| Year |
Citation |
Score |
| 2023 |
Bačić Toplek F, Scalone E, Stegani B, Paissoni C, Capelli R, Camilloni C. Multi-GO: Model Improvements toward the Study of Complex Self-Assembly Processes. Journal of Chemical Theory and Computation. 20: 459-468. PMID 38153340 DOI: 10.1021/acs.jctc.3c01182 |
0.346 |
|
| 2023 |
Ballabio F, Paissoni C, Bollati M, de Rosa M, Capelli R, Camilloni C. Accurate and Efficient SAXS/SANS Implementation Including Solvation Layer Effects Suitable for Molecular Simulations. Journal of Chemical Theory and Computation. PMID 37923304 DOI: 10.1021/acs.jctc.3c00864 |
0.344 |
|
| 2023 |
Olivieri C, Wang Y, Walker C, Subrahmanian MV, Ha KN, Bernlohr DA, Gao J, Camilloni C, Vendruscolo M, Taylor SS, Veglia G. The αC-β4 loop controls the allosteric cooperativity between nucleotide and substrate in the catalytic subunit of protein kinase A. Biorxiv : the Preprint Server For Biology. PMID 37745542 DOI: 10.1101/2023.09.12.557419 |
0.507 |
|
| 2022 |
Olivieri C, Li GC, Wang Y, V S M, Walker C, Kim J, Camilloni C, De Simone A, Vendruscolo M, Bernlohr DA, Taylor SS, Veglia G. ATP-competitive inhibitors modulate the substrate binding cooperativity of a kinase by altering its conformational entropy. Science Advances. 8: eabo0696. PMID 35905186 DOI: 10.1126/sciadv.abo0696 |
0.409 |
|
| 2022 |
Scalone E, Broggini L, Visentin C, Erba D, Bačić Toplek F, Peqini K, Pellegrino S, Ricagno S, Paissoni C, Camilloni C. Multi-GO: An in silico lens to look into protein aggregation kinetics at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 119: e2203181119. PMID 35737839 DOI: 10.1073/pnas.2203181119 |
0.37 |
|
| 2022 |
Löhr T, Kohlhoff K, Heller GT, Camilloni C, Vendruscolo M. A Small Molecule Stabilizes the Disordered Native State of the Alzheimer's Aβ Peptide. Acs Chemical Neuroscience. 13: 1738-1745. PMID 35649268 DOI: 10.1021/acschemneuro.2c00116 |
0.785 |
|
| 2021 |
Löhr T, Kohlhoff K, Heller GT, Camilloni C, Vendruscolo M. A kinetic ensemble of the Alzheimer's Aβ peptide. Nature Computational Science. 1: 71-78. PMID 38217162 DOI: 10.1038/s43588-020-00003-w |
0.803 |
|
| 2021 |
Paissoni C, Puri S, Wang I, Chen SY, Camilloni C, Hsu SD. Converging experimental and computational views of the knotting mechanism of a small knotted protein. Biophysical Journal. PMID 33812848 DOI: 10.1016/j.bpj.2021.03.032 |
0.344 |
|
| 2020 |
Heller GT, Aprile FA, Michaels TCT, Limbocker R, Perni M, Ruggeri FS, Mannini B, Löhr T, Bonomi M, Camilloni C, De Simone A, Felli IC, Pierattelli R, Knowles TPJ, Dobson CM, et al. Small-molecule sequestration of amyloid-β as a drug discovery strategy for Alzheimer's disease. Science Advances. 6. PMID 33148639 DOI: 10.1126/sciadv.abb5924 |
0.6 |
|
| 2020 |
Sala BM, Le Marchand T, Pintacuda G, Camilloni C, Natalello A, Ricagno S. Conformational Stability and Dynamics in Crystals Recapitulate Protein Behavior in Solution. Biophysical Journal. 119: 978-988. PMID 32758421 DOI: 10.1016/J.Bpj.2020.07.015 |
0.475 |
|
| 2020 |
Mangiagalli M, Lapi M, Maione S, Orlando M, Brocca S, Pesce A, Barbiroli A, Camilloni C, Pucciarelli S, Lotti M, Nardini M. The co-existence of cold activity and thermal stability in an Antarctic GH42 β-galactosidase relies on its hexametric quaternary arrangement. The Febs Journal. PMID 32363751 DOI: 10.1111/Febs.15354 |
0.317 |
|
| 2020 |
Paissoni C, Jussupow A, Camilloni C. Determination of Protein Structural Ensembles by Hybrid-Resolution SAXS Restrained Molecular Dynamics. Journal of Chemical Theory and Computation. PMID 32119546 DOI: 10.1021/Acs.Jctc.9B01181 |
0.438 |
|
| 2019 |
Niu Z, Prade E, Malideli E, Hille K, Jussupow A, Mideksa Y, Yan LM, Qian C, Fleisch M, Messias AC, Sarkar R, Sattler M, Lamb DC, Feige MJ, Camilloni C, et al. Structural insight into IAPP-derived amyloid inhibitors and their mechanism of action. Angewandte Chemie (International Ed. in English). PMID 31863711 DOI: 10.1002/Anie.201914559 |
0.406 |
|
| 2019 |
Achour A, Broggini L, Han X, Sun R, Santambrogio C, Buratto J, Visentin C, Barbiroli A, De Luca CMG, Sormanni P, Moda F, De Simone A, Sandalova T, Grandori R, Camilloni C, et al. Biochemical and biophysical comparison of human and mouse beta-2 microglobulin reveals the molecular determinants of low amyloid propensity. The Febs Journal. PMID 31420997 DOI: 10.1111/Febs.15046 |
0.374 |
|
| 2019 |
Löhr T, Camilloni C, Bonomi M, Vendruscolo M. A Practical Guide to the Simultaneous Determination of Protein Structure and Dynamics Using Metainference. Methods in Molecular Biology (Clifton, N.J.). 2022: 313-340. PMID 31396909 DOI: 10.1007/978-1-4939-9608-7_13 |
0.625 |
|
| 2019 |
Bonomi M, Bussi G, Camilloni C, Tribello GA, Banáš P, Barducci A, Bernetti M, Bolhuis PG, Bottaro S, Branduardi D, Capelli R, Carloni P, Ceriotti M, Cesari A, Chen H, et al. Promoting transparency and reproducibility in enhanced molecular simulations Nature Methods. 16: 670-673. PMID 31363226 DOI: 10.1038/S41592-019-0506-8 |
0.51 |
|
| 2019 |
Swuec P, Lavatelli F, Tasaki M, Paissoni C, Rognoni P, Maritan M, Brambilla F, Milani P, Mauri P, Camilloni C, Palladini G, Merlini G, Ricagno S, Bolognesi M. Cryo-EM structure of cardiac amyloid fibrils from an immunoglobulin light chain AL amyloidosis patient. Nature Communications. 10: 1269. PMID 30894521 DOI: 10.2210/Pdb6Hud/Pdb |
0.309 |
|
| 2019 |
Paissoni C, Jussupow A, Camilloni C. Martini bead form factors for nucleic acids and their application in the refinement of protein–nucleic acid complexes against SAXS data Journal of Applied Crystallography. 52: 394-402. DOI: 10.1107/S1600576719002450 |
0.377 |
|
| 2019 |
Heller GT, Aprile FA, Bonomi M, Camilloni C, De Simone A, Vendruscolo M. Probing Specificity in Disordered Protein Interactions with Small Molecules using Integrative Methods Biophysical Journal. 116: 180a. DOI: 10.1016/J.Bpj.2018.11.998 |
0.529 |
|
| 2019 |
Camilloni C. Integrative Methods for Protein Dynamics and Aggregation Biophysical Journal. 116: 50a. DOI: 10.1016/J.Bpj.2018.11.313 |
0.388 |
|
| 2018 |
Marinho da Silva Neto A, Silva SR, Vendruscolo M, Camilloni C, Montalvao RW. A superposition free method for protein conformational ensemble analyses and local clustering based on a differential geometry representation of backbone. Proteins. PMID 30582223 DOI: 10.1002/Prot.25652 |
0.587 |
|
| 2018 |
Karlsson E, Andersson E, Dogan J, Gianni S, Jemth P, Camilloni C. A structurally heterogeneous transition state underlies coupled binding and folding of disordered proteins. The Journal of Biological Chemistry. PMID 30514761 DOI: 10.1074/Jbc.Ra118.005854 |
0.482 |
|
| 2018 |
Weber B, Hora M, Kazman P, Göbl C, Camilloni C, Reif B, Buchner J. The Antibody Light-Chain Linker Regulates Domain Orientation and Amyloidogenicity. Journal of Molecular Biology. PMID 30414962 DOI: 10.1016/J.Jmb.2018.10.024 |
0.351 |
|
| 2018 |
Waudby CA, Wlodarski T, Karyadi ME, Cassaignau AME, Chan SHS, Wentink AS, Schmidt-Engler JM, Camilloni C, Vendruscolo M, Cabrita LD, Christodoulou J. Systematic mapping of free energy landscapes of a growing filamin domain during biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201720 DOI: 10.1073/Pnas.1716252115 |
0.58 |
|
| 2018 |
Troilo F, Bonetti D, Camilloni C, Toto A, Longhi S, Brunori M, Gianni S. Folding Mechanism of the SH3 Domain from Grb2. The Journal of Physical Chemistry. B. PMID 30091591 DOI: 10.1021/Acs.Jpcb.8B06320 |
0.45 |
|
| 2018 |
Tomba G, Camilloni C, Vendruscolo M. Determination of the conformational states of strychnine using NMR residual dipolar couplings in a tensor-free approach. Methods (San Diego, Calif.). PMID 30036639 DOI: 10.1016/J.Ymeth.2018.07.005 |
0.606 |
|
| 2018 |
Papaleo E, Camilloni C, Teilum K, Vendruscolo M, Lindorff-Larsen K. Molecular dynamics ensemble refinement of the heterogeneous native state of NCBD using chemical shifts and NOEs. Peerj. 6: e5125. PMID 30013831 DOI: 10.7717/Peerj.5125 |
0.66 |
|
| 2018 |
Possenti A, Vendruscolo M, Camilloni C, Tiana G. A method for partitioning the information contained in a protein sequence between its structure and function. Proteins. PMID 29790601 DOI: 10.1002/Prot.25527 |
0.553 |
|
| 2018 |
Capelli R, Tiana G, Camilloni C. An implementation of the maximum-caliber principle by replica-averaged time-resolved restrained simulations. The Journal of Chemical Physics. 148: 184114. PMID 29764124 DOI: 10.1063/1.5030339 |
0.36 |
|
| 2018 |
Le Marchand T, de Rosa M, Salvi N, Sala BM, Andreas LB, Barbet-Massin E, Sormanni P, Barbiroli A, Porcari R, Sousa Mota C, de Sanctis D, Bolognesi M, Emsley L, Bellotti V, Blackledge M, ... Camilloni C, et al. Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity. Nature Communications. 9: 1658. PMID 29695721 DOI: 10.1038/S41467-018-04078-Y |
0.474 |
|
| 2017 |
Rodriguez Camargo DC, Korshavn KJ, Jussupow A, Raltchev K, Goricanec D, Fleisch M, Sarkar R, Xue K, Aichler M, Mettenleiter G, Walch AK, Camilloni C, Hagn F, Reif B, Ramamoorthy A. Stabilization and structural analysis of a membrane-associated hIAPP aggregation intermediate. Elife. 6. PMID 29148426 DOI: 10.7554/Elife.31226 |
0.356 |
|
| 2017 |
Piovesan D, Tabaro F, Paladin L, Necci M, Micetic I, Camilloni C, Davey N, Dosztányi Z, Mészáros B, Monzon AM, Parisi G, Schad E, Sormanni P, Tompa P, Vendruscolo M, et al. MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. Nucleic Acids Research. PMID 29136219 DOI: 10.1093/Nar/Gkx1071 |
0.603 |
|
| 2017 |
Bonomi M, Camilloni C. Integrative structural and dynamical biology with PLUMED-ISDB. Bioinformatics (Oxford, England). 33: 3999-4000. PMID 28961689 DOI: 10.1093/Bioinformatics/Btx529 |
0.435 |
|
| 2017 |
Heller GT, Aprile FA, Bonomi M, Camilloni C, De Simone A, Vendruscolo M. Sequence Specificity in the Entropy-Driven Binding of a Small Molecule and a Disordered Peptide. Journal of Molecular Biology. PMID 28743590 DOI: 10.1016/J.Jmb.2017.07.016 |
0.58 |
|
| 2017 |
Löhr T, Jussupow A, Camilloni C. Metadynamic metainference: Convergence towards force field independent structural ensembles of a disordered peptide. The Journal of Chemical Physics. 146: 165102. PMID 28456189 DOI: 10.1063/1.4981211 |
0.388 |
|
| 2017 |
Kukic P, Pustovalova Y, Camilloni C, Gianni S, Korzhnev DM, Vendruscolo M. Structural characterization of the early events in the nucleation-condensation mechanism in a protein folding process. Journal of the American Chemical Society. PMID 28401755 DOI: 10.1021/Jacs.7B01540 |
0.627 |
|
| 2017 |
Hultqvist G, Åberg E, Camilloni C, Sundell GN, Andersson E, Dogan J, Chi CN, Vendruscolo M, Jemth P. Emergence and evolution of an interaction between intrinsically disordered proteins. Elife. 6. PMID 28398197 DOI: 10.7554/Elife.16059 |
0.576 |
|
| 2017 |
Sormanni P, Piovesan D, Heller GT, Bonomi M, Kukic P, Camilloni C, Fuxreiter M, Dosztanyi Z, Pappu RV, Babu MM, Longhi S, Tompa P, Dunker AK, Uversky VN, Tosatto SC, et al. Simultaneous quantification of protein order and disorder. Nature Chemical Biology. 13: 339-342. PMID 28328918 DOI: 10.1038/Nchembio.2331 |
0.605 |
|
| 2017 |
Borkar AN, Vallurupalli P, Camilloni C, Kay LE, Vendruscolo M. Simultaneous NMR characterisation of multiple minima in the free energy landscape of an RNA UUCG tetraloop. Physical Chemistry Chemical Physics : Pccp. PMID 28067358 DOI: 10.1039/C6Cp08313G |
0.534 |
|
| 2017 |
Bonomi M, Heller GT, Camilloni C, Vendruscolo M. Principles of protein structural ensemble determination. Current Opinion in Structural Biology. 42: 106-116. PMID 28063280 DOI: 10.1016/J.Sbi.2016.12.004 |
0.646 |
|
| 2017 |
Wang Y, Camilloni C, Kim J, Vendruscolo M, Gao J, Veglia G. Characterization of Protein Kinase a Free Energy Landscape by NMR-Restrained Metadynamics Biophysical Journal. 112: 50a. DOI: 10.1016/J.Bpj.2016.11.310 |
0.61 |
|
| 2017 |
Cassaignau AM, Launay HM, Waudby CA, Wlodarski T, Karyadi M, Robertson AL, Wang X, Camilloni C, Vendruscolo M, Woolhead CA, Cabrita L, Christodoulou J. Structural Investigation of an Immunoglobulin Domain on the Ribosome using NMR Spectroscopy Biophysical Journal. 112: 41a. DOI: 10.1016/J.Bpj.2016.11.258 |
0.632 |
|
| 2016 |
Holliday MJ, Camilloni C, Armstrong GS, Vendruscolo M, Eisenmesser EZ. Networks of Dynamic Allostery Regulate Enzyme Function. Structure (London, England : 1993). PMID 28089447 DOI: 10.1016/J.Str.2016.12.003 |
0.514 |
|
| 2016 |
Meloni R, Camilloni C, Tiana G. Properties of low-dimensional collective variables in the molecular dynamics of biopolymers. Physical Review. E. 94: 052406. PMID 27967023 DOI: 10.1103/Physreve.94.052406 |
0.313 |
|
| 2016 |
Bonomi M, Camilloni C, Vendruscolo M. Metadynamic metainference: Enhanced sampling of the metainference ensemble using metadynamics. Scientific Reports. 6: 31232. PMID 27561930 DOI: 10.1038/Srep31232 |
0.551 |
|
| 2016 |
Camilloni C, Bonetti D, Morrone A, Giri R, Dobson CM, Brunori M, Gianni S, Vendruscolo M. Towards a structural biology of the hydrophobic effect in protein folding. Scientific Reports. 6: 28285. PMID 27461719 DOI: 10.1038/Srep28285 |
0.665 |
|
| 2016 |
Borkar AN, Bardaro MF, Camilloni C, Aprile FA, Varani G, Vendruscolo M. Structure of a low-population binding intermediate in protein-RNA recognition. Proceedings of the National Academy of Sciences of the United States of America. PMID 27286828 DOI: 10.1073/Pnas.1521349113 |
0.569 |
|
| 2016 |
Camilloni C, Sala BM, Sormanni P, Porcari R, Corazza A, De Rosa M, Zanini S, Barbiroli A, Esposito G, Bolognesi M, Bellotti V, Vendruscolo M, Ricagno S. Rational design of mutations that change the aggregation rate of a protein while maintaining its native structure and stability. Scientific Reports. 6: 25559. PMID 27150430 DOI: 10.1038/Srep25559 |
0.563 |
|
| 2016 |
Deckert A, Waudby CA, Wlodarski T, Wentink AS, Wang X, Kirkpatrick JP, Paton JF, Camilloni C, Kukic P, Dobson CM, Vendruscolo M, Cabrita LD, Christodoulou J. Structural characterization of the interaction of α-synuclein nascent chains with the ribosomal surface and trigger factor. Proceedings of the National Academy of Sciences of the United States of America. PMID 27092002 DOI: 10.1073/Pnas.1519124113 |
0.666 |
|
| 2016 |
Bonetti D, Camilloni C, Visconti L, Longhi S, Brunori M, Vendruscolo M, Gianni S. Identification and Structural Characterization of an Intermediate in the Folding of the Measles Virus X domain. The Journal of Biological Chemistry. PMID 27002146 DOI: 10.1074/Jbc.M116.721126 |
0.598 |
|
| 2016 |
Cabrita LD, Cassaignau AM, Launay HM, Waudby CA, Wlodarski T, Camilloni C, Karyadi ME, Robertson AL, Wang X, Wentink AS, Goodsell LS, Woolhead CA, Vendruscolo M, Dobson CM, Christodoulou J. A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding. Nature Structural & Molecular Biology. PMID 26926436 DOI: 10.1038/Nsmb.3182 |
0.652 |
|
| 2016 |
Toto A, Camilloni C, Giri R, Brunori M, Vendruscolo M, Gianni S. Molecular Recognition by Templated Folding of an Intrinsically Disordered Protein. Scientific Reports. 6: 21994. PMID 26912067 DOI: 10.1038/Srep21994 |
0.609 |
|
| 2016 |
Bonomi M, Camilloni C, Cavalli A, Vendruscolo M. Metainference: A Bayesian inference method for heterogeneous systems. Science Advances. 2: e1501177. PMID 26844300 DOI: 10.1126/Sciadv.1501177 |
0.52 |
|
| 2015 |
Camilloni C, Vendruscolo M. Using pseudocontact shifts and residual dipolar couplings as exact NMR restraints for the determination of protein structural ensembles. Biochemistry. PMID 26624789 DOI: 10.1021/Acs.Biochem.5B01138 |
0.62 |
|
| 2015 |
Kukic P, Lundström P, Camilloni C, Evenäs J, Akke M, Vendruscolo M. Structural insights into the calcium-mediated allosteric transition in the C-terminal domain of calmodulin from NMR measurements. Biochemistry. PMID 26618792 DOI: 10.1021/Acs.Biochem.5B00961 |
0.589 |
|
| 2015 |
Kukic P, Kannan A, Dijkstra MJ, Abeln S, Camilloni C, Vendruscolo M. Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations. Plos Computational Biology. 11: e1004435. PMID 26505754 DOI: 10.1371/Journal.Pcbi.1004435 |
0.609 |
|
| 2015 |
Granata D, Baftizadeh F, Habchi J, Galvagnion C, De Simone A, Camilloni C, Laio A, Vendruscolo M. The inverted free energy landscape of an intrinsically disordered peptide by simulations and experiments. Scientific Reports. 5: 15449. PMID 26498066 DOI: 10.1038/Srep15449 |
0.596 |
|
| 2015 |
Borkar AN, Vallurupalli P, Camilloni C, Kay LE, Vendruscolo M. 89 Constructing free energy landscapes of RNAs at atomic resolution and characterisation of their excited states. Journal of Biomolecular Structure & Dynamics. 33: 58. PMID 26103301 DOI: 10.1080/07391102.2015.1032706 |
0.457 |
|
| 2015 |
Brewer KD, Bacaj T, Cavalli A, Camilloni C, Swarbrick JD, Liu J, Zhou A, Zhou P, Barlow N, Xu J, Seven AB, Prinslow EA, Voleti R, Häussinger D, Bonvin AM, et al. Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution. Nature Structural & Molecular Biology. 22: 555-64. PMID 26030874 DOI: 10.1038/Nsmb.3035 |
0.521 |
|
| 2015 |
Camilloni C, Vendruscolo M. Reply to "Comment on 'A Tensor-Free Method for the Structural and Dynamic Refinement of Proteins using Residual Dipolar Couplings'". The Journal of Physical Chemistry. B. 119: 8225-6. PMID 26030476 DOI: 10.1021/Acs.Jpcb.5B04166 |
0.598 |
|
| 2015 |
Holliday MJ, Camilloni C, Armstrong GS, Isern NG, Zhang F, Vendruscolo M, Eisenmesser EZ. Structure and Dynamics of GeoCyp: A Thermophilic Cyclophilin with a Novel Substrate Binding Mechanism That Functions Efficiently at Low Temperatures. Biochemistry. 54: 3207-17. PMID 25923019 DOI: 10.1021/Acs.Biochem.5B00263 |
0.566 |
|
| 2015 |
Kukic P, Alvin Leung HT, Bemporad F, Aprile FA, Kumita JR, De Simone A, Camilloni C, Vendruscolo M. Structure and dynamics of the integrin LFA-1 I-domain in the inactive state underlie its inside-out/outside-in signaling and allosteric mechanisms. Structure (London, England : 1993). 23: 745-53. PMID 25773142 DOI: 10.1016/J.Str.2014.12.020 |
0.557 |
|
| 2015 |
Sormanni P, Camilloni C, Fariselli P, Vendruscolo M. The s2D method: simultaneous sequence-based prediction of the statistical populations of ordered and disordered regions in proteins. Journal of Molecular Biology. 427: 982-96. PMID 25534081 DOI: 10.1016/J.Jmb.2014.12.007 |
0.602 |
|
| 2015 |
Porcari R, Proukakis C, Waudby CA, Bolognesi B, Mangione PP, Paton JF, Mullin S, Cabrita LD, Penco A, Relini A, Verona G, Vendruscolo M, Stoppini M, Tartaglia GG, Camilloni C, et al. The H50Q mutation induces a 10-fold decrease in the solubility of α-synuclein. The Journal of Biological Chemistry. 290: 2395-404. PMID 25505181 DOI: 10.1074/Jbc.M114.610527 |
0.496 |
|
| 2015 |
Camilloni C, Vendruscolo M. A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings. The Journal of Physical Chemistry. B. 119: 653-61. PMID 24824082 DOI: 10.1021/Jp5021824 |
0.607 |
|
| 2015 |
Waudby C, Proukakis C, Porcari R, Bellotti V, Shapira A, Christodoulou J, Camilloni C, Tartaglia GG, Stoppini M, Verona G, Vendruscolo M, Relini A, Penco A, Cabrita L, Mullin S, et al. 1H, 13C, and 15N chemical shift assignments for alpha-synuclein monomer (WT) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25227 |
0.42 |
|
| 2014 |
Meloni R, Camilloni C, Tiana G. Sampling the Denatured State of Polypeptides in Water, Urea, and Guanidine Chloride to Strict Equilibrium Conditions with the Help of Massively Parallel Computers. Journal of Chemical Theory and Computation. 10: 846-54. PMID 26580058 DOI: 10.1021/Ct400879V |
0.463 |
|
| 2014 |
Gianni S, Camilloni C, Giri R, Toto A, Bonetti D, Morrone A, Sormanni P, Brunori M, Vendruscolo M. Understanding the frustration arising from the competition between function, misfolding, and aggregation in a globular protein. Proceedings of the National Academy of Sciences of the United States of America. 111: 14141-6. PMID 25228761 DOI: 10.1073/Pnas.1405233111 |
0.586 |
|
| 2014 |
Leung HT, Kukic P, Camilloni C, Bemporad F, De Simone A, Aprile FA, Kumita JR, Vendruscolo M. NMR characterization of the conformational fluctuations of the human lymphocyte function-associated antigen-1 I-domain. Protein Science : a Publication of the Protein Society. 23: 1596-606. PMID 25147050 DOI: 10.1002/Pro.2538 |
0.55 |
|
| 2014 |
Camilloni C, Sahakyan AB, Holliday MJ, Isern NG, Zhang F, Eisenmesser EZ, Vendruscolo M. Cyclophilin A catalyzes proline isomerization by an electrostatic handle mechanism. Proceedings of the National Academy of Sciences of the United States of America. 111: 10203-8. PMID 24982184 DOI: 10.1073/Pnas.1404220111 |
0.727 |
|
| 2014 |
Camilloni C, Vendruscolo M. Statistical mechanics of the denatured state of a protein using replica-averaged metadynamics. Journal of the American Chemical Society. 136: 8982-91. PMID 24884637 DOI: 10.1021/Ja5027584 |
0.638 |
|
| 2014 |
Blombach F, Launay H, Snijders AP, Zorraquino V, Wu H, de Koning B, Brouns SJ, Ettema TJ, Camilloni C, Cavalli A, Vendruscolo M, Dickman MJ, Cabrita LD, La Teana A, Benelli D, et al. Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain. The Biochemical Journal. 462: 373-84. PMID 24825021 DOI: 10.1042/Bj20131474 |
0.523 |
|
| 2014 |
Krieger JM, Fusco G, Lewitzky M, Simister PC, Marchant J, Camilloni C, Feller SM, De Simone A. Conformational recognition of an intrinsically disordered protein. Biophysical Journal. 106: 1771-9. PMID 24739176 DOI: 10.1016/J.Bpj.2014.03.004 |
0.535 |
|
| 2014 |
Fu B, Sahakyan AB, Camilloni C, Tartaglia GG, Paci E, Caflisch A, Vendruscolo M, Cavalli A. ALMOST: an all atom molecular simulation toolkit for protein structure determination. Journal of Computational Chemistry. 35: 1101-5. PMID 24676684 DOI: 10.1002/Jcc.23588 |
0.789 |
|
| 2014 |
Kukic P, Camilloni C, Cavalli A, Vendruscolo M. Determination of the individual roles of the linker residues in the interdomain motions of calmodulin using NMR chemical shifts. Journal of Molecular Biology. 426: 1826-38. PMID 24530797 DOI: 10.1016/J.Jmb.2014.02.002 |
0.631 |
|
| 2014 |
Kannan A, Camilloni C, Sahakyan AB, Cavalli A, Vendruscolo M. A conformational ensemble derived using NMR methyl chemical shifts reveals a mechanical clamping transition that gates the binding of the HU protein to DNA. Journal of the American Chemical Society. 136: 2204-7. PMID 24517490 DOI: 10.1021/Ja4105396 |
0.773 |
|
| 2014 |
Montalvao R, Camilloni C, De Simone A, Vendruscolo M. New opportunities for tensor-free calculations of residual dipolar couplings for the study of protein dynamics. Journal of Biomolecular Nmr. 58: 233-8. PMID 24477919 DOI: 10.1007/S10858-013-9801-3 |
0.637 |
|
| 2014 |
Kendrick AA, Holliday MJ, Isern NG, Zhang F, Camilloni C, Huynh C, Vendruscolo M, Armstrong G, Eisenmesser EZ. The dynamics of interleukin-8 and its interaction with human CXC receptor I peptide. Protein Science : a Publication of the Protein Society. 23: 464-80. PMID 24442768 DOI: 10.1002/Pro.2430 |
0.514 |
|
| 2014 |
Holliday M, Camilloni C, Armstrong G, Isern N, Zhang F, Vendruscolo M, Eisenmesser E. Backbone assignments for human Cyclophilin C Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25341 |
0.415 |
|
| 2014 |
Holliday M, Camilloni C, Armstrong G, Isern N, Zhang F, Vendruscolo M, Eisenmesser E. Backbone amide assignments for human Cyclophilin C with saturating concentrations of the model peptide GSFGPDLRAGD Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25339 |
0.44 |
|
| 2014 |
Fu B, Kukic P, Camilloni C, Vendruscolo M. MD Simulations of Intrinsically Disordered Proteins with Replica-Averaged Chemical Shift Restraints Biophysical Journal. 106: 481a. DOI: 10.1016/J.Bpj.2013.11.2714 |
0.629 |
|
| 2014 |
Camilloni C, Vendruscolo M. Conformational Equilibrium between the Sub States of the Acidic Denatured State of ACBP Determined by NMR Chemical Shifts and Metadynamics Biophysical Journal. 106: 459a-460a. DOI: 10.1016/J.Bpj.2013.11.2605 |
0.649 |
|
| 2013 |
Camilloni C, Cavalli A, Vendruscolo M. Replica-Averaged Metadynamics. Journal of Chemical Theory and Computation. 9: 5610-7. PMID 26592295 DOI: 10.1021/Ct4006272 |
0.584 |
|
| 2013 |
Waudby CA, Camilloni C, Fitzpatrick AW, Cabrita LD, Dobson CM, Vendruscolo M, Christodoulou J. In-cell NMR characterization of the secondary structure populations of a disordered conformation of α-synuclein within E. coli cells. Plos One. 8: e72286. PMID 23991082 DOI: 10.1371/Journal.Pone.0072286 |
0.656 |
|
| 2013 |
Camilloni C, Vendruscolo M. A relationship between the aggregation rates of α-synuclein variants and the β-sheet populations in their monomeric forms. The Journal of Physical Chemistry. B. 117: 10737-41. PMID 23941114 DOI: 10.1021/Jp405614J |
0.591 |
|
| 2013 |
Granata D, Camilloni C, Vendruscolo M, Laio A. Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics. Proceedings of the National Academy of Sciences of the United States of America. 110: 6817-22. PMID 23572592 DOI: 10.1073/Pnas.1218350110 |
0.632 |
|
| 2013 |
Cavalli A, Camilloni C, Vendruscolo M. Molecular dynamics simulations with replica-averaged structural restraints generate structural ensembles according to the maximum entropy principle. The Journal of Chemical Physics. 138: 094112. PMID 23485282 DOI: 10.1063/1.4793625 |
0.6 |
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| 2013 |
Camilloni C, Cavalli A, Vendruscolo M. Assessment of the use of NMR chemical shifts as replica-averaged structural restraints in molecular dynamics simulations to characterize the dynamics of proteins. The Journal of Physical Chemistry. B. 117: 1838-43. PMID 23327201 DOI: 10.1021/Jp3106666 |
0.627 |
|
| 2013 |
Cavalli A, Camilloni C, Vendruscolo M. Erratum: “Molecular dynamics simulations with replica-averaged structural restraints generate structural ensembles according to the maximum entropy principle” [J. Chem. Phys. 138, 094112 (2013)] The Journal of Chemical Physics. 139: 169903. DOI: 10.1063/1.4828456 |
0.563 |
|
| 2013 |
Granata D, Baftizadeh Baghal F, Camilloni C, Vendruscolo M, Laio A. Thermodynamics of an Intrinsically Disordered Protein by Atomistic Simulations Biophysical Journal. 104: 55a. DOI: 10.1016/J.Bpj.2012.11.344 |
0.627 |
|
| 2012 |
Tiana G, Camilloni C. Ratcheted molecular-dynamics simulations identify efficiently the transition state of protein folding. The Journal of Chemical Physics. 137: 235101. PMID 23267502 DOI: 10.1063/1.4769085 |
0.462 |
|
| 2012 |
Heidarsson PO, Valpapuram I, Camilloni C, Imparato A, Tiana G, Poulsen FM, Kragelund BB, Cecconi C. A highly compliant protein native state with a spontaneous-like mechanical unfolding pathway. Journal of the American Chemical Society. 134: 17068-75. PMID 23004011 DOI: 10.1021/Ja305862M |
0.494 |
|
| 2012 |
Sutto L, Camilloni C. From A to B: a ride in the free energy surfaces of protein G domains suggests how new folds arise. The Journal of Chemical Physics. 136: 185101. PMID 22583310 DOI: 10.1063/1.4712029 |
0.445 |
|
| 2012 |
Camilloni C, De Simone A, Vranken WF, Vendruscolo M. Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts. Biochemistry. 51: 2224-31. PMID 22360139 DOI: 10.1021/Bi3001825 |
0.625 |
|
| 2012 |
Camilloni C, Robustelli P, De Simone A, Cavalli A, Vendruscolo M. Characterization of the conformational equilibrium between the two major substates of RNase A using NMR chemical shifts. Journal of the American Chemical Society. 134: 3968-71. PMID 22320129 DOI: 10.1021/Ja210951Z |
0.638 |
|
| 2012 |
Camilloni C, Schaal D, Schweimer K, Schwarzinger S, De Simone A. Energy landscape of the prion protein helix 1 probed by metadynamics and NMR. Biophysical Journal. 102: 158-67. PMID 22225810 DOI: 10.1016/J.Bpj.2011.12.003 |
0.548 |
|
| 2011 |
Camilloni C, Broglia RA, Tiana G. Hierarchy of folding and unfolding events of protein G, CI2, and ACBP from explicit-solvent simulations. The Journal of Chemical Physics. 134: 045105. PMID 21280806 DOI: 10.1063/1.3523345 |
0.47 |
|
| 2010 |
Caldarini M, Sutto L, Camilloni C, Vasile F, Broglia RA, Tiana G. Identification of the folding inhibitors of hen-egg lysozyme: gathering the right tools. European Biophysics Journal : Ebj. 39: 911-9. PMID 19326112 DOI: 10.1007/S00249-009-0441-1 |
0.473 |
|
| 2009 |
Camilloni C, Sutto L. Lymphotactin: how a protein can adopt two folds. The Journal of Chemical Physics. 131: 245105. PMID 20059117 DOI: 10.1063/1.3276284 |
0.509 |
|
| 2009 |
Bonomi M, Branduardi D, Bussi G, Camilloni C, Provasi D, Raiteri P, Donadio D, Marinelli F, Pietrucci F, Broglia RA, Parrinello M. PLUMED: A portable plugin for free-energy calculations with molecular dynamics Computer Physics Communications. 180: 1961-1972. DOI: 10.1016/J.Cpc.2009.05.011 |
0.36 |
|
| 2008 |
Calosci N, Chi CN, Richter B, Camilloni C, Engström A, Eklund L, Travaglini-Allocatelli C, Gianni S, Vendruscolo M, Jemth P. Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteins. Proceedings of the National Academy of Sciences of the United States of America. 105: 19241-6. PMID 19033470 DOI: 10.1073/Pnas.0804774105 |
0.594 |
|
| 2008 |
Marini F, Camilloni C, Provasi D, Broglia RA, Tiana G. Metadynamic sampling of the free-energy landscapes of proteins coupled with a Monte Carlo algorithm. Gene. 422: 37-40. PMID 18593595 DOI: 10.1016/J.Gene.2008.06.003 |
0.391 |
|
| 2008 |
Camilloni C, Sutto L, Provasi D, Tiana G, Broglia RA. Early events in protein folding: Is there something more than hydrophobic burst? Protein Science : a Publication of the Protein Society. 17: 1424-33. PMID 18511538 DOI: 10.1110/Ps.035105.108 |
0.469 |
|
| 2008 |
Verkhivker G, Tiana G, Camilloni C, Provasi D, Broglia RA. Atomistic simulations of the HIV-1 protease folding inhibition. Biophysical Journal. 95: 550-62. PMID 18375506 DOI: 10.1529/Biophysj.107.127621 |
0.352 |
|
| 2008 |
Camilloni C, Rocco AG, Eberini I, Gianazza E, Broglia RA, Tiana G. Urea and guanidinium chloride denature protein L in different ways in molecular dynamics simulations. Biophysical Journal. 94: 4654-61. PMID 18339753 DOI: 10.1529/Biophysj.107.125799 |
0.477 |
|
| 2008 |
Camilloni C, Provasi D, Tiana G, Broglia RA. Exploring the protein G helix free-energy surface by solute tempering metadynamics. Proteins. 71: 1647-54. PMID 18076039 DOI: 10.1002/Prot.21852 |
0.414 |
|
| 2007 |
Camilloni C, Provasi D, Tiana G, Broglia RA. Optical absorption of a green fluorescent protein variant: environment effects in a density functional study. The Journal of Physical Chemistry. B. 111: 10807-12. PMID 17713940 DOI: 10.1021/Jp072511E |
0.386 |
|
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