Orkid Coskuner - Publications

Affiliations: 
Turkish-German University 
Area:
proteins, metals, saccharides

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Coskuner O, Uversky VN. Intrinsically disordered proteins in various hypotheses on the pathogenesis of Alzheimer's and Parkinson's diseases. Progress in Molecular Biology and Translational Science. 166: 145-223. PMID 31521231 DOI: 10.1016/Bs.Pmbts.2019.05.007  0.399
2017 Coskuner O, Uversky VN. BMP-2 and BMP-9 binding specificities with ALK-3 in aqueous solution with dynamics. Journal of Molecular Graphics & Modelling. 77: 181-188. PMID 28869862 DOI: 10.1016/J.Jmgm.2017.08.005  0.384
2017 Coskuner O, Uversky VN. Tyrosine Regulates β-Sheet Structure Formation in Amyloid-β42: A New Clustering Algorithm for Disordered Proteins. Journal of Chemical Information and Modeling. PMID 28474890 DOI: 10.1021/Acs.Jcim.6B00761  0.502
2016 Coskuner O. Divalent copper ion bound amyloid-β(40) and amyloid-β(42) alloforms are less preferred than divalent zinc ion bound amyloid-β(40) and amyloid-β(42) alloforms. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. PMID 27659954 DOI: 10.1007/S00775-016-1392-5  0.424
2014 Wise O, Coskuner O. New force field parameters for metalloproteins I: Divalent copper ion centers including three histidine residues and an oxygen-ligated amino acid residue. Journal of Computational Chemistry. 35: 1278-89. PMID 24777820 DOI: 10.1002/Jcc.23622  0.677
2014 Coskuner O, Murray IV. Adenosine triphosphate (ATP) reduces amyloid-β protein misfolding in vitro. Journal of Alzheimer's Disease : Jad. 41: 561-74. PMID 24625803 DOI: 10.3233/Jad-132300  0.371
2013 Coskuner O, Wise-Scira O. Arginine and disordered amyloid-β peptide structures: molecular level insights into the toxicity in Alzheimer's disease. Acs Chemical Neuroscience. 4: 1549-58. PMID 24041422 DOI: 10.1021/Cn4001389  0.47
2013 Coskuner O, Wise-Scira O. Structures and free energy landscapes of the A53T mutant-type α-synuclein protein and impact of A53T mutation on the structures of the wild-type α-synuclein protein with dynamics. Acs Chemical Neuroscience. 4: 1101-13. PMID 23607785 DOI: 10.1021/Cn400041J  0.498
2013 Coskuner O, Wise-Scira O, Perry G, Kitahara T. The structures of the E22Δ mutant-type amyloid-β alloforms and the impact of E22Δ mutation on the structures of the wild-type amyloid-β alloforms. Acs Chemical Neuroscience. 4: 310-20. PMID 23421682 DOI: 10.1021/Cn300149J  0.598
2013 Wise-Scira O, Dunn A, Aloglu AK, Sakallioglu IT, Coskuner O. Structures of the E46K mutant-type α-synuclein protein and impact of E46K mutation on the structures of the wild-type α-synuclein protein. Acs Chemical Neuroscience. 4: 498-508. PMID 23374074 DOI: 10.1021/Cn3002027  0.483
2013 Wise-Scira O, Aloglu AK, Dunn A, Sakallioglu IT, Coskuner O. Structures and free energy landscapes of the wild-type and A30P mutant-type α-synuclein proteins with dynamics. Acs Chemical Neuroscience. 4: 486-97. PMID 23374072 DOI: 10.1021/Cn300198Q  0.445
2012 Fawver JN, Duong KT, Wise-Scira O, Petrofes Chapa R, Schall HE, Coskuner O, Zhu X, Colom LV, Murray IV. Probing and trapping a sensitive conformation: amyloid-β fibrils, oligomers, and dimers. Journal of Alzheimer's Disease : Jad. 32: 197-215. PMID 22785403 DOI: 10.3233/Jad-2012-120880  0.392
2012 Wise-Scira O, Xu L, Perry G, Coskuner O. Structures and free energy landscapes of aqueous zinc(II)-bound amyloid-β(1-40) and zinc(II)-bound amyloid-β(1-42) with dynamics. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 17: 927-38. PMID 22674434 DOI: 10.1007/S00775-012-0909-9  0.445
2011 Wise-Scira O, Xu L, Kitahara T, Perry G, Coskuner O. Amyloid-β peptide structure in aqueous solution varies with fragment size. The Journal of Chemical Physics. 135: 205101. PMID 22128957 DOI: 10.1063/1.3662490  0.6
2009 Coskuner O, Allison TC. Dynamic and structural properties of aqueous arsenic solutions. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 1187-9. PMID 19308977 DOI: 10.1002/Cphc.200800650  0.338
2009 Coskuner O, Bergeron DE, Rincon L, Hudgens JW, Gonzalez CA. Identification of active sites of biomolecules II: Saccharide and transition metal ion in aqueous solution. The Journal of Physical Chemistry. A. 113: 2491-9. PMID 19236000 DOI: 10.1021/Jp805747F  0.494
2008 Coskuner O, Bergeron DE, Rincon L, Hudgens JW, Gonzalez CA. Glycosidic linkage conformation of methyl-alpha-mannopyranoside. The Journal of Chemical Physics. 129: 045102. PMID 18681681 DOI: 10.1063/1.2958916  0.486
2008 Coskuner O, Bergeron DE, Rincon L, Hudgens JW, Gonzalez CA. Identification of active sites of biomolecules. 1. Methyl-alpha-mannopyranoside and Fe(III). The Journal of Physical Chemistry. A. 112: 2940-7. PMID 18302355 DOI: 10.1021/Jp711759Q  0.509
2007 Coskuner O. Preferred conformation of the glycosidic linkage of methyl-beta-mannose. The Journal of Chemical Physics. 127: 015101. PMID 17627368 DOI: 10.1063/1.2747238  0.348
2007 Coskuner O, Deiters UK. Hydrophobic interactions of xenon by Monte Carlo simulations Zeitschrift Fur Physikalische Chemie. 221: 785-799. DOI: 10.1524/Zpch.2007.221.6.785  0.567
2006 Coskuner O, Deiters UK. Hydrophobic interactions by Monte Carlo simulations Zeitschrift Fur Physikalische Chemie. 220: 349-369. DOI: 10.1524/Zpch.2006.220.3.349  0.57
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