| Year |
Citation |
Score |
| 2016 |
Challacombe JF, Petersen JM, Gallegos-Graves V, Hodge D, Pillai S, Kuske CR. Whole genome relationships among Francisella bacteria of diverse origin define new species and provide specific regions for detection. Applied and Environmental Microbiology. PMID 27881415 DOI: 10.1128/Aem.02589-16 |
0.388 |
|
| 2015 |
Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, et al. Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. Proceedings of the National Academy of Sciences of the United States of America. 112: E2813-9. PMID 25964331 DOI: 10.1073/Pnas.1503928112 |
0.319 |
|
| 2014 |
Challacombe JF, Stubben CJ, Klimko CP, Welkos SL, Kern SJ, Bozue JA, Worsham PL, Cote CK, Wolfe DN. Interrogation of the Burkholderia pseudomallei genome to address differential virulence among isolates. Plos One. 9: e115951. PMID 25536074 DOI: 10.1371/Journal.Pone.0115951 |
0.353 |
|
| 2014 |
Okinaka RT, Challacombe J, Drees K, Birdsell DN, Janke N, Naumann A, Seymour M, Hornstra H, Schupp J, Sahl J, Foster JT, Pearson T, Turnbull P, Keim P. Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain. Genome Announcements. 2. PMID 25237016 DOI: 10.1128/Genomea.00853-14 |
0.365 |
|
| 2014 |
Siddaramappa S, Challacombe JF, Petersen JM, Pillai S, Kuske CR. Comparative analyses of a putative Francisella conjugative element. Genome / National Research Council Canada = Gã©Nome / Conseil National De Recherches Canada. 57: 137-44. PMID 24884689 DOI: 10.1139/Gen-2013-0231 |
0.321 |
|
| 2013 |
Challacombe JF, Majid S, Deole R, Brettin TS, Bruce D, Delano SF, Detter JC, Gleasner CD, Han CS, Misra M, Reitenga KG, Mikhailova N, Woyke T, Pitluck S, Nolan M, et al. Complete genome sequence of Halorhodospira halophila SL1. Standards in Genomic Sciences. 8: 206-14. PMID 23991253 DOI: 10.4056/Sigs.3677284 |
0.389 |
|
| 2012 |
Challacombe J, Kuske C. Mobile genetic elements in the bacterial phylum Acidobacteria. Mobile Genetic Elements. 2: 179-183. PMID 23087842 DOI: 10.4161/mge.21943 |
0.339 |
|
| 2012 |
Siddaramappa S, Challacombe JF, Delano SF, Green LD, Daligault H, Bruce D, Detter C, Tapia R, Han S, Goodwin L, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, et al. Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains. Standards in Genomic Sciences. 6: 251-64. PMID 22768368 DOI: 10.4056/Sigs.2806097 |
0.43 |
|
| 2012 |
Siddaramappa S, Challacombe JF, Decastro RE, Pfeiffer F, Sastre DE, Giménez MI, Paggi RA, Detter JC, Davenport KW, Goodwin LA, Kyrpides N, Tapia R, Pitluck S, Lucas S, Woyke T, et al. A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T. Bmc Genomics. 13: 165. PMID 22559199 DOI: 10.1186/1471-2164-13-165 |
0.35 |
|
| 2011 |
Siddaramappa S, Challacombe JF, Duncan AJ, Gillaspy AF, Carson M, Gipson J, Orvis J, Zaitshik J, Barnes G, Bruce D, Chertkov O, Detter JC, Han CS, Tapia R, Thompson LS, et al. Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses. Bmc Genomics. 12: 570. PMID 22111657 DOI: 10.1186/1471-2164-12-570 |
0.427 |
|
| 2011 |
Okinaka RT, Price EP, Wolken SR, Gruendike JM, Chung WK, Pearson T, Xie G, Munk C, Hill KK, Challacombe J, Ivins BE, Schupp JM, Beckstrom-Sternberg SM, Friedlander A, Keim P. An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics. Bmc Genomics. 12: 477. PMID 21962024 DOI: 10.1186/1471-2164-12-477 |
0.415 |
|
| 2011 |
Challacombe JF, Eichorst SA, Hauser L, Land M, Xie G, Kuske CR. Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076. Plos One. 6: e24882. PMID 21949776 DOI: 10.1371/Journal.Pone.0024882 |
0.38 |
|
| 2011 |
Siddaramappa S, Challacombe JF, Petersen JM, Pillai S, Hogg G, Kuske CR. Common ancestry and novel genetic traits of Francisella novicida-like isolates from North America and Australia as revealed by comparative genomic analyses. Applied and Environmental Microbiology. 77: 5110-22. PMID 21666011 DOI: 10.1128/Aem.00337-11 |
0.408 |
|
| 2011 |
Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, ... ... Challacombe J, et al. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biology. 12: R40. PMID 21501500 DOI: 10.1186/Gb-2011-12-4-R40 |
0.349 |
|
| 2010 |
Haley BJ, Grim CJ, Hasan NA, Taviani E, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Huq A, Nair GB, Colwell RR. The pre-seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir. Environmental Microbiology Reports. 2: 208-16. PMID 23766018 DOI: 10.1111/J.1758-2229.2010.00141.X |
0.401 |
|
| 2010 |
McKinlay JB, Laivenieks M, Schindler BD, McKinlay AA, Siddaramappa S, Challacombe JF, Lowry SR, Clum A, Lapidus AL, Burkhart KB, Harkins V, Vieille C. A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production. Bmc Genomics. 11: 680. PMID 21118570 DOI: 10.1186/1471-2164-11-680 |
0.366 |
|
| 2010 |
Hasan NA, Grim CJ, Haley BJ, Chun J, Alam M, Taviani E, Hoq M, Munk AC, Saunders E, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Xie G, et al. Comparative genomics of clinical and environmental Vibrio mimicus. Proceedings of the National Academy of Sciences of the United States of America. 107: 21134-9. PMID 21078967 DOI: 10.1073/Pnas.1013825107 |
0.379 |
|
| 2010 |
Haley BJ, Grim CJ, Hasan NA, Choi SY, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Huq A, Colwell RR. Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae. Bmc Microbiology. 10: 154. PMID 20507608 DOI: 10.1186/1471-2180-10-154 |
0.311 |
|
| 2010 |
Grim CJ, Hasan NA, Taviani E, Haley B, Chun J, Brettin TS, Bruce DC, Detter JC, Han CS, Chertkov O, Challacombe J, Huq A, Nair GB, Colwell RR. Genome sequence of hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and comparative genomics with V. cholerae. Journal of Bacteriology. 192: 3524-33. PMID 20348258 DOI: 10.1128/Jb.00040-10 |
0.386 |
|
| 2009 |
Keim P, Gruendike JM, Klevytska AM, Schupp JM, Challacombe J, Okinaka R. The genome and variation of Bacillus anthracis. Molecular Aspects of Medicine. 30: 397-405. PMID 19729033 DOI: 10.1016/J.Mam.2009.08.005 |
0.421 |
|
| 2009 |
Chun J, Grim CJ, Hasan NA, Lee JH, Choi SY, Haley BJ, Taviani E, Jeon YS, Kim DW, Lee JH, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, et al. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of Sciences of the United States of America. 106: 15442-7. PMID 19720995 DOI: 10.1073/Pnas.0907787106 |
0.377 |
|
| 2009 |
Barabote RD, Xie G, Leu DH, Normand P, Necsulea A, Daubin V, Médigue C, Adney WS, Xu XC, Lapidus A, Parales RE, Detter C, Pujic P, Bruce D, Lavire C, ... Challacombe JF, et al. Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. Genome Research. 19: 1033-43. PMID 19270083 DOI: 10.1101/Gr.084848.108 |
0.363 |
|
| 2009 |
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, et al. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and Environmental Microbiology. 75: 2046-56. PMID 19201974 DOI: 10.1128/Aem.02294-08 |
0.372 |
|
| 2009 |
Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, et al. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences of the United States of America. 106: 1954-9. PMID 19193860 DOI: 10.1073/Pnas.0809575106 |
0.344 |
|
| 2007 |
Xie G, Bruce DC, Challacombe JF, Chertkov O, Detter JC, Gilna P, Han CS, Lucas S, Misra M, Myers GL, Richardson P, Tapia R, Thayer N, Thompson LS, Brettin TS, et al. Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Applied and Environmental Microbiology. 73: 3536-46. PMID 17400776 DOI: 10.1128/Aem.00225-07 |
0.317 |
|
| 2006 |
Han CS, Xie G, Challacombe JF, Altherr MR, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, et al. Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. Journal of Bacteriology. 188: 3382-90. PMID 16621833 DOI: 10.1128/Jb.188.9.3382-3390.2006 |
0.333 |
|
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