantation of iPSC-derived TM cells rescues glaucoma phenotypes in vivo. Proceedings of the National Academy of Sciences of the United States of America. PMID 27274060 DOI: 10.1073/Pnas.1604153113  0.41
2016 Mullally M, Albrecht C, Horton M, Laboissonniere LA, Goetz JJ, Chowdhury R, Manning A, Wester AK, Bose Q, Trimarchi JM. Expression Profiling of Developing Zebrafish Retinal Cells. Zebrafish. PMID 26982811 DOI: 10.1089/zeb.2015.1184  0.862
2016 Goetz JJ, Laboissonniere LA, Wester AK, Lynch MR, Trimarchi JM. Polo-Like Kinase 3 Appears Dispensable for Normal Retinal Development Despite Robust Embryonic Expression. Plos One. 11: e0150878. PMID 26949938 DOI: 10.1371/journal.pone.0150878  0.859
2015 Goetz JJ, Trimarchi JM. Transcriptomic analyses of Onecut1 and Onecut2 deficient retinas. Genomics Data. 4: 88-9. PMID 26484186 DOI: 10.1016/j.gdata.2015.03.010  0.816
2014 Goetz JJ, Martin GM, Chowdhury R, Trimarchi JM. Onecut1 and Onecut2 play critical roles in the development of the mouse retina. Plos One. 9: e110194. PMID 25313862 DOI: 10.1371/journal.pone.0110194  0.873
2014 Goetz JJ, Farris C, Chowdhury R, Trimarchi JM. Making of a retinal cell: insights into retinal cell-fate determination. International Review of Cell and Molecular Biology. 308: 273-321. PMID 24411174 DOI: 10.1016/B978-0-12-800097-7.00007-5  0.852
2013 Emerson MM, Surzenko N, Goetz JJ, Trimarchi J, Cepko CL. Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors. Developmental Cell. 26: 59-72. PMID 23867227 DOI: 10.1016/J.Devcel.2013.06.005  0.842
2013 Mizeracka K, Trimarchi JM, Stadler MB, Cepko CL. Analysis of gene expression in wild-type and Notch1 mutant retinal cells by single cell profiling. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 242: 1147-59. PMID 23813500 DOI: 10.1002/Dvdy.24006  0.859
2012 Goetz JJ, Trimarchi JM. Transcriptome sequencing of single cells with Smart-Seq. Nature Biotechnology. 30: 763-5. PMID 22871714 DOI: 10.1038/nbt.2325  0.79
2012 Goetz JJ, Trimarchi JM. Single-cell profiling of developing and mature retinal neurons. Journal of Visualized Experiments : Jove. PMID 22546911 DOI: 10.3791/3824  0.866
2012 Hafler BP, Surzenko N, Beier KT, Punzo C, Trimarchi JM, Kong JH, Cepko CL. Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates. Proceedings of the National Academy of Sciences of the United States of America. 109: 7882-7. PMID 22543161 DOI: 10.1073/Pnas.1203138109  0.765
2011 McEvoy J, Flores-Otero J, Zhang J, Nemeth K, Brennan R, Bradley C, Krafcik F, Rodriguez-Galindo C, Wilson M, Xiong S, Lozano G, Sage J, Fu L, Louhibi L, Trimarchi J, et al. Coexpression of normally incompatible developmental pathways in retinoblastoma genesis. Cancer Cell. 20: 260-75. PMID 21840489 DOI: 10.1016/J.Ccr.2011.07.005  0.767
2009 Cherry TJ, Trimarchi JM, Stadler MB, Cepko CL. Development and diversification of retinal amacrine interneurons at single cell resolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 9495-500. PMID 19470466 DOI: 10.1073/pnas.0903264106  0.84
2009 Trimarchi JM, Cho SH, Cepko CL. Identification of genes expressed preferentially in the developing peripheral margin of the optic cup. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 238: 2327-9. PMID 19449303 DOI: 10.1002/dvdy.21973  0.636
2008 Kanadia RN, Clark VE, Punzo C, Trimarchi JM, Cepko CL. Temporal requirement of the alternative-splicing factor Sfrs1 for the survival of retinal neurons. Development (Cambridge, England). 135: 3923-33. PMID 18987029 DOI: 10.1242/Dev.024620  0.82
2008 Trimarchi JM, Harpavat S, Billings NA, Cepko CL. Thyroid hormone components are expressed in three sequential waves during development of the chick retina. Bmc Developmental Biology. 8: 101. PMID 18854032 DOI: 10.1186/1471-213X-8-101  0.803
2008 Roesch K, Jadhav AP, Trimarchi JM, Stadler MB, Roska B, Sun BB, Cepko CL. The transcriptome of retinal Müller glial cells. The Journal of Comparative Neurology. 509: 225-38. PMID 18465787 DOI: 10.1002/cne.21730  0.849
2008 Trimarchi JM, Stadler MB, Cepko CL. Individual retinal progenitor cells display extensive heterogeneity of gene expression. Plos One. 3: e1588. PMID 18270576 DOI: 10.1371/journal.pone.0001588  0.775
2008 Kim DS, Ross SE, Trimarchi JM, Aach J, Greenberg ME, Cepko CL. Identification of molecular markers of bipolar cells in the murine retina. The Journal of Comparative Neurology. 507: 1795-810. PMID 18260140 DOI: 10.1002/Cne.21639  0.821
2007 Trimarchi JM, Stadler MB, Roska B, Billings N, Sun B, Bartch B, Cepko CL. Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling. The Journal of Comparative Neurology. 502: 1047-65. PMID 17444492 DOI: 10.1002/Cne.21368  0.83
2002 Trimarchi JM, Lees JA. Sibling rivalry in the E2F family. Nature Reviews. Molecular Cell Biology. 3: 11-20. PMID 11823794 DOI: 10.1038/Nrm714  0.678
2001 Trimarchi JM, Fairchild B, Wen J, Lees JA. The E2F6 transcription factor is a component of the mammalian Bmi1-containing polycomb complex Proceedings of the National Academy of Sciences. 98: 1519-1524. DOI: 10.1073/Pnas.98.4.1519  0.537
2000 Humbert PO, Rogers C, Ganiatsas S, Landsberg RL, Trimarchi JM, Dandapani S, Brugnara C, Erdman S, Schrenzel M, Bronson RT, Lees JA. E2F4 is essential for normal erythrocyte maturation and neonatal viability. Molecular Cell. 6: 281-91. PMID 10983976 DOI: 10.1016/S1097-2765(00)00029-0  0.614
1998 Trimarchi JM, Fairchild B, Verona R, Moberg K, Andon N, Lees JA. E2F-6, a member of the E2F family that can behave as a transcriptional repressor. Proceedings of the National Academy of Sciences of the United States of America. 95: 2850-5. PMID 9501179 DOI: 10.1073/Pnas.95.6.2850  0.72
Low-probability matches (unlikely to be authored by this person)
2016 Labuzzetta CJ, Antonio ML, Watson PM, Wilson RC, Laboissonniere LA, Trimarchi JM, Genc B, Ozdinler PH, Watson DK, Anderson PE. Complementary feature selection from alternative splicing events and gene expression for phenotype prediction. Bioinformatics (Oxford, England). 32: i421-i429. PMID 27587658 DOI: 10.1093/bioinformatics/btw430  0.259
1995 Foster PL, Gudmundsson G, Trimarchi JM, Cai H, Goodman MF. Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 92: 7951-5. PMID 7644519 DOI: 10.1073/Pnas.92.17.7951  0.184
2020 Sifuentes-Romero I, Ferrufino E, Thakur S, Laboissonniere LA, Solomon M, Smith CL, Keene AC, Trimarchi JM, Kowalko JE. Repeated evolution of eye loss in Mexican cavefish: Evidence of similar developmental mechanisms in independently evolved populations. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 32614138 DOI: 10.1002/Jez.B.22977  0.171
2014 Chew KS, Schmidt TM, Rupp AC, Kofuji P, Trimarchi JM. Loss of gq/11 genes does not abolish melanopsin phototransduction. Plos One. 9: e98356. PMID 24870805 DOI: 10.1371/Journal.Pone.0098356  0.159
2020 Jackson CB, Richard AS, Ojha A, Conkright KA, Trimarchi JM, Bailey CC, Alpert MD, Kay MA, Farzan M, Choe H. AAV vectors engineered to target insulin receptor greatly enhance intramuscular gene delivery. Molecular Therapy. Methods & Clinical Development. 19: 496-506. PMID 33313337 DOI: 10.1016/j.omtm.2020.11.004  0.154
1994 Foster PL, Trimarchi JM. Adaptive reversion of a frameshift mutation in Escherichia coli by simple base deletions in homopolymeric runs. Science (New York, N.Y.). 265: 407-9. PMID 8023164 DOI: 10.1126/Science.8023164  0.145
1995 Foster PL, Trimarchi JM. Adaptive reversion of an episomal frameshift mutation in Escherichia coli requires conjugal functions but not actual conjugation. Proceedings of the National Academy of Sciences of the United States of America. 92: 5487-90. PMID 7777535 DOI: 10.1073/Pnas.92.12.5487  0.137
1995 Foster PL, Trimarchi JM. Conjugation is not required for adaptive reversion of an episomal frameshift mutation in Escherichia coli. Journal of Bacteriology. 177: 6670-1. PMID 7592449 DOI: 10.1128/Jb.177.22.6670-6671.1995  0.13
2023 Callaway HM, Hastie KM, Schendel SL, Li H, Yu X, Shek J, Buck T, Hui S, Bedinger D, Troup C, Dennison SM, Li K, Alpert MD, Bailey CC, Benzeno S, ... ... Trimarchi JM, et al. Bivalent intra-spike binding provides durability against emergent Omicron lineages: Results from a global consortium. Cell Reports. 42: 112014. PMID 36681898 DOI: 10.1016/j.celrep.2023.112014  0.048
2013 Farris C, Trimarchi JM. Plasma-seq: a novel strategy for metastatic prostate cancer analysis. Genome Medicine. 5: 35. PMID 23673197 DOI: 10.1186/gm439  0.046
1996 Foster PL, Trimarchi JM. Conjugation Is Not Required for Adaptive Reversion of an Episomal Frameshift Mutation in . Journal of Bacteriology. 178: 325. PMID 30577325 DOI: 10.1128/jb.178.1.325.1996  0.025
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