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Benjamin S Glicksberg, PhD - Publications

Affiliations: 
2012-2017 Icahn School of Medicine at Mount Sinai, New York, NY, United States 
 2017-2019 University of California, San Francisco, San Francisco, CA 
 2019- Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, New York, NY, United States 
Area:
Clinical Informatics, Genomics, Machine Learning
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89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yeung AWK, Torkamani A, Butte AJ, Glicksberg BS, Schuller B, Rodriguez B, Ting DSW, Bates D, Schaden E, Peng H, Willschke H, van der Laak J, Car J, Rahimi K, Celi LA, et al. The promise of digital healthcare technologies. Frontiers in Public Health. 11: 1196596. PMID 37822534 DOI: 10.3389/fpubh.2023.1196596  0.557
2022 Thompson RC, Simons NW, Wilkins L, Cheng E, Del Valle DM, Hoffman GE, Cervia C, Fennessy B, Mouskas K, Francoeur NJ, Johnson JS, Lepow L, Le Berichel J, Chang C, Beckmann AG, ... ... Glicksberg BS, et al. Molecular states during acute COVID-19 reveal distinct etiologies of long-term sequelae. Nature Medicine. PMID 36482101 DOI: 10.1038/s41591-022-02107-4  0.717
2022 Krittanawong C, Johnson KW, Choi E, Kaplin S, Venner E, Murugan M, Wang Z, Glicksberg BS, Amos CI, Schatz MC, Tang WHW. Artificial Intelligence and Cardiovascular Genetics. Life (Basel, Switzerland). 12. PMID 35207566 DOI: 10.3390/life12020279  0.756
2021 Vunikili R, Glicksberg BS, Johnson KW, Dudley JT, Subramanian L, Shameer K. Predictive Modelling of Susceptibility to Substance Abuse, Mortality and Drug-Drug Interactions in Opioid Patients. Frontiers in Artificial Intelligence. 4: 742723. PMID 34957391 DOI: 10.3389/frai.2021.742723  0.768
2021 Kröner PT, Engels MM, Glicksberg BS, Johnson KW, Mzaik O, van Hooft JE, Wallace MB, El-Serag HB, Krittanawong C. Artificial intelligence in gastroenterology: A state-of-the-art review. World Journal of Gastroenterology. 27: 6794-6824. PMID 34790008 DOI: 10.3748/wjg.v27.i40.6794  0.738
2021 Ryu E, Jenkins GD, Wang Y, Olfson M, Talati A, Lepow L, Coombes BJ, Charney AW, Glicksberg BS, Mann JJ, Weissman MM, Wickramaratne P, Pathak J, Biernacka JM. The importance of social activity to risk of major depression in older adults. Psychological Medicine. 1-9. PMID 34763736 DOI: 10.1017/S0033291721004566  0.699
2021 Vaid A, Johnson KW, Badgeley MA, Somani SS, Bicak M, Landi I, Russak A, Zhao S, Levin MA, Freeman RS, Charney AW, Kukar A, Kim B, Danilov T, Lerakis S, ... ... Glicksberg BS, et al. Using Deep-Learning Algorithms to Simultaneously Identify Right and Left Ventricular Dysfunction From the Electrocardiogram. Jacc. Cardiovascular Imaging. PMID 34656465 DOI: 10.1016/j.jcmg.2021.08.004  0.716
2021 Thompson RC, Simons NW, Wilkins L, Cheng E, Del Valle DM, Hoffman GE, Fennessy B, Mouskas K, Francoeur NJ, Johnson JS, Lepow L, Berichel JL, Chang C, Beckmann AG, Wang YC, ... ... Glicksberg BS, et al. Acute COVID-19 gene-expression profiles show multiple etiologies of long-term sequelae. Medrxiv : the Preprint Server For Health Sciences. PMID 34642700 DOI: 10.1101/2021.10.04.21264434  0.718
2021 Patra BG, Sharma MM, Vekaria V, Adekkanattu P, Patterson OV, Glicksberg B, Lepow LA, Ryu E, Biernacka JM, Furmanchuk A, George TJ, Hogan W, Wu Y, Yang X, Bian J, et al. Extracting social determinants of health from electronic health records using natural language processing: a systematic review. Journal of the American Medical Informatics Association : Jamia. PMID 34613399 DOI: 10.1093/jamia/ocab170  0.735
2021 De Freitas JK, Johnson KW, Golden E, Nadkarni GN, Dudley JT, Bottinger EP, Glicksberg BS, Miotto R. Phe2vec: Automated disease phenotyping based on unsupervised embeddings from electronic health records. Patterns (New York, N.Y.). 2: 100337. PMID 34553174 DOI: 10.1016/j.patter.2021.100337  0.801
2021 Beckmann ND, Comella PH, Cheng E, Lepow L, Beckmann AG, Tyler SR, Mouskas K, Simons NW, Hoffman GE, Francoeur NJ, Del Valle DM, Kang G, Do A, Moya E, Wilkins L, ... ... Glicksberg BS, et al. Downregulation of exhausted cytotoxic T cells in gene expression networks of multisystem inflammatory syndrome in children. Nature Communications. 12: 4854. PMID 34381049 DOI: 10.1038/s41467-021-24981-1  0.718
2021 Rudrapatna VA, Glicksberg BS, Butte AJ. Utility of routinely collected electronic health records data to support effectiveness evaluations in inflammatory bowel disease: a pilot study of tofacitinib. Bmj Health & Care Informatics. 28. PMID 34011632 DOI: 10.1136/bmjhci-2021-100337  0.596
2021 Krittanawong C, Johnson KW, Glicksberg BS. Opportunities and challenges for artificial intelligence in clinical cardiovascular genetics. Trends in Genetics : Tig. PMID 33926743 DOI: 10.1016/j.tig.2021.04.004  0.747
2021 Paranjpe I, Chaudhary K, Johnson KW, Jaladanki SK, Zhao S, De Freitas JK, Pujdas E, Chaudhry F, Bottinger EP, Levin MA, Fayad ZA, Charney AW, Houldsworth J, Cordon-Cardo C, Glicksberg BS, et al. Association of SARS-CoV-2 viral load at admission with in-hospital acute kidney injury: A retrospective cohort study. Plos One. 16: e0247366. PMID 33626098 DOI: 10.1371/journal.pone.0247366  0.737
2021 Charney AW, Simons NW, Mouskas K, Lepow L, Cheng E, Le Berichel J, Chang C, Marvin R, Del Valle DM, Calorossi S, Lansky A, Walker L, Patel M, Xie H, Yi N, ... ... Glicksberg BS, et al. Author Correction: Sampling the host response to SARS-CoV-2 in hospitals under siege. Nature Medicine. PMID 33547460 DOI: 10.1038/s41591-021-01247-3  0.701
2020 Vaid A, Jaladanki SK, Xu J, Teng S, Kumar A, Lee S, Somani S, Paranjpe I, De Freitas JK, Wanyan T, Johnson KW, Bicak M, Klang E, Kwon YJ, Costa A, ... ... Glicksberg BS, et al. Federated Learning of Electronic Health Records Improves Mortality Prediction in Patients Hospitalized with COVID-19. Jmir Medical Informatics. PMID 33400679 DOI: 10.2196/24207  0.76
2020 Paranjpe I, Russak AJ, De Freitas JK, Lala A, Miotto R, Vaid A, Johnson KW, Danieletto M, Golden E, Meyer D, Singh M, Somani S, Kapoor A, O'Hagan R, Manna S, ... ... Glicksberg BS, et al. Retrospective cohort study of clinical characteristics of 2199 hospitalised patients with COVID-19 in New York City. Bmj Open. 10: e040736. PMID 33247020 DOI: 10.1136/bmjopen-2020-040736  0.753
2020 Sun M, Shankar R, Ko M, Chang CD, Yeh SJ, Li S, Liu K, Zhou G, Xing J, VanVelsen A, VanVelsen T, Paithankar S, Feng BY, Young K, Strug M, ... ... Glicksberg BS, et al. Sex differences in viral entry protein expression, host responses to SARS-CoV-2, and in vitro responses to sex steroid hormone treatment in COVID-19. Research Square. PMID 33173861 DOI: 10.21203/rs.3.rs-100914/v1  0.315
2020 Wang Z, Zheutlin A, Kao YH, Ayers K, Gross S, Kovatch P, Nirenberg S, Charney A, Nadkarni G, De Freitas JK, O'Reilly P, Just A, Horowitz C, Martin G, Branch A, ... Glicksberg BS, et al. Hospitalised COVID-19 patients of the Mount Sinai Health System: a retrospective observational study using the electronic medical records. Bmj Open. 10: e040441. PMID 33109676 DOI: 10.1136/bmjopen-2020-040441  0.346
2020 Chaudhary K, Vaid A, Duffy Á, Paranjpe I, Jaladanki S, Paranjpe M, Johnson K, Gokhale A, Pattharanitima P, Chauhan K, O'Hagan R, Van Vleck T, Coca SG, Cooper R, Glicksberg B, et al. Utilization of Deep Learning for Subphenotype Identification in Sepsis-Associated Acute Kidney Injury. Clinical Journal of the American Society of Nephrology : Cjasn. PMID 33033164 DOI: 10.2215/CJN.09330819  0.748
2020 Vaid A, Somani S, Russak AJ, De Freitas JK, Chaudhry FF, Paranjpe I, Johnson KW, Lee SJ, Miotto R, Richter F, Zhao S, Beckmann ND, Naik N, Kia A, Timsina P, ... ... Glicksberg B, et al. Machine Learning to Predict Mortality and Critical Events in COVID-19 Positive New York City Patients: A Cohort Study. Journal of Medical Internet Research. PMID 33027032 DOI: 10.2196/24018  0.757
2020 Beckmann ND, Comella PH, Cheng E, Lepow L, Beckmann AG, Mouskas K, Simons NW, Hoffman GE, Francoeur NJ, Del Valle DM, Kang G, Moya E, Wilkins L, Le Berichel J, Chang C, ... ... Glicksberg BS, et al. Cytotoxic lymphocytes are dysregulated in multisystem inflammatory syndrome in children. Medrxiv : the Preprint Server For Health Sciences. PMID 32909006 DOI: 10.1101/2020.08.29.20182899  0.713
2020 Chan L, Chaudhary K, Saha A, Chauhan K, Vaid A, Zhao S, Paranjpe I, Somani S, Richter F, Miotto R, Lala A, Kia A, Timsina P, Li L, Freeman R, ... ... Glicksberg BS, et al. AKI in Hospitalized Patients with COVID-19. Journal of the American Society of Nephrology : Jasn. PMID 32883700 DOI: 10.1681/Asn.2020050615  0.437
2020 Nadkarni GN, Lala A, Bagiella E, Chang HL, Moreno P, Pujadas E, Arvind V, Bose S, Charney AW, Chen MD, Cordon-Cardo C, Dunn AS, Farkouh ME, Glicksberg B, Kia A, et al. Anticoagulation, Mortality, Bleeding and Pathology Among Patients Hospitalized with COVID-19: A Single Health System Study. Journal of the American College of Cardiology. PMID 32860872 DOI: 10.1016/J.Jacc.2020.08.041  0.355
2020 Charney AW, Simons NW, Mouskas K, Lepow L, Cheng E, Le Berichel J, Chang C, Marvin R, Del Valle DM, Calorossi S, Lansky A, Walker L, Patel M, Xie H, Yi N, ... ... Glicksberg BS, et al. Author Correction: Sampling the host response to SARS-CoV-2 in hospitals under siege. Nature Medicine. PMID 32826990 DOI: 10.1038/S41591-020-1057-3  0.718
2020 Vaid A, Jaladanki SK, Xu J, Teng S, Kumar A, Lee S, Somani S, Paranjpe I, De Freitas JK, Wanyan T, Johnson KW, Bicak M, Klang E, Kwon YJ, Costa A, ... ... Glicksberg BS, et al. Federated Learning of Electronic Health Records Improves Mortality Prediction in Patients Hospitalized with COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 32817979 DOI: 10.1101/2020.08.11.20172809  0.755
2020 Somani SS, Richter F, Fuster V, De Freitas JK, Naik N, Sigel K, Bottinger EP, Levin MA, Fayad Z, Just AC, Charney AW, Zhao S, Glicksberg BS, Lala A, et al. Characterization of Patients Who Return to Hospital Following Discharge from Hospitalization for COVID-19. Journal of General Internal Medicine. PMID 32815060 DOI: 10.1007/S11606-020-06120-6  0.308
2020 Ramlall V, Thangaraj PM, Meydan C, Foox J, Butler D, Kim J, May B, De Freitas JK, Glicksberg BS, Mason CE, Tatonetti NP, Shapira SD. Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection. Nature Medicine. PMID 32747830 DOI: 10.1038/S41591-020-1021-2  0.336
2020 Charney AW, Simons NW, Mouskas K, Lepow L, Cheng E, Le Berichel J, Chang C, Marvin R, Del Valle DM, Calorossi S, Lansky A, Walker L, Patel M, Xie H, Yi N, ... ... Glicksberg BS, et al. Sampling the host response to SARS-CoV-2 in hospitals under siege. Nature Medicine. PMID 32719485 DOI: 10.1038/S41591-020-1004-3  0.717
2020 Landi I, Glicksberg BS, Lee HC, Cherng S, Landi G, Danieletto M, Dudley JT, Furlanello C, Miotto R. Deep representation learning of electronic health records to unlock patient stratification at scale. Npj Digital Medicine. 3: 96. PMID 32699826 DOI: 10.1038/s41746-020-0301-z  0.678
2020 Lee HC, Ichikawa O, Glicksberg BS, Divaraniya AA, Becker CE, Agarwal P, Dudley JT. Identification of therapeutic targets from genetic association studies using hierarchical component analysis. Biodata Mining. 13: 6. PMID 32565911 DOI: 10.1186/S13040-020-00216-9  0.768
2020 Lala A, Johnson KW, Januzzi JL, Russak AJ, Paranjpe I, Richter F, Zhao S, Somani S, Van Vleck T, Vaid A, Chaudhry F, De Freitas JK, Fayad ZA, Pinney SP, Levin M, ... ... Glicksberg BS, et al. Prevalence and Impact of Myocardial Injury in Patients Hospitalized with COVID-19 Infection. Journal of the American College of Cardiology. PMID 32517963 DOI: 10.1016/J.Jacc.2020.06.007  0.749
2020 Lala A, Johnson KW, Russak AJ, Paranjpe I, Zhao S, Solani S, Vaid A, Chaudhry F, De Freitas JK, Fayad ZA, Pinney SP, Levin M, Charney A, Bagiella E, Narula J, ... Glicksberg BS, et al. Prevalence and Impact of Myocardial Injury in Patients Hospitalized with COVID-19 Infection. Medrxiv : the Preprint Server For Health Sciences. PMID 32511658 DOI: 10.1101/2020.04.20.20072702  0.735
2020 Paranjpe I, Russak A, De Freitas JK, Lala A, Miotto R, Vaid A, Johnson KW, Danieletto M, Golden E, Meyer D, Singh M, Somani S, Manna S, Nangia U, Kapoor A, ... ... Glicksberg BS, et al. Clinical Characteristics of Hospitalized Covid-19 Patients in New York City. Medrxiv : the Preprint Server For Health Sciences. PMID 32511655 DOI: 10.1101/2020.04.19.20062117  0.748
2020 Chan L, Chaudhary K, Saha A, Chauhan K, Vaid A, Baweja M, Campbell K, Chun N, Chung M, Deshpande P, Farouk SS, Kaufman L, Kim T, Koncicki H, Lapsia V, ... ... Glicksberg BS, et al. Acute Kidney Injury in Hospitalized Patients with COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 32511564 DOI: 10.1101/2020.05.04.20090944  0.321
2020 Russak AJ, Chaudhry F, De Freitas JK, Baron G, Chaudhry FF, Bienstock S, Paranjpe I, Vaid A, Ali M, Zhao S, Somani S, Richter F, Bawa T, Levy PD, Miotto R, ... ... Glicksberg BS, et al. Machine Learning in Cardiology-Ensuring Clinical Impact Lives Up to the Hype. Journal of Cardiovascular Pharmacology and Therapeutics. 1074248420928651. PMID 32495652 DOI: 10.1177/1074248420928651  0.771
2020 Paranjpe I, Fuster V, Lala A, Russak A, Glicksberg BS, Levin MA, Charney AW, Narula J, Fayad ZA, Bagiella E, Zhao S, Nadkarni GN. Association of Treatment Dose Anticoagulation with In-Hospital Survival Among Hospitalized Patients with COVID-19. Journal of the American College of Cardiology. PMID 32387623 DOI: 10.1016/J.Jacc.2020.05.001  0.324
2020 Norgeot B, Muenzen K, Peterson TA, Fan X, Glicksberg BS, Schenk G, Rutenberg E, Oskotsky B, Sirota M, Yazdany J, Schmajuk G, Ludwig D, Goldstein T, Butte AJ. Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes. Npj Digital Medicine. 3: 57. PMID 32337372 DOI: 10.1038/s41746-020-0258-y  0.623
2020 Rudrapatna VA, Glicksberg BS, Avila P, Harding-Theobald E, Wang C, Butte AJ. Accuracy of medical billing data against the electronic health record in the measurement of colorectal cancer screening rates. Bmj Open Quality. 9. PMID 32209595 DOI: 10.1136/bmjoq-2019-000856  0.563
2020 Glicksberg BS, Burns S, Currie R, Griffin A, Wang ZJ, Haussler D, Goldstein T, Collisson E. Blockchain-Authenticated Sharing of Genomic and Clinical Outcomes Data of Patients With Cancer: A Prospective Cohort Study. Journal of Medical Internet Research. 22: e16810. PMID 32196460 DOI: 10.2196/16810  0.335
2020 Chaudhry FF, Danieletto M, Golden E, Scelza J, Botwin G, Shervey M, De Freitas JK, Paranjpe I, Nadkarni GN, Miotto R, Glowe P, Stock G, Percha B, Zimmerman N, Dudley JT, ... Glicksberg BS, et al. Sleep in the Natural Environment: A Pilot Study. Sensors (Basel, Switzerland). 20. PMID 32138289 DOI: 10.3390/S20051378  0.605
2020 Miotto R, Percha BL, Glicksberg BS, Lee HC, Cruz L, Dudley JT, Nabeel I. Identifying Acute Low Back Pain Episodes in Primary Care Practice From Clinical Notes: Observational Study. Jmir Medical Informatics. 8: e16878. PMID 32130159 DOI: 10.2196/16878  0.647
2019 Glicksberg BS, Amadori L, Akers NK, Sukhavasi K, Franzén O, Li L, Belbin GM, Ayers KL, Shameer K, Badgeley MA, Johnson KW, Readhead B, Darrow BJ, Kenny EE, Betsholtz C, et al. Correction to: Integrative analysis of loss-of-function variants in clinical and genomic data reveals novel genes associated with cardiovascular traits. Bmc Medical Genomics. 12: 154. PMID 31684948 DOI: 10.1186/s12920-019-0573-9  0.779
2019 Glicksberg BS, Oskotsky B, Giangreco N, Thangaraj PM, Rudrapatna V, Datta D, Frazier R, Lee N, Larsen R, Tatonetti NP, Butte AJ. ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data. Jamia Open. 2: 10-14. PMID 31633087 DOI: 10.1093/jamiaopen/ooy059  0.585
2019 Glicksberg BS, Amadori L, Akers NK, Sukhavasi K, Franzén O, Li L, Belbin GM, Akers KL, Shameer K, Badgeley MA, Johnson KW, Readhead B, Darrow BJ, Kenny EE, Betsholtz C, et al. Integrative analysis of loss-of-function variants in clinical and genomic data reveals novel genes associated with cardiovascular traits. Bmc Medical Genomics. 12: 108. PMID 31345219 DOI: 10.1186/S12920-019-0542-3  0.788
2019 Badgeley MA, Zech JR, Oakden-Rayner L, Glicksberg BS, Liu M, Gale W, McConnell MV, Percha B, Snyder TM, Dudley JT. Deep learning predicts hip fracture using confounding patient and healthcare variables. Npj Digital Medicine. 2: 31. PMID 31304378 DOI: 10.1038/s41746-019-0105-1  0.622
2019 Glicksberg BS, Oskotsky B, Thangaraj PM, Giangreco N, Badgeley MA, Johnson KW, Datta D, Rudrapatna V, Rappoport N, Shervey MM, Miotto R, Goldstein TC, Rutenberg E, Frazier R, Lee N, et al. PatientExploreR: an extensible application for dynamic visualization of patient clinical history from Electronic Health Records in the OMOP Common Data Model Title. Bioinformatics (Oxford, England). PMID 31214700 DOI: 10.1093/Bioinformatics/Btz409  0.778
2019 Liu AC, Patel K, Vunikili RD, Johnson KW, Abdu F, Belman SK, Glicksberg BS, Tandale P, Fontanez R, Mathew OK, Kasarskis A, Mukherjee P, Subramanian L, Dudley JT, Shameer K. Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses. Briefings in Bioinformatics. PMID 31190075 DOI: 10.1093/Bib/Bbz059  0.799
2019 Johnson KW, Glicksberg BS, Shameer K, Vengrenyuk Y, Krittanawong C, Russak AJ, Sharma SK, Narula JN, Dudley JT, Kini AS. A transcriptomic model to predict increase in fibrous cap thickness in response to high-dose statin treatment: Validation by serial intracoronary OCT imaging. Ebiomedicine. PMID 31126891 DOI: 10.1016/J.Ebiom.2019.05.007  0.778
2019 Han BA, Majumdar S, Calmon FP, Glicksberg BS, Horesh R, Kumar A, Perer A, von Marschall EB, Wei D, Mojsilović A, Varshney KR. Confronting data sparsity to identify potential sources of Zika virus spillover infection among primates. Epidemics. PMID 30902616 DOI: 10.1016/J.Epidem.2019.01.005  0.33
2019 Norgeot B, Glicksberg BS, Trupin L, Lituiev D, Gianfrancesco M, Oskotsky B, Schmajuk G, Yazdany J, Butte AJ. Assessment of a Deep Learning Model Based on Electronic Health Record Data to Forecast Clinical Outcomes in Patients With Rheumatoid Arthritis. Jama Network Open. 2: e190606. PMID 30874779 DOI: 10.1001/jamanetworkopen.2019.0606  0.609
2019 Ichikawa O, Glicksberg BS, Genes N, Kidd BA, Li L, Dudley JT. Lyme Disease Patient Trajectories Learned from Electronic Medical Data for Stratification of Disease Risk and Therapeutic Response. Scientific Reports. 9: 4460. PMID 30872757 DOI: 10.1038/S41598-019-41128-X  0.696
2019 Johnson KW, De Freitas JK, Glicksberg BS, Bobe JR, Dudley JT. Evaluation of patient re-identification using laboratory test orders and mitigation via latent space variables. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 24: 415-426. PMID 30864342  0.783
2019 Glicksberg BS, Li L, Chen R, Dudley J, Chen B. Leveraging Big Data to Transform Drug Discovery. Methods in Molecular Biology (Clifton, N.J.). 1939: 91-118. PMID 30848458 DOI: 10.1007/978-1-4939-9089-4_6  0.675
2019 Norgeot B, Glicksberg BS, Butte AJ. A call for deep-learning healthcare. Nature Medicine. 25: 14-15. PMID 30617337 DOI: 10.1038/S41591-018-0320-3  0.613
2019 Rudrapatna V, Glicksberg B, Avila P, Harding-Theobald E, Wang C, Butte A. Tu1650 – Accuracy of Electronic Health Record Billing Data in the Measurement of Colorectal Cancer Screening Rates Gastroenterology. 156: S-1075-S-1076. DOI: 10.1016/S0016-5085(19)39654-4  0.592
2018 Badgeley MA, Liu M, Glicksberg BS, Shervey M, Zech J, Shameer K, Lehar J, Oermann EK, McConnell MV, Snyder TM, Dudley JT. CANDI: an R package and Shiny app for annotating radiographs and evaluating Computer-Aided Diagnosis. Bioinformatics (Oxford, England). PMID 30304439 DOI: 10.1093/Bioinformatics/Bty855  0.635
2018 Shameer K, Perez-Rodriguez MM, Bachar R, Li L, Johnson A, Johnson KW, Glicksberg BS, Smith MR, Readhead B, Scarpa J, Jebakaran J, Kovatch P, Lim S, Goodman W, Reich DL, et al. Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining. Bmc Medical Informatics and Decision Making. 18: 79. PMID 30255805 DOI: 10.1186/S12911-018-0653-3  0.77
2018 Hu Z, Glicksberg BS, Butte AJ. Robust prediction of clinical outcomes using cytometry data. Bioinformatics (Oxford, England). PMID 30169745 DOI: 10.1093/Bioinformatics/Bty768  0.628
2018 Shameer K, Johnson KW, Glicksberg BS, Dudley JT, Sengupta PP. The whole is greater than the sum of its parts: combining classical statistical and machine intelligence methods in medicine. Heart (British Cardiac Society). 104: 1228. PMID 29945951 DOI: 10.1136/Heartjnl-2018-313377  0.77
2018 Shameer K, Dow G, Glicksberg BS, Johnson KW, Ze Y, Tomlinson MS, Readhead B, Dudley JT, Kullo IJ. A Network-Biology Informed Computational Drug Repositioning Strategy to Target Disease Risk Trajectories and Comorbidities of Peripheral Artery Disease. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2017: 108-117. PMID 29888052  0.792
2018 Johnson KW, Torres Soto J, Glicksberg BS, Shameer K, Miotto R, Ali M, Ashley E, Dudley JT. Artificial Intelligence in Cardiology. Journal of the American College of Cardiology. 71: 2668-2679. PMID 29880128 DOI: 10.1016/J.Jacc.2018.03.521  0.779
2018 Patel R, Scheinfeldt LB, Sanderford MD, Lanham TR, Tamura K, Platt A, Glicksberg BS, Xu K, Dudley JT, Kumar S. Adaptive landscape of protein variation in human exomes. Molecular Biology and Evolution. PMID 29846678 DOI: 10.1093/Molbev/Msy107  0.633
2018 Ayers KL, Glicksberg BS, Garfield AS, Longerich S, White JA, Yang P, Du L, Chittenden TW, Gulcher JR, Roy S, Fiedorek F, Gottesdiener K, Cohen S, North KE, Schadt EE, et al. Melanocortin-4 receptor pathway dysfunction in obesity: Patient stratification aimed at MC4R agonist treatment. The Journal of Clinical Endocrinology and Metabolism. PMID 29726959 DOI: 10.1210/Jc.2018-00258  0.35
2018 Glicksberg BS, Johnson KW, Dudley JT. The next generation of precision medicine: observational studies, electronic health records, biobanks, and continuous monitoring. Human Molecular Genetics. PMID 29659828 DOI: 10.1093/Hmg/Ddy114  0.79
2018 Shameer K, Johnson KW, Glicksberg BS, Dudley JT, Sengupta PP. Machine learning in cardiovascular medicine: are we there yet? Heart (British Cardiac Society). PMID 29352006 DOI: 10.1136/Heartjnl-2017-311198  0.78
2018 Johnson KW, Glicksberg BS, Hodos RA, Shameer K, Dudley JT. Causal inference on electronic health records to assess blood pressure treatment targets: an application of the parametric g formula. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 180-191. PMID 29218880  0.759
2018 Glicksberg BS, Miotto R, Johnson KW, Shameer K, Li L, Chen R, Dudley JT. Automated disease cohort selection using word embeddings from Electronic Health Records. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 145-156. PMID 29218877  0.793
2018 Smith MR, Glicksberg BS, Li L, Chen R, Morishita H, Dudley JT. Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 68-79. PMID 29218870  0.772
2018 Gianfrancesco MA, Glicksberg BS, Dahl A, Lanata C, Kay J, Nititham J, Taylor K, Paranjpe I, Zaitlen N, Sirota M, Criswell L, Schmajuk G, Yazdany J. BD-06 Identification of systemic lupus erythematosus subgroups using electronic health record and genetic databases Lupus Science & Medicine. 5. DOI: 10.1136/Lupus-2018-Lsm.30  0.351
2018 Johnson K, Khader S, Glicksberg BS, Vengrenyuk Y, Divaraniya AA, Li L, Sharma SK, Narula J, Dudley J, Kini AS. A MACHINE LEARNING MODEL PREDICTS INDIVIDUALS WHO IMPROVE CORONARY ARTERY PLAQUE FIBROUS CAP THICKNESS FOLLOWING HIGH-INTENSITY STATIN THERAPY Journal of the American College of Cardiology. 71: A1348. DOI: 10.1016/S0735-1097(18)31889-8  0.774
2017 Johnson KW, Shameer K, Glicksberg BS, Readhead B, Sengupta PP, Björkegren JLM, Kovacic JC, Dudley JT. Enabling Precision Cardiology Through Multiscale Biology and Systems Medicine. Jacc. Basic to Translational Science. 2: 311-327. PMID 30062151 DOI: 10.1016/J.Jacbts.2016.11.010  0.801
2017 Wang Z, Li L, Glicksberg BS, Israel A, Dudley JT, Ma'ayan A. Predicting Age by Mining Electronic Medical Records with Deep Learning Characterizes Differences between Chronological and Physiological Age. Journal of Biomedical Informatics. PMID 29113935 DOI: 10.1016/J.Jbi.2017.11.003  0.65
2017 Belbin GM, Odgis J, Sorokin EP, Yee MC, Kohli S, Glicksberg BS, Gignoux CR, Wojcik GL, Van Vleck T, Jeff JM, Linderman M, Schurmann C, Ruderfer D, Cai X, Merkelson A, et al. Genetic identification of a common collagen disease in puerto ricans via identity-by-descent mapping in a health system. Elife. 6. PMID 28895531 DOI: 10.7554/Elife.25060  0.359
2017 Chamaria S, Johnson KW, Vengrenyuk Y, Baber U, Shameer K, Divaraniya AA, Glicksberg BS, Li L, Bhatheja S, Moreno P, Maehara A, Mehran R, Dudley JT, Narula J, Sharma SK, et al. Intracoronary Imaging, Cholesterol Efflux, and Transcriptomics after Intensive Statin Treatment in Diabetes. Scientific Reports. 7: 7001. PMID 28765529 DOI: 10.1038/S41598-017-07029-7  0.753
2017 Shameer K, Glicksberg BS, Hodos R, Johnson KW, Badgeley MA, Readhead B, Tomlinson MS, O'Connor T, Miotto R, Kidd BA, Chen R, Ma'ayan A, Dudley JT. Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning. Briefings in Bioinformatics. PMID 28200013 DOI: 10.1093/Bib/Bbw136  0.762
2017 Shameer K, Yadav KK, Li L, Yadav SS, Glicksberg B, Khan I, Johnson KW, Badgeley MA, Elaiho C, Readhead B, Kidd BA, Kasarskis A, Dudley JT, Tewari AK. Abstract 3772: A multi-scale survey to assess the impact of inflammatory diseases of the abdominal cavity and prostate cancer severity Cancer Research. 77: 3772-3772. DOI: 10.1158/1538-7445.Am2017-3772  0.748
2017 Yadav KK, Shameer K, Readhead B, Stockert JA, Elaiho C, Yadav SS, Glicksberg BS, Johnson KW, Becker C, Kasarskis A, Tewari AK, Dudley JT. Abstract 3250: Computational drug repositioning and biochemical validation of piperlongumine as a potent therapeutic agent for neuroendocrine prostate cancer Cancer Research. 77: 3250-3250. DOI: 10.1158/1538-7445.Am2017-3250  0.734
2017 Kini AS, Shameer K, Vengrenyuk Y, Glicksberg B, Johnson K, Divaraniya A, Readhead B, Purushothaman M, Kidd B, Sharma S, Narula J, Dudley J. INVESTIGATION OF NOVEL DRUG TARGETS IMPLICATED IN HIGH-DOSE STATIN THERAPY FROM YELLOW-II TRIAL: TOWARDS PERSONALIZED LIPID LOWERING THERAPIES Journal of the American College of Cardiology. 69: 977. DOI: 10.1016/S0735-1097(17)34366-8  0.76
2017 Yadav KK, Shameer K, Yadav SS, Elaiho C, Li L, O'Connor J, Glicksberg B, Jhonson K, Badgeley M, Readhead B, Kidd B, Kasarskis A, Dudley J, Tewari A. MP14-08 A MULTISCALE SURVEY OF INFLAMMATORY DISEASES AND PROSTATE ONCOPHENOTYPES. Journal of Urology. 197. DOI: 10.1016/J.Juro.2017.02.472  0.619
2016 Ayers KL, Mirshahi UL, Wardeh AH, Murray MF, Hao K, Glicksberg BS, Li S, Carey DJ, Chen R. A loss of function variant in CASP7 protects against Alzheimer's disease in homozygous APOE ε4 allele carriers. Bmc Genomics. 17: 445. PMID 27358062 DOI: 10.1186/S12864-016-2725-Z  0.402
2016 Glicksberg BS, Li L, Badgeley MA, Shameer K, Kosoy R, Beckmann ND, Pho N, Hakenberg J, Ma M, Ayers KL, Hoffman GE, Dan Li S, Schadt EE, Patel CJ, Chen R, et al. Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. Bioinformatics (Oxford, England). 32: i101-i110. PMID 27307606 DOI: 10.1093/Bioinformatics/Btw282  0.68
2016 Uzilov AV, Ding W, Fink MY, Antipin Y, Brohl AS, Davis C, Lau CY, Pandya C, Shah H, Kasai Y, Powell J, Micchelli M, Castellanos R, Zhang Z, Linderman M, ... ... Glicksberg BS, et al. Development and clinical application of an integrative genomic approach to personalized cancer therapy. Genome Medicine. 8: 62. PMID 27245685 DOI: 10.1186/S13073-016-0313-0  0.672
2016 Li L, Lee NJ, Glicksberg BS, Radbill BD, Dudley JT. Data-Driven Identification of Risk Factors of Patient Satisfaction at a Large Urban Academic Medical Center. Plos One. 11: e0156076. PMID 27228056 DOI: 10.1371/Journal.Pone.0156076  0.68
2016 Badgeley MA, Shameer K, Glicksberg BS, Tomlinson MS, Levin MA, McCormick PJ, Kasarskis A, Reich DL, Dudley JT. EHDViz: clinical dashboard development using open-source technologies. Bmj Open. 6: e010579. PMID 27013597 DOI: 10.1136/Bmjopen-2015-010579  0.647
2016 Shameer K, Badgeley MA, Miotto R, Glicksberg BS, Morgan JW, Dudley JT. Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams. Briefings in Bioinformatics. PMID 26876889 DOI: 10.1093/Bib/Bbv118  0.678
2015 Li L, Cheng WY, Glicksberg BS, Gottesman O, Tamler R, Chen R, Bottinger EP, Dudley JT. Identification of type 2 diabetes subgroups through topological analysis of patient similarity. Science Translational Medicine. 7: 311ra174. PMID 26511511 DOI: 10.1126/Scitranslmed.Aaa9364  0.707
2015 Ma M, Ru Y, Chuang LS, Hsu NY, Shi LS, Hakenberg J, Cheng WY, Uzilov A, Ding W, Glicksberg BS, Chen R. Disease-associated variants in different categories of disease located in distinct regulatory elements. Bmc Genomics. 16: S3. PMID 26110593 DOI: 10.1186/1471-2164-16-S8-S3  0.423
2015 Glicksberg BS, Li L, Cheng WY, Shameer K, Hakenberg J, Castellanos R, Ma M, Shi L, Shah H, Dudley JT, Chen R. An integrative pipeline for multi-modal discovery of disease relationships. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 407-18. PMID 25592600  0.685
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