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Daniel J. Needleman - Publications

Affiliations: 
Applied Physics Harvard University, Cambridge, MA, United States 
Area:
Physics of Macromolecular Assemblies and Subcellular Organization
Website:
http://www.fas.harvard.edu/~biophys/Daniel_J_Needleman.htm
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73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zimyanin V, Magaj M, Yu CH, Gibney T, Mustafa B, Horton X, Siller K, Cueff L, Bouvrais H, Pécréaux J, Needleman D, Redemann S. Lack of chromokinesin Klp-19 creates a more rigid midzone and affects force transmission during anaphase in . Biorxiv : the Preprint Server For Biology. PMID 37961478 DOI: 10.1101/2023.10.26.564275  0.376
2022 Conway W, Kiewisz R, Fabig G, Kelleher CP, Wu HY, Anjur-Dietrich M, Müller-Reichert T, Needleman DJ. Self-organization of kinetochore-fibers in human mitotic spindles. Elife. 11. PMID 35876665 DOI: 10.7554/eLife.75458  0.325
2021 Yang X, Ha G, Needleman D. A coarse-grained NADH redox model enables inference of subcellular metabolic fluxes from fluorescence lifetime imaging. Elife. 10. PMID 34806591 DOI: 10.7554/eLife.73808  0.724
2021 Venturas M, Yang X, Kumar K, Wells D, Racowsky C, Needleman DJ. Metabolic imaging of human cumulus cells reveals associations among metabolic profiles of cumulus cells, patient clinical factors, and oocyte maturity. Fertility and Sterility. PMID 34481639 DOI: 10.1016/j.fertnstert.2021.07.1204  0.722
2021 Yang X, Heinemann M, Howard J, Huber G, Iyer-Biswas S, Le Treut G, Lynch M, Montooth KL, Needleman DJ, Pigolotti S, Rodenfels J, Ronceray P, Shankar S, Tavassoly I, Thutupalli S, et al. Physical bioenergetics: Energy fluxes, budgets, and constraints in cells. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34140336 DOI: 10.1073/pnas.2026786118  0.713
2020 Choi J, Zhou H, Landig R, Wu HY, Yu X, Von Stetina SE, Kucsko G, Mango SE, Needleman DJ, Samuel ADT, Maurer PC, Park H, Lukin MD. Probing and manipulating embryogenesis via nanoscale thermometry and temperature control. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541064 DOI: 10.1073/Pnas.1922730117  0.339
2019 Fürthauer S, Lemma B, Foster PJ, Ems-McClung SC, Yu CH, Walczak CE, Dogic Z, Needleman DJ, Shelley MJ. Self-straining of actively crosslinked microtubule networks. Nature Physics. 15: 1295-1300. PMID 32322291 DOI: 10.1038/S41567-019-0642-1  0.657
2019 Sanchez T, Venturas M, Aghvami SA, Yang X, Fraden S, Sakkas D, Needleman DJ. Combined noninvasive metabolic and spindle imaging as potential tools for embryo and oocyte assessment. Human Reproduction (Oxford, England). PMID 31812992 DOI: 10.1093/Humrep/Dez210  0.769
2019 Yu CH, Redemann S, Wu HY, Kiewisz R, Yoo TY, Conway W, Farhadifar R, Müller-Reichert T, Needleman D. Central spindle microtubules are strongly coupled to chromosomes during both anaphase A and anaphase B. Molecular Biology of the Cell. mbcE19010074. PMID 31339442 DOI: 10.1091/Mbc.E19-01-0074  0.782
2019 Sanchez T, Zhang M, Needleman D, Seli E. Metabolic imaging via fluorescence lifetime imaging microscopy for egg and embryo assessment. Fertility and Sterility. 111: 212-218. PMID 30691624 DOI: 10.1016/J.Fertnstert.2018.12.014  0.352
2019 Needleman D, Shelley M. The stormy fluid dynamics of the living cell Physics Today. 72: 32-38. DOI: 10.1063/Pt.3.4292  0.305
2018 Foster PJ, Fürthauer S, Shelley MJ, Needleman DJ. From cytoskeletal assemblies to living materials. Current Opinion in Cell Biology. 56: 109-114. PMID 30500745 DOI: 10.1016/J.Ceb.2018.10.010  0.366
2018 Sanchez T, Wang T, Pedro MV, Zhang M, Esencan E, Sakkas D, Needleman D, Seli E. Metabolic imaging with the use of fluorescence lifetime imaging microscopy (FLIM) accurately detects mitochondrial dysfunction in mouse oocytes. Fertility and Sterility. PMID 30446247 DOI: 10.1016/J.Fertnstert.2018.07.022  0.302
2018 Yoo TY, Choi JM, Conway W, Yu CH, Pappu RV, Needleman DJ. Measuring NDC80 binding reveals the molecular basis of tension-dependent kinetochore-microtubule attachments. Elife. 7. PMID 30044223 DOI: 10.7554/Elife.36392  0.803
2018 Oriola D, Needleman DJ, Brugués J. The Physics of the Metaphase Spindle. Annual Review of Biophysics. 47: 655-673. PMID 29792816 DOI: 10.1146/Annurev-Biophys-060414-034107  0.419
2018 Tan R, Foster PJ, Needleman DJ, McKenney RJ. Cooperative Accumulation of Dynein-Dynactin at Microtubule Minus-Ends Drives Microtubule Network Reorganization. Developmental Cell. 44: 233-247.e4. PMID 29401420 DOI: 10.1016/J.Devcel.2017.12.023  0.404
2018 Penfield L, Wysolmerski B, Mauro M, Farhadifar R, Martinez MA, Biggs R, Wu HY, Broberg C, Needleman D, Bahmanyar S. Dynein-pulling forces counteract lamin-mediated nuclear stability during nuclear envelope repair. Molecular Biology of the Cell. PMID 29386297 DOI: 10.1091/Mbc.E17-06-0374  0.316
2018 Yoo TY, Choi J, Conway W, Yu C, Pappu RV, Needleman DJ. Author response: Measuring NDC80 binding reveals the molecular basis of tension-dependent kinetochore-microtubule attachments Elife. DOI: 10.7554/Elife.36392.025  0.771
2018 Kaye B, Stiehl O, Foster PJ, Shelley MJ, Needleman DJ, Fürthauer S. Measuring and modeling polymer concentration profiles near spindle boundaries argues that spindle microtubules regulate their own nucleation New Journal of Physics. 20: 055012. DOI: 10.1088/1367-2630/Aac2A5  0.469
2017 Hanley ML, Yoo TY, Sonnett M, Needleman DJ, Mitchison TJ. Chromosomal passenger complex hydrodynamics suggests chaperoning of the inactive state by nucleoplasmin/nucleophosmin. Molecular Biology of the Cell. PMID 28404751 DOI: 10.1091/Mbc.E16-12-0860  0.777
2017 Kaye B, Yoo TY, Foster PJ, Yu CH, Needleman DJ. Bridging length scales to measure polymer assembly. Molecular Biology of the Cell. PMID 28356424 DOI: 10.1091/Mbc.E16-05-0344  0.77
2017 Nazockdast E, Rahimian A, Needleman D, Shelley M. Cytoplasmic flows as signatures for the mechanics of mitotic positioning. Molecular Biology of the Cell. PMID 28331070 DOI: 10.1091/Mbc.E16-02-0108  0.392
2017 Kaye B, Foster PJ, Yoo TY, Needleman DJ. Developing and Testing a Bayesian Analysis of Fluorescence Lifetime Measurements. Plos One. 12: e0169337. PMID 28060890 DOI: 10.1371/Journal.Pone.0169337  0.764
2017 Foster PJ, Yan W, Fürthauer S, Shelley MJ, Needleman DJ. Connecting macroscopic dynamics with microscopic properties in active microtubule network contraction New Journal of Physics. 19: 125011. DOI: 10.1088/1367-2630/Aa9320  0.368
2017 Needleman D, Dogic Z. Active matter at the interface between materials science and cell biology Nature Reviews Materials. 2. DOI: 10.1038/Natrevmats.2017.48  0.302
2016 Wu HY, Nazockdast E, Shelley MJ, Needleman DJ. Forces positioning the mitotic spindle: Theories, and now experiments. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28026040 DOI: 10.1002/Bies.201600212  0.359
2016 Oh D, Yu CH, Needleman DJ. Spatial organization of the Ran pathway by microtubules in mitosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27439876 DOI: 10.1073/Pnas.1607498113  0.45
2016 Yoo TY, Needleman DJ. Studying Kinetochores In Vivo Using FLIM-FRET. Methods in Molecular Biology (Clifton, N.J.). 1413: 169-86. PMID 27193849 DOI: 10.1007/978-1-4939-3542-0_11  0.79
2016 Hu H, Juvekar A, Lyssiotis CA, Lien EC, Albeck JG, Oh D, Varma G, Hung YP, Ullas S, Lauring J, Seth P, Lundquist MR, Tolan DR, Grant AK, Needleman DJ, et al. Phosphoinositide 3-Kinase Regulates Glycolysis through Mobilization of Aldolase from the Actin Cytoskeleton. Cell. 164: 433-446. PMID 26824656 DOI: 10.1186/2049-3002-2-S1-P86  0.333
2016 Babayev E, Wang T, Sanchez T, Lowther K, Taylor H, Sakkas D, Needleman D, Seli E. Oocyte ageing is associated with altered metabolic stress response and lower mitochondrial DNA copy number that correlate with intracellular NADH and FAD measured by Fluorescence Lifetime Imaging Microscopy (FLIM) Fertility and Sterility. 106: e69. DOI: 10.1016/J.Fertnstert.2016.07.204  0.311
2016 Kaye B, Needleman DJ. Bridging Length Scales to Study Polymer Assembly: Utilizing Bayesian Analysis of FRET to Measure Microtubule Nucleation Biophysical Journal. 110: 130a. DOI: 10.1016/J.Bpj.2015.11.745  0.324
2015 Foster PJ, Fürthauer S, Shelley MJ, Needleman DJ. Active contraction of microtubule networks. Elife. 4. PMID 26701905 DOI: 10.7554/Elife.10837  0.356
2015 Farhadifar R, Baer CF, Valfort AC, Andersen EC, Müller-Reichert T, Delattre M, Needleman DJ. Scaling, selection, and evolutionary dynamics of the mitotic spindle. Current Biology : Cb. 25: 732-40. PMID 25683802 DOI: 10.1016/J.Cub.2014.12.060  0.344
2014 Brugués J, Needleman D. Physical basis of spindle self-organization. Proceedings of the National Academy of Sciences of the United States of America. 111: 18496-500. PMID 25468965 DOI: 10.1073/Pnas.1409404111  0.359
2014 Sazer S, Lynch M, Needleman D. Deciphering the evolutionary history of open and closed mitosis. Current Biology : Cb. 24: R1099-103. PMID 25458223 DOI: 10.1016/J.Cub.2014.10.011  0.309
2014 Yu CH, Langowitz N, Wu HY, Farhadifar R, Brugues J, Yoo TY, Needleman D. Measuring microtubule polarity in spindles with second-harmonic generation. Biophysical Journal. 106: 1578-87. PMID 24739157 DOI: 10.1016/J.Bpj.2014.03.009  0.788
2014 Farhadifar R, Needleman D. Automated segmentation of the first mitotic spindle in differential interference contrast microcopy images of C. elegans embryos. Methods in Molecular Biology (Clifton, N.J.). 1136: 41-5. PMID 24633792 DOI: 10.1007/978-1-4939-0329-0_3  0.376
2014 Ojeda-Lopez MA, Needleman DJ, Song C, Ginsburg A, Kohl PA, Li Y, Miller HP, Wilson L, Raviv U, Choi MC, Safinya CR. Transformation of taxol-stabilized microtubules into inverted tubulin tubules triggered by a tubulin conformation switch. Nature Materials. 13: 195-203. PMID 24441880 DOI: 10.1038/Nmat3858  0.572
2013 Needleman DJ, Ojeda-Lopez MA, Raviv U, Miller HP, Li Y, Song C, Feinstein SC, Wilson L, Choi MC, Safinya CR. Ion specific effects in bundling and depolymerization of taxol-stabilized microtubules. Faraday Discussions. 166: 31-45. PMID 24611267 DOI: 10.1039/C3Fd00063J  0.577
2013 Needleman D. Developing cell biology. Elife. 2: e00571. PMID 23426887 DOI: 10.7554/Elife.00571  0.338
2013 Yu C, Langowitz N, Wu H, Brugues J, Needleman D. Measuring Microtubule Polarity in Spindles with Second-Harmonic-Generation Microscopy Biophysical Journal. 104: 146a. DOI: 10.1016/J.Bpj.2012.11.827  0.462
2013 Needleman D. Physical Aspects of Spindle Assembly Biophysical Journal. 104: 385a-386a. DOI: 10.1016/J.Bpj.2012.11.2150  0.44
2012 Brugués J, Nuzzo V, Mazur E, Needleman DJ. Nucleation and transport organize microtubules in metaphase spindles. Cell. 149: 554-64. PMID 22541427 DOI: 10.1016/J.Cell.2012.03.027  0.48
2012 Oh D, Needleman DJ. Studying Spatial Gradients of Signaling Proteins in Mitotic Spindles with Time-Integrated Multipoint Moment Analysis Biophysical Journal. 102: 207a. DOI: 10.1016/J.Bpj.2011.11.1128  0.388
2011 Oh D, Zidovska A, Xu Y, Needleman DJ. Development of time-integrated multipoint moment analysis for spatially resolved fluctuation spectroscopy with high time resolution. Biophysical Journal. 101: 1546-54. PMID 21943437 DOI: 10.1016/J.Bpj.2011.08.013  0.705
2011 Safinya CR, Raviv U, Needleman DJ, Zidovska A, Choi MC, Ojeda-Lopez MA, Ewert KK, Li Y, Miller HP, Quispe J, Carragher B, Potter CS, Kim MW, Feinstein SC, Wilson L. Nanoscale assembly in biological systems: from neuronal cytoskeletal proteins to curvature stabilizing lipids. Advanced Materials (Deerfield Beach, Fla.). 23: 2260-70. PMID 21506171 DOI: 10.1002/Adma.201004647  0.759
2011 Choi MC, Raviv U, Li Y, Miller HP, Needleman DJ, Kim MW, Wilson L, Feinstein SC, Safinya CR. Synchrotron small angle x-ray scattering quantitatively detects angstrom level changes in the average radius of taxol-stabilized microtubules decorated with the microtubule-associated-protein tau Journal of Physics: Conference Series. 272. DOI: 10.1088/1742-6596/272/1/012001  0.515
2010 Needleman DJ, Farhadifar R. Mitosis: taking the measure of spindle length. Current Biology : Cb. 20: R359-60. PMID 21749955 DOI: 10.1016/J.Cub.2010.02.054  0.373
2010 Nurgaliev D, Gatanov T, Needleman DJ. Automated identification of microtubules in cellular electron tomography. Methods in Cell Biology. 97: 475-95. PMID 20719286 DOI: 10.1016/S0091-679X(10)97025-8  0.737
2010 Mirny LA, Needleman DJ. Quantitative characterization of filament dynamics by single-molecule lifetime measurements. Methods in Cell Biology. 95: 583-600. PMID 20466154 DOI: 10.1016/S0091-679X(10)95029-2  0.392
2010 Needleman DJ, Groen A, Ohi R, Maresca T, Mirny L, Mitchison T. Fast microtubule dynamics in meiotic spindles measured by single molecule imaging: evidence that the spindle environment does not stabilize microtubules. Molecular Biology of the Cell. 21: 323-33. PMID 19940016 DOI: 10.1091/Mbc.E09-09-0816  0.812
2010 Choi M, Raviv U, Miller H, Gaylord M, Kiris E, Ventimiglia D, Needleman D, Chung P, Deek J, LaPointe N, Kim M, Wilson L, Feinstein S, Safinya C. The Effect of Human Microtubule-Associated-Protein Tau and Ionic Strength on the Assembly Structure of Microtubules: Synchrotron X-Ray Scattering and Binding Assay Study Biophysical Journal. 98: 363a. DOI: 10.1016/J.Bpj.2009.12.1957  0.788
2009 Needleman DJ. Cellular allometry: the spindle in development and inheritance. Current Biology : Cb. 19: R846-7. PMID 19788876 DOI: 10.1016/J.Cub.2009.08.028  0.346
2009 Choi MC, Raviv U, Miller HP, Gaylord MR, Kiris E, Ventimiglia D, Needleman DJ, Kim MW, Wilson L, Feinstein SC, Safinya CR. Human microtubule-associated-protein tau regulates the number of protofilaments in microtubules: a synchrotron x-ray scattering study. Biophysical Journal. 97: 519-27. PMID 19619466 DOI: 10.1016/J.Bpj.2009.04.047  0.613
2009 Needleman DJ, Xu Y, Mitchison TJ. Pin-hole array correlation imaging: highly parallel fluorescence correlation spectroscopy. Biophysical Journal. 96: 5050-9. PMID 19527665 DOI: 10.1016/J.Bpj.2009.03.023  0.641
2009 Wühr M, Dumont S, Groen AC, Needleman DJ, Mitchison TJ. How does a millimeter-sized cell find its center? Cell Cycle (Georgetown, Tex.). 8: 1115-21. PMID 19282671 DOI: 10.4161/Cc.8.8.8150  0.793
2009 Gatlin JC, Matov A, Groen AC, Needleman DJ, Maresca TJ, Danuser G, Mitchison TJ, Salmon ED. Spindle fusion requires dynein-mediated sliding of oppositely oriented microtubules. Current Biology : Cb. 19: 287-96. PMID 19230671 DOI: 10.1016/J.Cub.2009.01.055  0.811
2009 Choi MC, Raviv U, Miller H, Gaylord M, Kiris E, Ventimiglia D, Needleman DJ, Kim MW, Wilson L, Feinstein S, Safinya CR. Synchrotron X-ray Scattering Study of the Effects of Microtubule-associated-protein (MAP) Tau on Interprotofilament and Intermicrotubule Interactions Biophysical Journal. 96: 504a-505a. DOI: 10.1016/J.Bpj.2008.12.2601  0.582
2008 Wühr M, Chen Y, Dumont S, Groen AC, Needleman DJ, Salic A, Mitchison TJ. Evidence for an upper limit to mitotic spindle length. Current Biology : Cb. 18: 1256-61. PMID 18718761 DOI: 10.1016/J.Cub.2008.07.092  0.793
2008 Groen AC, Needleman D, Brangwynne C, Gradinaru C, Fowler B, Mazitschek R, Mitchison TJ. A novel small-molecule inhibitor reveals a possible role of kinesin-5 in anastral spindle-pole assembly. Journal of Cell Science. 121: 2293-300. PMID 18559893 DOI: 10.1242/Jcs.024018  0.796
2008 Needleman DJ. Plasmid segregation: is a total understanding within reach? Current Biology : Cb. 18: R212-4. PMID 18334197 DOI: 10.1016/J.Cub.2008.01.003  0.302
2007 Raviv U, Nguyen T, Ghafouri R, Needleman DJ, Li Y, Miller HP, Wilson L, Bruinsma RF, Safinya CR. Microtubule protofilament number is modulated in a stepwise fashion by the charge density of an enveloping layer. Biophysical Journal. 92: 278-87. PMID 17028134 DOI: 10.1529/Biophysj.106.087478  0.555
2007 Raviv U, Needleman DJ, Ewert KK, Safinya CR. Hierarchical bionanotubes formed by the self assembly of microtubules with cationic membranes or polypeptides Journal of Applied Crystallography. 40: s83-s87. DOI: 10.1107/S0021889806051995  0.603
2006 Raviv U, Needleman DJ, Safinya CR. Cationic membranes complexed with oppositely charged microtubules: hierarchical self-assembly leading to bio-nanotubes. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 18: S1271-9. PMID 21690840 DOI: 10.1088/0953-8984/18/28/S10  0.547
2006 Safinya CR, Ewert K, Ahmad A, Evans HM, Raviv U, Needleman DJ, Lin AJ, Slack NL, George C, Samuel CE. Cationic liposome-DNA complexes: from liquid crystal science to gene delivery applications. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 364: 2573-96. PMID 16973477 DOI: 10.1098/Rsta.2006.1841  0.748
2005 Needleman DJ, Ojeda-Lopez MA, Raviv U, Ewert K, Miller HP, Wilson L, Safinya CR. Radial compression of microtubules and the mechanism of action of taxol and associated proteins. Biophysical Journal. 89: 3410-23. PMID 16100275 DOI: 10.1529/Biophysj.104.057679  0.583
2005 Raviv U, Needleman DJ, Li Y, Miller HP, Wilson L, Safinya CR. Cationic liposome-microtubule complexes: pathways to the formation of two-state lipid-protein nanotubes with open or closed ends. Proceedings of the National Academy of Sciences of the United States of America. 102: 11167-72. PMID 16055561 DOI: 10.1073/Pnas.0502183102  0.556
2005 Li Y, Needleman DJ, Raviv U, Ojeda-Lopez MA, Miller HP, Wilson L, Safinya CR. Nanotubular structures of microtubule complexes with spermine and lipid membrane Acta Crystallographica Section a Foundations of Crystallography. 61: c240-c240. DOI: 10.1107/S0108767305089762  0.533
2005 Needleman DJ, Jones JB, Raviv U, Ojeda-Lopez MA, Miller HP, Li Y, Wilson L, Safinya CR. Supramolecular assembly of biological molecules purified from bovine nerve cells: From microtubule bundles and necklaces to neurofilament networks Journal of Physics Condensed Matter. 17: S3225-S3230. DOI: 10.1088/0953-8984/17/45/005  0.72
2004 Needleman DJ, Ojeda-Lopez MA, Raviv U, Ewert K, Jones JB, Miller HP, Wilson L, Safinya CR. Synchrotron X-ray diffraction study of microtubules buckling and bundling under osmotic stress: a probe of interprotofilament interactions. Physical Review Letters. 93: 198104. PMID 15600887 DOI: 10.1103/Physrevlett.93.198104  0.695
2004 Needleman DJ, Ojeda-Lopez MA, Raviv U, Miller HP, Wilson L, Safinya CR. Higher-order assembly of microtubules by counterions: from hexagonal bundles to living necklaces. Proceedings of the National Academy of Sciences of the United States of America. 101: 16099-103. PMID 15534220 DOI: 10.1073/Pnas.0406076101  0.601
2004 Fygenson DK, Needleman DJ, Sneppen K. Variability-based sequence alignment identifies residues responsible for functional differences in alpha and beta tubulin. Protein Science : a Publication of the Protein Society. 13: 25-31. PMID 14691218 DOI: 10.1110/Ps.03225304  0.628
2001 Needleman DJ, Tiesinga PHE, Sejnowski TJ. Collective enhancement of precision in networks of coupled oscillators Physica D: Nonlinear Phenomena. 155: 324-336. DOI: 10.1016/S0167-2789(01)00276-7  0.404
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