| Year |
Citation |
Score |
| 2023 |
Tachikawa K, Shimizu T, Imai T, Ko R, Kawai Y, Omae Y, Tokunaga K, Frith MC, Yamano Y, Mitsuhashi S. Cost-Effective Cas9-Mediated Targeted Sequencing of Spinocerebellar Ataxia Repeat Expansions. The Journal of Molecular Diagnostics : Jmd. PMID 38008286 DOI: 10.1016/j.jmoldx.2023.10.004 |
0.366 |
|
| 2023 |
Ohori S, Miyauchi A, Osaka H, Lourenco CM, Arakaki N, Sengoku T, Ogata K, Honjo RS, Kim CA, Mitsuhashi S, Frith MC, Seyama R, Tsuchida N, Uchiyama Y, Koshimizu E, et al. Biallelic structural variations within detected by long-read sequencing in epilepsy. Life Science Alliance. 6. PMID 37286232 DOI: 10.26508/lsa.202302025 |
0.332 |
|
| 2023 |
Frith MC, Mitsuhashi S. Finding Rearrangements in Nanopore DNA Reads with LAST and dnarrange. Methods in Molecular Biology (Clifton, N.J.). 2632: 161-175. PMID 36781728 DOI: 10.1007/978-1-0716-2996-3_12 |
0.373 |
|
| 2023 |
Mitsuhashi S, Frith MC. Analysis of Tandem Repeat Expansions Using Long DNA Reads. Methods in Molecular Biology (Clifton, N.J.). 2632: 147-159. PMID 36781727 DOI: 10.1007/978-1-0716-2996-3_11 |
0.356 |
|
| 2022 |
Yao Y, Frith M. Improved DNA-versus-Protein Homology Search for Protein Fossils. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 35617174 DOI: 10.1109/TCBB.2022.3177855 |
0.312 |
|
| 2022 |
Frith MC. Paleozoic Protein Fossils Illuminate the Evolution of Vertebrate Genomes and Transposable Elements. Molecular Biology and Evolution. 39. PMID 35348724 DOI: 10.1093/molbev/msac068 |
0.313 |
|
| 2021 |
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, ... ... Frith MC, et al. Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature Communications. 12: 3297. PMID 34078885 DOI: 10.1038/s41467-021-23143-7 |
0.379 |
|
| 2021 |
Koulouras G, Frith MC. Significant non-existence of sequences in genomes and proteomes. Nucleic Acids Research. PMID 33693858 DOI: 10.1093/nar/gkab139 |
0.341 |
|
| 2021 |
Mitsuhashi S, Nakagawa S, Sasaki-Honda M, Sakurai H, Frith MC, Mitsuhashi H. Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells. Human Molecular Genetics. PMID 33693705 DOI: 10.1093/hmg/ddab063 |
0.319 |
|
| 2021 |
Frith MC, Mitsuhashi S, Katoh K. lamassemble: Multiple Alignment and Consensus Sequence of Long Reads. Methods in Molecular Biology (Clifton, N.J.). 2231: 135-145. PMID 33289891 DOI: 10.1007/978-1-0716-1036-7_9 |
0.34 |
|
| 2020 |
Mitsuhashi S, Ohori S, Katoh K, Frith MC, Matsumoto N. A pipeline for complete characterization of complex germline rearrangements from long DNA reads. Genome Medicine. 12: 67. PMID 32731881 DOI: 10.1186/S13073-020-00762-1 |
0.37 |
|
| 2020 |
Lei M, Liang D, Yang Y, Mitsuhashi S, Katoh K, Miyake N, Frith MC, Wu L, Matsumoto N. Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer-Giedion syndrome and Cornelia de Lange syndrome-4. Journal of Human Genetics. PMID 32296131 DOI: 10.1038/S10038-020-0754-6 |
0.369 |
|
| 2020 |
Nakamura H, Doi H, Mitsuhashi S, Miyatake S, Katoh K, Frith MC, Asano T, Kudo Y, Ikeda T, Kubota S, Kunii M, Kitazawa Y, Tada M, Okamoto M, Joki H, et al. Long-read sequencing identifies the pathogenic nucleotide repeat expansion in RFC1 in a Japanese case of CANVAS. Journal of Human Genetics. PMID 32066831 DOI: 10.1038/S10038-020-0733-Y |
0.347 |
|
| 2019 |
Sone J, Mitsuhashi S, Fujita A, Mizuguchi T, Hamanaka K, Mori K, Koike H, Hashiguchi A, Takashima H, Sugiyama H, Kohno Y, Takiyama Y, Maeda K, Doi H, Koyano S, ... ... Frith MC, et al. Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease. Nature Genetics. PMID 31332381 DOI: 10.1038/S41588-019-0459-Y |
0.307 |
|
| 2019 |
Frith MC. How sequence alignment scores correspond to probability models. Bioinformatics (Oxford, England). PMID 31329241 DOI: 10.1093/Bioinformatics/Btz576 |
0.408 |
|
| 2019 |
Mitsuhashi S, Frith MC, Mizuguchi T, Miyatake S, Toyota T, Adachi H, Oma Y, Kino Y, Mitsuhashi H, Matsumoto N. Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads. Genome Biology. 20: 58. PMID 30890163 DOI: 10.1186/S13059-019-1667-6 |
0.444 |
|
| 2019 |
Shabardina V, Kischka T, Manske F, Grundmann N, Frith MC, Suzuki Y, Makalowski W. NanoPipe - a web server for nanopore MinION sequencing data analysis. Gigascience. PMID 30689855 DOI: 10.1093/Gigascience/Giy169 |
0.457 |
|
| 2018 |
Seki M, Katsumata E, Suzuki A, Sereewattanawoot S, Sakamoto Y, Mizushima-Sugano J, Sugano S, Kohno T, Frith MC, Tsuchihara K, Suzuki Y. Evaluation and application of RNA-Seq by MinION. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 30462165 DOI: 10.1093/Dnares/Dsy038 |
0.401 |
|
| 2018 |
Frith M, Shrestha A. A Simplified Description of Child Tables for Sequence Similarity Search. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29994365 DOI: 10.1109/Tcbb.2018.2796064 |
0.357 |
|
| 2018 |
Runtuwene LR, Tuda JSB, Mongan AE, Makalowski W, Frith MC, Imwong M, Srisutham S, Nguyen Thi LA, Tuan NN, Eshita Y, Maeda R, Yamagishi J, Suzuki Y. Nanopore sequencing of drug-resistance-associated genes in malaria parasites, Plasmodium falciparum. Scientific Reports. 8: 8286. PMID 29844487 DOI: 10.1038/S41598-018-26334-3 |
0.339 |
|
| 2018 |
Kuo T, Frith MC, Sese J, Horton P. EAGLE: Explicit Alternative Genome Likelihood Evaluator. Bmc Medical Genomics. 11: 28. PMID 29697369 DOI: 10.1186/S12920-018-0342-1 |
0.454 |
|
| 2017 |
Frith MC, Khan S. A survey of localized sequence rearrangements in human DNA. Nucleic Acids Research. PMID 29272440 DOI: 10.1093/Nar/Gkx1266 |
0.39 |
|
| 2017 |
Shrestha AMS, Frith MC, Asai K, Richard H. Jointly aligning a group of DNA reads improves accuracy of identifying large deletions. Nucleic Acids Research. PMID 29182778 DOI: 10.1093/Nar/Gkx1175 |
0.488 |
|
| 2017 |
Suzuki A, Suzuki M, Mizushima-Sugano J, Frith MC, Makalowski W, Kohno T, Sugano S, Tsuchihara K, Suzuki Y. Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 29117310 DOI: 10.1093/Dnares/Dsx027 |
0.342 |
|
| 2017 |
Mitsuhashi S, Nakagawa S, Takahashi Ueda M, Imanishi T, Frith MC, Mitsuhashi H. Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy. Scientific Reports. 7: 14789. PMID 29093467 DOI: 10.1038/S41598-017-13712-6 |
0.476 |
|
| 2017 |
Yamagishi J, Runtuwene LR, Hayashida K, Mongan AE, Thi LAN, Thuy LN, Nhat CN, Limkittikul K, Sirivichayakul C, Sathirapongsasuti N, Frith M, Makalowski W, Eshita Y, Sugano S, Suzuki Y. Serotyping dengue virus with isothermal amplification and a portable sequencer. Scientific Reports. 7: 3510. PMID 28615658 DOI: 10.1038/S41598-017-03734-5 |
0.449 |
|
| 2017 |
Poulsen TM, Frith M. Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads. Bmc Bioinformatics. 18: 299. PMID 28606054 DOI: 10.1186/S12859-017-1710-0 |
0.43 |
|
| 2017 |
Lim K, Yamada KD, Frith MC, Tomii K. Protein sequence-similarity search acceleration using a heuristic algorithm with a sensitive matrix. Journal of Structural and Functional Genomics. PMID 28083762 DOI: 10.1007/S10969-016-9210-4 |
0.353 |
|
| 2017 |
Hamada M, Ono Y, Asai K, Frith MC. Training alignment parameters for arbitrary sequencers with LAST-TRAIN. Bioinformatics (Oxford, England). 33: 926-928. PMID 28039163 DOI: 10.1093/Bioinformatics/Btw742 |
0.34 |
|
| 2015 |
Sheetlin S, Park Y, Frith MC, Spouge JL. ALP & FALP: C++ Libraries for pairwise local alignment E-values. Bioinformatics (Oxford, England). PMID 26428291 DOI: 10.1093/Bioinformatics/Btv575 |
0.364 |
|
| 2015 |
Frith MC, Kawaguchi R. Split-alignment of genomes finds orthologies more accurately. Genome Biology. 16: 106. PMID 25994148 DOI: 10.1186/S13059-015-0670-9 |
0.416 |
|
| 2015 |
Frith MC, Kawaguchi R. Split-alignment of genomes finds orthologies more accurately Genome Biology. 16. DOI: 10.1186/s13059-015-0670-9 |
0.307 |
|
| 2014 |
Sheetlin SL, Park Y, Frith MC, Spouge JL. Frameshift alignment: statistics and post-genomic applications. Bioinformatics (Oxford, England). 30: 3575-82. PMID 25172925 DOI: 10.1093/Bioinformatics/Btu576 |
0.48 |
|
| 2014 |
Ohmiya H, Vitezic M, Frith MC, Itoh M, Carninci P, Forrest AR, Hayashizaki Y, Lassmann T. RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE). Bmc Genomics. 15: 269. PMID 24779366 DOI: 10.1186/1471-2164-15-269 |
0.46 |
|
| 2014 |
Frith MC. Explaining the correlations among properties of mammalian promoters. Nucleic Acids Research. 42: 4823-32. PMID 24682821 DOI: 10.1093/Nar/Gku115 |
0.331 |
|
| 2014 |
Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M, Itoh M, Andersson R, Mungall CJ, Meehan TF, Schmeier S, ... ... Frith MC, et al. A promoter-level mammalian expression atlas. Nature. 507: 462-70. PMID 24670764 DOI: 10.1038/Nature13182 |
0.402 |
|
| 2014 |
Frith MC, Noé L. Improved search heuristics find 20,000 new alignments between human and mouse genomes. Nucleic Acids Research. 42: e59. PMID 24493737 DOI: 10.1093/Nar/Gku104 |
0.367 |
|
| 2013 |
Shrestha AM, Frith MC. An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome. Bioinformatics (Oxford, England). 29: 965-72. PMID 23413433 DOI: 10.1093/Bioinformatics/Btt073 |
0.449 |
|
| 2013 |
Wijaya E, Frith MC, Horton P, Asai K. Finding protein-coding genes through human polymorphisms. Plos One. 8: e54210. PMID 23349826 DOI: 10.1371/Journal.Pone.0054210 |
0.424 |
|
| 2012 |
Katoh K, Frith MC. Adding unaligned sequences into an existing alignment using MAFFT and LAST. Bioinformatics (Oxford, England). 28: 3144-6. PMID 23023983 DOI: 10.1093/Bioinformatics/Bts578 |
0.455 |
|
| 2012 |
Tsuji J, Frith MC, Tomii K, Horton P. Mammalian NUMT insertion is non-random. Nucleic Acids Research. 40: 9073-88. PMID 22761406 DOI: 10.1093/Nar/Gks424 |
0.426 |
|
| 2012 |
Frith MC, Mori R, Asai K. A mostly traditional approach improves alignment of bisulfite-converted DNA. Nucleic Acids Research. 40: e100. PMID 22457070 DOI: 10.1093/Nar/Gks275 |
0.427 |
|
| 2012 |
Wijaya E, Frith MC, Asai K, Horton P. RecountDB: a database of mapped and count corrected transcribed sequences. Nucleic Acids Research. 40: D1089-92. PMID 22139942 DOI: 10.1093/Nar/Gkr1172 |
0.485 |
|
| 2011 |
Frith MC. Gentle masking of low-complexity sequences improves homology search. Plos One. 6: e28819. PMID 22205972 DOI: 10.1371/Journal.Pone.0028819 |
0.42 |
|
| 2011 |
Hamada M, Wijaya E, Frith MC, Asai K. Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection. Bioinformatics (Oxford, England). 27: 3085-92. PMID 21976422 DOI: 10.1093/Bioinformatics/Btr537 |
0.341 |
|
| 2011 |
Whitington T, Frith MC, Johnson J, Bailey TL. Inferring transcription factor complexes from ChIP-seq data Nucleic Acids Research. 39: e98. PMID 21602262 DOI: 10.1093/Nar/Gkr341 |
0.424 |
|
| 2011 |
Hamada M, Yamada K, Sato K, Frith MC, Asai K. CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences. Nucleic Acids Research. 39: W100-6. PMID 21565800 DOI: 10.1093/Nar/Gkr290 |
0.431 |
|
| 2011 |
Kiełbasa SM, Wan R, Sato K, Horton P, Frith MC. Adaptive seeds tame genomic sequence comparison. Genome Research. 21: 487-93. PMID 21209072 DOI: 10.1101/Gr.113985.110 |
0.391 |
|
| 2011 |
Frith MC. A new repeat-masking method enables specific detection of homologous sequences. Nucleic Acids Research. 39: e23. PMID 21109538 DOI: 10.1093/Nar/Gkq1212 |
0.43 |
|
| 2010 |
Frith MC, Hamada M, Horton P. Parameters for accurate genome alignment. Bmc Bioinformatics. 11: 80. PMID 20144198 DOI: 10.1186/1471-2105-11-80 |
0.399 |
|
| 2010 |
Frith MC, Wan R, Horton P. Incorporating sequence quality data into alignment improves DNA read mapping. Nucleic Acids Research. 38: e100. PMID 20110255 DOI: 10.1093/Nar/Gkq010 |
0.457 |
|
| 2009 |
Wijaya E, Frith MC, Suzuki Y, Horton P. Recount: expectation maximization based error correction tool for next generation sequencing data. Genome Informatics. International Conference On Genome Informatics. 23: 189-201. PMID 20180274 |
0.353 |
|
| 2009 |
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Research. 37: W202-8. PMID 19458158 DOI: 10.1093/Nar/Gkp335 |
0.496 |
|
| 2009 |
Nishida K, Frith MC, Nakai K. Pseudocounts for transcription factor binding sites. Nucleic Acids Research. 37: 939-44. PMID 19106141 DOI: 10.1093/Nar/Gkn1019 |
0.342 |
|
| 2008 |
Frith MC, Park Y, Sheetlin SL, Spouge JL. The whole alignment and nothing but the alignment: the problem of spurious alignment flanks. Nucleic Acids Research. 36: 5863-71. PMID 18796526 DOI: 10.1093/Nar/Gkn579 |
0.46 |
|
| 2008 |
Frith MC, Saunders NFW, Kobe B, Bailey TL. Discovering sequence motifs with arbitrary insertions and deletions Plos Computational Biology. 4. PMID 18437229 DOI: 10.1371/Journal.Pcbi.1000071 |
0.503 |
|
| 2008 |
Frith MC, Valen E, Krogh A, Hayashizaki Y, Carninci P, Sandelin A. A code for transcription initiation in mammalian genomes. Genome Research. 18: 1-12. PMID 18032727 DOI: 10.1101/Gr.6831208 |
0.465 |
|
| 2007 |
Frith MC, Carninci P, Kai C, Kawai J, Bailey TL, Hayashizaki Y, Mattick JS. Splicing bypasses 3' end formation signals to allow complex gene architectures. Gene. 403: 188-93. PMID 17897791 DOI: 10.1016/J.Gene.2007.08.012 |
0.387 |
|
| 2007 |
Shimokawa K, Okamura-Oho Y, Kurita T, Frith MC, Kawai J, Carninci P, Hayashizaki Y. Large-scale clustering of CAGE tag expression data. Bmc Bioinformatics. 8: 161. PMID 17517134 DOI: 10.1186/1471-2105-8-161 |
0.344 |
|
| 2007 |
Baxter LL, Hsu BJ, Umayam L, Wolfsberg TG, Larson DM, Frith MC, Kawai J, Hayashizaki Y, Carninci P, Pavan WJ. Informatic and genomic analysis of melanocyte cDNA libraries as a resource for the study of melanocyte development and function. Pigment Cell Research / Sponsored by the European Society For Pigment Cell Research and the International Pigment Cell Society. 20: 201-9. PMID 17516927 DOI: 10.1111/J.1600-0749.2007.00372.X |
0.478 |
|
| 2007 |
Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CAM, Taylor MS, Engström G PG, Frith MC, Forrest ARR, Alkema WB, Tan SL, Plessy C, Kodzius R, et al. Erratum: Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution Nature Genetics. 39: 1174-1174. DOI: 10.1038/Ng0907-1174B |
0.352 |
|
| 2006 |
Kawaji H, Frith MC, Katayama S, Sandelin A, Kai C, Kawai J, Carninci P, Hayashizaki Y. Dynamic usage of transcription start sites within core promoters. Genome Biology. 7: R118. PMID 17156492 DOI: 10.1186/Gb-2006-7-12-R118 |
0.385 |
|
| 2006 |
Frith MC, Bailey TL, Kasukawa T, Mignone F, Kummerfeld SK, Madera M, Sunkara S, Furuno M, Bult CJ, Quackenbush J, Kai C, Kawai J, Carninci P, Hayashizaki Y, Pesole G, et al. Discrimination of non-protein-coding transcripts from protein-coding mRNA. Rna Biology. 3: 40-8. PMID 17114936 DOI: 10.4161/Rna.3.1.2789 |
0.354 |
|
| 2006 |
Frith MC, Ponjavic J, Fredman D, Kai C, Kawai J, Carninci P, Hayashizaki Y, Hayshizaki Y, Sandelin A. Evolutionary turnover of mammalian transcription start sites. Genome Research. 16: 713-22. PMID 16687732 DOI: 10.1101/Gr.5031006 |
0.506 |
|
| 2006 |
Maeda N, Kasukawa T, Oyama R, Gough J, Frith M, Engström PG, Lenhard B, Aturaliya RN, Batalov S, Beisel KW, Bult CJ, Fletcher CF, Forrest AR, Furuno M, Hill D, et al. Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. Plos Genetics. 2: e62. PMID 16683036 DOI: 10.1371/Journal.Pgen.0020062 |
0.464 |
|
| 2006 |
Furuno M, Pang KC, Ninomiya N, Fukuda S, Frith MC, Bult C, Kai C, Kawai J, Carninci P, Hayashizaki Y, Mattick JS, Suzuki H. Clusters of internally primed transcripts reveal novel long noncoding RNAs. Plos Genetics. 2: e37. PMID 16683026 DOI: 10.1371/Journal.Pgen.0020037 |
0.399 |
|
| 2006 |
Frith MC, Wilming LG, Forrest A, Kawaji H, Tan SL, Wahlestedt C, Bajic VB, Kai C, Kawai J, Carninci P, Hayashizaki Y, Bailey TL, Huminiecki L. Pseudo-messenger RNA: phantoms of the transcriptome. Plos Genetics. 2: e23. PMID 16683022 DOI: 10.1371/Journal.Pgen.0020023 |
0.427 |
|
| 2006 |
Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engström PG, Frith MC, Forrest AR, Alkema WB, Tan SL, Plessy C, Kodzius R, et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nature Genetics. 38: 626-35. PMID 16645617 DOI: 10.1038/Ng1789 |
0.474 |
|
| 2006 |
Ravasi T, Suzuki H, Pang KC, Katayama S, Furuno M, Okunishi R, Fukuda S, Ru K, Frith MC, Gongora MM, Grimmond SM, Hume DA, Hayashizaki Y, Mattick JS. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Research. 16: 11-9. PMID 16344565 DOI: 10.1101/Gr.4200206 |
0.478 |
|
| 2006 |
Pang KC, Frith MC, Mattick JS. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends in Genetics : Tig. 22: 1-5. PMID 16290135 DOI: 10.1016/J.Tig.2005.10.003 |
0.348 |
|
| 2006 |
Frith MC, Kawaji H, Sandelin A, Ponjavic J, Carninci P, Hayashizaki Y. S2d2-4 New complexities of transcription start site usage in mammals(S2-d2: "Bioinformatics of Transcriptional Regulation",Symposia,Abstract,Meeting Program of EABS & BSJ 2006) Seibutsu Butsuri. 46: S129. DOI: 10.2142/Biophys.46.S129_4 |
0.343 |
|
| 2005 |
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, et al. Antisense transcription in the mammalian transcriptome. Science (New York, N.Y.). 309: 1564-6. PMID 16141073 DOI: 10.1126/Science.1112009 |
0.374 |
|
| 2005 |
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, et al. The transcriptional landscape of the mammalian genome. Science (New York, N.Y.). 309: 1559-63. PMID 16141072 DOI: 10.1126/Science.1112014 |
0.449 |
|
| 2005 |
Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, et al. Assessing computational tools for the discovery of transcription factor binding sites. Nature Biotechnology. 23: 137-44. PMID 15637633 DOI: 10.1038/Nbt1053 |
0.714 |
|
| 2004 |
Fu Y, Frith MC, Haverty PM, Weng Z. MotifViz: an analysis and visualization tool for motif discovery. Nucleic Acids Research. 32: W420-3. PMID 15215422 DOI: 10.1093/Nar/Gkh426 |
0.728 |
|
| 2004 |
Haverty PM, Frith MC, Weng Z. CARRIE web service: automated transcriptional regulatory network inference and interactive analysis. Nucleic Acids Research. 32: W213-6. PMID 15215383 DOI: 10.1093/Nar/Gkh402 |
0.687 |
|
| 2004 |
Yu L, Frith MC, Suzuki Y, Peterfreund RA, Gearan T, Sugano S, Schwarzschild MA, Weng Z, Fink JS, Chen JF. Characterization of genomic organization of the adenosine A2A receptor gene by molecular and bioinformatics analyses. Brain Research. 1000: 156-73. PMID 15053963 DOI: 10.1016/J.Brainres.2003.11.072 |
0.522 |
|
| 2004 |
O'Lone R, Frith MC, Karlsson EK, Hansen U. Genomic targets of nuclear estrogen receptors. Molecular Endocrinology (Baltimore, Md.). 18: 1859-75. PMID 15031323 DOI: 10.1210/Me.2003-0044 |
0.419 |
|
| 2004 |
Frith MC, Fu Y, Yu L, Chen JF, Hansen U, Weng Z. Detection of functional DNA motifs via statistical over-representation. Nucleic Acids Research. 32: 1372-81. PMID 14988425 DOI: 10.1093/Nar/Gkh299 |
0.772 |
|
| 2004 |
Frith MC, Halees AS, Hansen U, Weng Z. Site2genome: locating short DNA sequences in whole genomes. Bioinformatics (Oxford, England). 20: 1468-9. PMID 14962939 DOI: 10.1093/Bioinformatics/Bth094 |
0.754 |
|
| 2004 |
Frith MC, Hansen U, Spouge JL, Weng Z. Finding functional sequence elements by multiple local alignment. Nucleic Acids Research. 32: 189-200. PMID 14704356 DOI: 10.1093/Nar/Gkh169 |
0.596 |
|
| 2003 |
Frith MC, Li MC, Weng Z. Cluster-Buster: Finding dense clusters of motifs in DNA sequences. Nucleic Acids Research. 31: 3666-8. PMID 12824389 DOI: 10.1093/Nar/Gkg540 |
0.58 |
|
| 2003 |
Edwards YJ, Carver TJ, Vavouri T, Frith M, Bishop MJ, Elgar G. Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence. Nucleic Acids Research. 31: 3510-7. PMID 12824356 DOI: 10.1093/Nar/Gkg501 |
0.52 |
|
| 2003 |
Hu Z, Frith M, Niu T, Weng Z. SeqVISTA: a graphical tool for sequence feature visualization and comparison. Bmc Bioinformatics. 4: 1. PMID 12513700 DOI: 10.1186/1471-2105-4-1 |
0.615 |
|
| 2002 |
Betley JN, Frith MC, Graber JH, Choo S, Deshler JO. A ubiquitous and conserved signal for RNA localization in chordates. Current Biology : Cb. 12: 1756-61. PMID 12401170 DOI: 10.1016/S0960-9822(02)01220-4 |
0.322 |
|
| 2002 |
Frith MC, Spouge JL, Hansen U, Weng Z. Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences. Nucleic Acids Research. 30: 3214-24. PMID 12136103 DOI: 10.1093/Nar/Gkf438 |
0.573 |
|
| 2002 |
Frith MC, Hansen U, Weng Z. Detection of cis-element clusters in higher eukaryotic DNA. Bioinformatics (Oxford, England). 17: 878-89. PMID 11673232 DOI: 10.1093/Bioinformatics/17.10.878 |
0.583 |
|
| 2002 |
Frith MC, Graber JH, Weng Z, Spouge JL. Gapless Local Alignment of Multiple Sequences Genome Informatics. 13: 436-437. DOI: 10.11234/Gi1990.13.436 |
0.489 |
|
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