| Year |
Citation |
Score |
| 2023 |
Pavlu S, Nikumbh S, Kovacik M, An T, Lenhard B, Simkova H, Navratilova P. Core promoterome of barley embryo. Computational and Structural Biotechnology Journal. 23: 264-277. PMID 38173877 DOI: 10.1016/j.csbj.2023.12.003 |
0.499 |
|
| 2023 |
Nikumbh S, Lenhard B. Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation. Plos Computational Biology. 19: e1011491. PMID 37983292 DOI: 10.1371/journal.pcbi.1011491 |
0.413 |
|
| 2023 |
Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, ... Lenhard B, et al. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Research. PMID 37962376 DOI: 10.1093/nar/gkad1059 |
0.606 |
|
| 2022 |
Baranasic D, Hörtenhuber M, Balwierz PJ, Zehnder T, Mukarram AK, Nepal C, Várnai C, Hadzhiev Y, Jimenez-Gonzalez A, Li N, Wragg J, D'Orazio FM, Relic D, Pachkov M, Díaz N, ... ... Lenhard B, et al. Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature Genetics. PMID 35789323 DOI: 10.1038/s41588-022-01089-w |
0.338 |
|
| 2021 |
Castro-Mondragon JA, Riudavets-Puig R, Rauluseviciute I, Berhanu Lemma R, Turchi L, Blanc-Mathieu R, Lucas J, Boddie P, Khan A, Manosalva Pérez N, Fornes O, Leung TY, Aguirre A, Hammal F, Schmelter D, ... ... Lenhard B, et al. JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. Nucleic Acids Research. PMID 34850907 DOI: 10.1093/nar/gkab1113 |
0.608 |
|
| 2021 |
Weiss FD, Calderon L, Wang YF, Georgieva R, Guo Y, Cvetesic N, Kaur M, Dharmalingam G, Krantz ID, Lenhard B, Fisher AG, Merkenschlager M. Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin. Nature Communications. 12: 2919. PMID 34006846 DOI: 10.1038/s41467-021-23141-9 |
0.751 |
|
| 2021 |
D'Orazio FM, Balwierz PJ, González AJ, Guo Y, Hernández-Rodríguez B, Wheatley L, Jasiulewicz A, Hadzhiev Y, Vaquerizas JM, Cairns B, Lenhard B, Müller F. Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization. Developmental Cell. PMID 33651978 DOI: 10.1016/j.devcel.2021.02.007 |
0.329 |
|
| 2020 |
Yu C, Cvetesic N, Hisler V, Gupta K, Ye T, Gazdag E, Negroni L, Hajkova P, Berger I, Lenhard B, Müller F, Vincent SD, Tora L. TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage. Nature Communications. 11: 6439. PMID 33353944 DOI: 10.1038/s41467-020-20239-4 |
0.769 |
|
| 2020 |
Martín-Durán JM, Vellutini BC, Marlétaz F, Cetrangolo V, Cvetesic N, Thiel D, Henriet S, Grau-Bové X, Carrillo-Baltodano AM, Gu W, Kerbl A, Marquez Y, Bekkouche N, Chourrout D, Gómez-Skarmeta JL, ... ... Lenhard B, et al. Publisher Correction: Conservative route to genome compaction in a miniature annelid. Nature Ecology & Evolution. PMID 33239821 DOI: 10.1038/s41559-020-01366-z |
0.722 |
|
| 2020 |
Martín-Durán JM, Vellutini BC, Marlétaz F, Cetrangolo V, Cvetesic N, Thiel D, Henriet S, Grau-Bové X, Carrillo-Baltodano AM, Gu W, Kerbl A, Marquez Y, Bekkouche N, Chourrout D, Gómez-Skarmeta JL, ... ... Lenhard B, et al. Conservative route to genome compaction in a miniature annelid. Nature Ecology & Evolution. PMID 33199869 DOI: 10.1038/s41559-020-01327-6 |
0.759 |
|
| 2020 |
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, ... ... Lenhard B, et al. Functional annotation of human long noncoding RNAs via molecular phenotyping. Genome Research. PMID 32718982 DOI: 10.1101/Gr.254219.119 |
0.443 |
|
| 2020 |
Wragg JW, Roos L, Vucenovic D, Cvetesic N, Lenhard B, Müller F. Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic-associated core promoter regulation. Nucleic Acids Research. PMID 32619237 DOI: 10.1093/Nar/Gkaa563 |
0.766 |
|
| 2020 |
Lewis SH, Ross L, Bain SA, Pahita E, Smith SA, Cordaux R, Miska EA, Lenhard B, Jiggins FM, Sarkies P. ------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods. Plos Genetics. 16: e1008864. PMID 32584820 DOI: 10.1371/Journal.Pgen.1008864 |
0.392 |
|
| 2020 |
Nepal C, Taranta A, Hadzhiev Y, Pundhir S, Mydel P, Lenhard B, Müller F, Andersen JB. Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans. Iscience. 23: 101008. PMID 32268280 DOI: 10.1016/J.Isci.2020.101008 |
0.459 |
|
| 2020 |
Bonetti A, Agostini F, Suzuki AM, Hashimoto K, Pascarella G, Gimenez J, Roos L, Nash AJ, Ghilotti M, Cameron CJF, Valentine M, Medvedeva YA, Noguchi S, Agirre E, Kashi K, ... ... Lenhard B, et al. RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions. Nature Communications. 11: 1018. PMID 32094342 DOI: 10.1038/S41467-020-14337-6 |
0.475 |
|
| 2020 |
Nepal C, Hadzhiev Y, Balwierz P, Tarifeño-Saldivia E, Cardenas R, Wragg JW, Suzuki AM, Carninci P, Peers B, Lenhard B, Andersen JB, Müller F. Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing. Nature Communications. 11: 168. PMID 31924754 DOI: 10.1038/S41467-019-13687-0 |
0.485 |
|
| 2020 |
Lewis SH, Ross L, Bain SA, Pahita E, Smith SA, Cordaux R, Miska EA, Lenhard B, Jiggins FM, Sarkies P. Methylation is a better predictor of nucleosomal pattern than housekeeping gene status. Plos Genetics. DOI: 10.1371/Journal.Pgen.1008864.S009 |
0.383 |
|
| 2020 |
Lewis SH, Ross L, Bain SA, Pahita E, Smith SA, Cordaux R, Miska EA, Lenhard B, Jiggins FM, Sarkies P. Expression patterns of methylated and unmethylated genes for all species (cf Fig 5B). Plos Genetics. DOI: 10.1371/Journal.Pgen.1008864.S006 |
0.308 |
|
| 2020 |
Lewis SH, Ross L, Bain SA, Pahita E, Smith SA, Cordaux R, Miska EA, Lenhard B, Jiggins FM, Sarkies P. ALKB2 DNA repair is associated with high levels of DNA methylation across arthropods. Plos Genetics. DOI: 10.1371/Journal.Pgen.1008864.S001 |
0.301 |
|
| 2019 |
Fornes O, Castro-Mondragon JA, Khan A, van der Lee R, Zhang X, Richmond PA, Modi BP, Correard S, Gheorghe M, Baranašić D, Santana-Garcia W, Tan G, Chèneby J, Ballester B, Parcy F, ... ... Lenhard B, et al. JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Research. PMID 31701148 DOI: 10.1093/Nar/Gkz1001 |
0.618 |
|
| 2019 |
Barešić A, Nash AJ, Dahoun T, Howes O, Lenhard B. Understanding the genetics of neuropsychiatric disorders: the potential role of genomic regulatory blocks. Molecular Psychiatry. PMID 31616042 DOI: 10.1038/S41380-019-0518-X |
0.434 |
|
| 2019 |
Tan G, Polychronopoulos D, Lenhard B. CNEr: A toolkit for exploring extreme noncoding conservation. Plos Computational Biology. 15: e1006940. PMID 31449516 DOI: 10.1371/Journal.Pcbi.1006940 |
0.514 |
|
| 2019 |
Cvetesic N, Pahita E, Lenhard B. Transcription Start Site Mapping Using Super-low Input Carrier-CAGE. Journal of Visualized Experiments : Jove. PMID 31305534 DOI: 10.3791/59805 |
0.782 |
|
| 2019 |
Ferreirós-Vidal I, Carroll T, Zhang T, Lagani V, Ramirez RN, Ing-Simmons E, Garcia A, Cooper L, Liang Z, Papoutsoglou G, Dharmalingam G, Guo Y, Tarazona S, Fernandes SJ, Noori P, ... ... Lenhard B, et al. Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation. Plos Biology. 17: e2006506. PMID 30978178 DOI: 10.1371/Journal.Pbio.2006506 |
0.383 |
|
| 2019 |
Newton MD, Taylor BJ, Driessen RPC, Roos L, Cvetesic N, Allyjaun S, Lenhard B, Cuomo ME, Rueda DS. DNA stretching induces Cas9 off-target activity. Nature Structural & Molecular Biology. PMID 30804513 DOI: 10.1038/S41594-019-0188-Z |
0.732 |
|
| 2019 |
Börlin CS, Cvetesic N, Holland P, Bergenholm D, Siewers V, Lenhard B, Nielsen J. Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions. Fems Yeast Research. 19. PMID 30590648 DOI: 10.1093/Femsyr/Foy128 |
0.776 |
|
| 2019 |
Khan A, Fornes O, Castro-Mondragon JA, Lee Rvd, Sandelin A, Lenhard B, Wasserman WW, Mathelier A. Facilitating community-based curation of transcription factor binding profiles in JASPAR F1000research. 8. DOI: 10.7490/F1000Research.1116592.1 |
0.346 |
|
| 2018 |
Nash AJ, Lenhard B. A Novel Measure of Non-coding Genome Conservation Identifies Genomic Regulatory Blocks Within Primates. Bioinformatics (Oxford, England). PMID 30535005 DOI: 10.1093/Bioinformatics/Bty1014 |
0.45 |
|
| 2018 |
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, ... ... Lenhard B, et al. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. PMID 30464347 DOI: 10.1038/S41586-018-0734-6 |
0.51 |
|
| 2018 |
Cvetesic N, Leitch HG, Borkowska M, Müller F, Carninci P, Hajkova P, Lenhard B. SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA. Genome Research. PMID 30404778 DOI: 10.1101/Gr.235937.118 |
0.784 |
|
| 2018 |
Cuartero S, Weiss FD, Dharmalingam G, Guo Y, Ing-Simmons E, Masella S, Robles-Rebollo I, Xiao X, Wang YF, Barozzi I, Djeghloul D, Amano MT, Niskanen H, Petretto E, Dowell RD, ... ... Lenhard B, et al. Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation. Nature Immunology. PMID 30127433 DOI: 10.1038/S41590-018-0184-1 |
0.408 |
|
| 2018 |
Li C, Lenhard B, Luscombe NM. Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome. Genome Research. PMID 29618487 DOI: 10.1101/Gr.231449.117 |
0.529 |
|
| 2018 |
Hill PWS, Leitch HG, Requena CE, Sun Z, Amouroux R, Roman-Trufero M, Borkowska M, Terragni J, Vaisvila R, Linnett S, Bagci H, Dharmalingham G, Haberle V, Lenhard B, Zheng Y, et al. Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte. Nature. PMID 29513657 DOI: 10.1038/Nature25964 |
0.385 |
|
| 2018 |
Danks GB, Navratilova P, Lenhard B, Thompson EM. Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate. Bmc Genomics. 19: 164. PMID 29482522 DOI: 10.1186/S12864-018-4504-5 |
0.517 |
|
| 2018 |
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, Lee Rvd, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, et al. JASPAR: an open-access database of transcription factor binding profiles F1000research. 7. DOI: 10.7490/F1000Research.1115440.1 |
0.402 |
|
| 2017 |
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, et al. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research. PMID 29161433 DOI: 10.1093/nar/gkx1188 |
0.58 |
|
| 2017 |
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, et al. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research. PMID 29140473 DOI: 10.1093/Nar/Gkx1126 |
0.636 |
|
| 2017 |
Polychronopoulos D, King JWD, Nash AJ, Tan G, Lenhard B. Conserved non-coding elements: developmental gene regulation meets genome organization. Nucleic Acids Research. PMID 29121339 DOI: 10.1093/Nar/Gkx1074 |
0.474 |
|
| 2017 |
Harmston N, Ing-Simmons E, Tan G, Perry M, Merkenschlager M, Lenhard B. Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation. Nature Communications. 8: 441. PMID 28874668 DOI: 10.1038/S41467-017-00524-5 |
0.429 |
|
| 2017 |
Cvetesic N, Lenhard B. Core promoters across the genome. Nature Biotechnology. 35: 123-124. PMID 28178253 DOI: 10.1038/Nbt.3788 |
0.765 |
|
| 2017 |
Cantone I, Dharmalingam G, Chan YW, Kohler AC, Lenhard B, Merkenschlager M, Fisher AG. Allele-specific analysis of cell fusion-mediated pluripotent reprograming reveals distinct and predictive susceptibilities of human X-linked genes to reactivation. Genome Biology. 18: 2. PMID 28118853 DOI: 10.1186/S13059-016-1136-4 |
0.312 |
|
| 2016 |
Cvetesic N, Dulic M, Bilus M, Sostaric N, Lenhard B, Gruic-Sovulj I. Naturally Occurring Isoleucyl-tRNA Synthetase without tRNA-dependent Pre-transfer Editing. The Journal of Biological Chemistry. 291: 8618-31. PMID 26921320 DOI: 10.1074/Jbc.M115.698225 |
0.757 |
|
| 2016 |
Tan G, Lenhard B. TFBSTools: an R/Bioconductor package for transcription factor binding site analysis. Bioinformatics (Oxford, England). PMID 26794315 DOI: 10.1093/Bioinformatics/Btw024 |
0.497 |
|
| 2016 |
Haberle V, Lenhard B. Promoter architectures and developmental gene regulation. Seminars in Cell & Developmental Biology. 57: 11-23. PMID 26783721 DOI: 10.1016/J.Semcdb.2016.01.014 |
0.5 |
|
| 2016 |
Cheung N, Fung TK, Zeisig BB, Holmes K, Rane JK, Mowen KA, Finn MG, Lenhard B, Chan LC, So CW. Targeting Aberrant Epigenetic Networks Mediated by PRMT1 and KDM4C in Acute Myeloid Leukemia. Cancer Cell. 29: 32-48. PMID 26766589 DOI: 10.1016/J.Ccell.2015.12.007 |
0.352 |
|
| 2015 |
Stadhouders R, Cico A, Stephen T, Thongjuea S, Kolovos P, Baymaz HI, Yu X, Demmers J, Bezstarosti K, Maas A, Barroca V, Kockx C, Ozgur Z, van Ijcken W, Arcangeli ML, ... ... Lenhard B, et al. Control of developmentally primed erythroid genes by combinatorial co-repressor actions. Nature Communications. 6: 8893. PMID 26593974 DOI: 10.1038/ncomms9893 |
0.371 |
|
| 2015 |
Harmston N, Ing-Simmons E, Perry M, Barešić A, Lenhard B. GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data. Bmc Genomics. 16: 963. PMID 26576536 DOI: 10.1186/S12864-015-2140-X |
0.446 |
|
| 2015 |
Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Research. PMID 26531826 DOI: 10.1093/Nar/Gkv1176 |
0.633 |
|
| 2015 |
Ishibashi M, Manning E, Shoubridge C, Krecsmarik M, Hawkins TA, Giacomotto J, Zhao T, Mueller T, Bader PI, Cheung SW, Stankiewicz P, Bain NL, Hackett A, Reddy CC, Mechaly AS, ... ... Lenhard B, et al. Copy number variants in patients with intellectual disability affect the regulation of ARX transcription factor gene. Human Genetics. PMID 26337422 DOI: 10.1007/S00439-015-1594-X |
0.454 |
|
| 2015 |
Naville M, Ishibashi M, Ferg M, Bengani H, Rinkwitz S, Krecsmarik M, Hawkins TA, Wilson SW, Manning E, Chilamakuri CS, Wilson DI, Louis A, Lucy Raymond F, Rastegar S, Strähle U, ... Lenhard B, et al. Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome. Nature Communications. 6: 6904. PMID 25908307 DOI: 10.1038/Ncomms7904 |
0.487 |
|
| 2015 |
Ing-Simmons E, Seitan VC, Faure AJ, Flicek P, Carroll T, Dekker J, Fisher AG, Lenhard B, Merkenschlager M. Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin. Genome Research. 25: 504-13. PMID 25677180 DOI: 10.1101/Gr.184986.114 |
0.305 |
|
| 2015 |
Haberle V, Forrest AR, Hayashizaki Y, Carninci P, Lenhard B. CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses. Nucleic Acids Research. 43: e51. PMID 25653163 DOI: 10.1093/Nar/Gkv054 |
0.416 |
|
| 2015 |
Danks GB, Raasholm M, Campsteijn C, Long AM, Manak JR, Lenhard B, Thompson EM. Trans-splicing and operons in metazoans: translational control in maternally regulated development and recovery from growth arrest. Molecular Biology and Evolution. 32: 585-99. PMID 25525214 DOI: 10.1093/Molbev/Msu336 |
0.422 |
|
| 2014 |
Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M, Itoh M, Andersson R, Mungall CJ, Meehan TF, Schmeier S, ... ... Lenhard B, et al. A promoter-level mammalian expression atlas. Nature. 507: 462-70. PMID 24670764 DOI: 10.1038/Nature13182 |
0.686 |
|
| 2014 |
Stadhouders R, Aktuna S, Thongjuea S, Aghajanirefah A, Pourfarzad F, van Ijcken W, Lenhard B, Rooks H, Best S, Menzel S, Grosveld F, Thein SL, Soler E. HBS1L-MYB intergenic variants modulate fetal hemoglobin via long-range MYB enhancers. The Journal of Clinical Investigation. 124: 1699-710. PMID 24614105 DOI: 10.1182/Blood.V122.21.43.43 |
0.401 |
|
| 2014 |
Pascarella G, Lazarevic D, Plessy C, Bertin N, Akalin A, Vlachouli C, Simone R, Faulkner GJ, Zucchelli S, Kawai J, Daub CO, Hayashizaki Y, Lenhard B, Carninci P, Gustincich S. NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements. Frontiers in Cellular Neuroscience. 8: 41. PMID 24600346 DOI: 10.3389/Fncel.2014.00041 |
0.383 |
|
| 2014 |
Sharma Y, Chilamakuri CS, Bakke M, Lenhard B. Computational characterization of modes of transcriptional regulation of nuclear receptor genes. Plos One. 9: e88880. PMID 24551185 DOI: 10.1371/Journal.Pone.0088880 |
0.433 |
|
| 2014 |
Zuin J, Franke V, van Ijcken WF, van der Sloot A, Krantz ID, van der Reijden MI, Nakato R, Lenhard B, Wendt KS. A cohesin-independent role for NIPBL at promoters provides insights in CdLS. Plos Genetics. 10: e1004153. PMID 24550742 DOI: 10.1371/Journal.Pgen.1004153 |
0.447 |
|
| 2014 |
Haberle V, Li N, Hadzhiev Y, Plessy C, Previti C, Nepal C, Gehrig J, Dong X, Akalin A, Suzuki AM, van IJcken WF, Armant O, Ferg M, Strähle U, Carninci P, ... ... Lenhard B, et al. Two independent transcription initiation codes overlap on vertebrate core promoters. Nature. 507: 381-5. PMID 24531765 DOI: 10.1038/Nature12974 |
0.761 |
|
| 2014 |
Mathelier A, Zhao X, Zhang AW, Parcy F, Worsley-Hunt R, Arenillas DJ, Buchman S, Chen CY, Chou A, Ienasescu H, Lim J, Shyr C, Tan G, Zhou M, Lenhard B, et al. JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Research. 42: D142-7. PMID 24194598 DOI: 10.1093/Nar/Gkt997 |
0.616 |
|
| 2013 |
Harmston N, Baresic A, Lenhard B. The mystery of extreme non-coding conservation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20130021. PMID 24218634 DOI: 10.1098/Rstb.2013.0021 |
0.414 |
|
| 2013 |
Frangini A, Sjöberg M, Roman-Trufero M, Dharmalingam G, Haberle V, Bartke T, Lenhard B, Malumbres M, Vidal M, Dillon N. The aurora B kinase and the polycomb protein ring1B combine to regulate active promoters in quiescent lymphocytes. Molecular Cell. 51: 647-61. PMID 24034696 DOI: 10.1016/J.Molcel.2013.08.022 |
0.387 |
|
| 2013 |
Nepal C, Hadzhiev Y, Previti C, Haberle V, Li N, Takahashi H, Suzuki AM, Sheng Y, Abdelhamid RF, Anand S, Gehrig J, Akalin A, Kockx CE, van der Sloot AA, van Ijcken WF, ... ... Lenhard B, et al. Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis. Genome Research. 23: 1938-50. PMID 24002785 DOI: 10.1101/Gr.153692.112 |
0.511 |
|
| 2013 |
Seitan VC, Faure AJ, Zhan Y, McCord RP, Lajoie BR, Ing-Simmons E, Lenhard B, Giorgetti L, Heard E, Fisher AG, Flicek P, Dekker J, Merkenschlager M. Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments. Genome Research. 23: 2066-77. PMID 24002784 DOI: 10.1101/Gr.161620.113 |
0.454 |
|
| 2013 |
Harmston N, Lenhard B. Chromatin and epigenetic features of long-range gene regulation. Nucleic Acids Research. 41: 7185-99. PMID 23766291 DOI: 10.1093/Nar/Gkt499 |
0.401 |
|
| 2013 |
Armant O, März M, Schmidt R, Ferg M, Diotel N, Ertzer R, Bryne JC, Yang L, Baader I, Reischl M, Legradi J, Mikut R, Stemple D, van IJcken W, van der Sloot A, ... Lenhard B, et al. Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. Developmental Biology. 380: 351-62. PMID 23684812 DOI: 10.1016/J.Ydbio.2013.05.006 |
0.499 |
|
| 2013 |
Thongjuea S, Stadhouders R, Grosveld FG, Soler E, Lenhard B. r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data. Nucleic Acids Research. 41: e132. PMID 23671339 DOI: 10.1093/Nar/Gkt373 |
0.429 |
|
| 2013 |
Ghamari A, van de Corput MP, Thongjuea S, van Cappellen WA, van Ijcken W, van Haren J, Soler E, Eick D, Lenhard B, Grosveld FG. In vivo live imaging of RNA polymerase II transcription factories in primary cells. Genes & Development. 27: 767-77. PMID 23592796 DOI: 10.1101/Gad.216200.113 |
0.406 |
|
| 2013 |
Sheffield NC, Thurman RE, Song L, Safi A, Stamatoyannopoulos JA, Lenhard B, Crawford GE, Furey TS. Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions. Genome Research. 23: 777-88. PMID 23482648 DOI: 10.1101/Gr.152140.112 |
0.46 |
|
| 2013 |
Mylona A, Andrieu-Soler C, Thongjuea S, Martella A, Soler E, Jorna R, Hou J, Kockx C, van Ijcken W, Lenhard B, Grosveld F. Genome-wide analysis shows that Ldb1 controls essential hematopoietic genes/pathways in mouse early development and reveals novel players in hematopoiesis. Blood. 121: 2902-13. PMID 23390196 DOI: 10.1182/Blood-2012-11-467654 |
0.453 |
|
| 2013 |
Danks G, Campsteijn C, Parida M, Butcher S, Doddapaneni H, Fu B, Petrin R, Metpally R, Lenhard B, Wincker P, Chourrout D, Thompson EM, Manak JR. OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. Nucleic Acids Research. 41: D845-53. PMID 23185044 DOI: 10.1093/Nar/Gks1159 |
0.517 |
|
| 2012 |
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, ... ... Lenhard B, et al. The accessible chromatin landscape of the human genome. Nature. 489: 75-82. PMID 22955617 DOI: 10.1038/Nature11232 |
0.467 |
|
| 2012 |
van Riel B, Pakozdi T, Brouwer R, Monteiro R, Tuladhar K, Franke V, Bryne JC, Jorna R, Rijkers EJ, van Ijcken W, Andrieu-Soler C, Demmers J, Patient R, Soler E, Lenhard B, et al. A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells. Molecular and Cellular Biology. 32: 3814-22. PMID 22801375 DOI: 10.1128/Mcb.05938-11 |
0.427 |
|
| 2012 |
Carvalho RH, Haberle V, Hou J, van Gent T, Thongjuea S, van Ijcken W, Kockx C, Brouwer R, Rijkers E, Sieuwerts A, Foekens J, van Vroonhoven M, Aerts J, Grosveld F, Lenhard B, et al. Genome-wide DNA methylation profiling of non-small cell lung carcinomas. Epigenetics & Chromatin. 5: 9. PMID 22726460 DOI: 10.1186/1756-8935-5-9 |
0.366 |
|
| 2012 |
Sleutels F, Soochit W, Bartkuhn M, Heath H, Dienstbach S, Bergmaier P, Franke V, Rosa-Garrido M, van de Nobelen S, Caesar L, van der Reijden M, Bryne JC, van Ijcken W, Grootegoed JA, Delgado MD, ... Lenhard B, et al. The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner. Epigenetics & Chromatin. 5: 8. PMID 22709888 DOI: 10.1186/1756-8935-5-8 |
0.507 |
|
| 2012 |
Haberle V, Lenhard B. Dissecting genomic regulatory elements in vivo. Nature Biotechnology. 30: 504-6. PMID 22678387 DOI: 10.1038/Nbt.2266 |
0.422 |
|
| 2012 |
Schroder K, Irvine KM, Taylor MS, Bokil NJ, Le Cao KA, Masterman KA, Labzin LI, Semple CA, Kapetanovic R, Fairbairn L, Akalin A, Faulkner GJ, Baillie JK, Gongora M, Daub CO, ... ... Lenhard B, et al. Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages. Proceedings of the National Academy of Sciences of the United States of America. 109: E944-53. PMID 22451944 DOI: 10.1073/Pnas.1110156109 |
0.413 |
|
| 2012 |
Lenhard B, Sandelin A, Carninci P. Metazoan promoters: emerging characteristics and insights into transcriptional regulation. Nature Reviews. Genetics. 13: 233-45. PMID 22392219 DOI: 10.1038/Nrg3163 |
0.476 |
|
| 2012 |
Plessy C, Pascarella G, Bertin N, Akalin A, Carrieri C, Vassalli A, Lazarevic D, Severin J, Vlachouli C, Simone R, Faulkner GJ, Kawai J, Daub CO, Zucchelli S, Hayashizaki Y, ... ... Lenhard B, et al. Promoter architecture of mouse olfactory receptor genes. Genome Research. 22: 486-97. PMID 22194471 DOI: 10.1101/Gr.126201.111 |
0.475 |
|
| 2012 |
Stadhouders R, Thongjuea S, Andrieu-Soler C, Palstra RJ, Bryne JC, van den Heuvel A, Stevens M, de Boer E, Kockx C, van der Sloot A, van den Hout M, van Ijcken W, Eick D, Lenhard B, Grosveld F, et al. Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development. The Embo Journal. 31: 986-99. PMID 22157820 DOI: 10.1038/Emboj.2011.450 |
0.455 |
|
| 2012 |
Taniya T, Tanaka S, Yamaguchi-Kabata Y, Hanaoka H, Yamasaki C, Maekawa H, Barrero RA, Lenhard B, Datta MW, Shimoyama M, Bumgarner R, Chakraborty R, Hopkinson I, Jia L, Hide W, et al. A prioritization analysis of disease association by data-mining of functional annotation of human genes. Genomics. 99: 1-9. PMID 22019378 DOI: 10.1016/J.Ygeno.2011.10.002 |
0.364 |
|
| 2011 |
Fredman D, Dong X, Lenhard B. Making enhancers from spare parts of the genome. Genome Biology. 12: 138. PMID 22206586 DOI: 10.1186/Gb-2011-12-12-138 |
0.744 |
|
| 2011 |
Ribeiro de Almeida C, Stadhouders R, de Bruijn MJ, Bergen IM, Thongjuea S, Lenhard B, van Ijcken W, Grosveld F, Galjart N, Soler E, Hendriks RW. The DNA-binding protein CTCF limits proximal Vκ recombination and restricts κ enhancer interactions to the immunoglobulin κ light chain locus. Immunity. 35: 501-13. PMID 22035845 DOI: 10.1016/J.Immuni.2011.07.014 |
0.392 |
|
| 2011 |
Royo JL, Hidalgo C, Roncero Y, Seda MA, Akalin A, Lenhard B, Casares F, Gómez-Skarmeta JL. Dissecting the transcriptional regulatory properties of human chromosome 16 highly conserved non-coding regions. Plos One. 6: e24824. PMID 21935474 DOI: 10.1371/Journal.Pone.0024824 |
0.381 |
|
| 2011 |
Engelen E, Akinci U, Bryne JC, Hou J, Gontan C, Moen M, Szumska D, Kockx C, van Ijcken W, Dekkers DH, Demmers J, Rijkers EJ, Bhattacharya S, Philipsen S, Pevny LH, ... ... Lenhard B, et al. Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes. Nature Genetics. 43: 607-11. PMID 21532573 DOI: 10.1038/Ng.825 |
0.407 |
|
| 2010 |
Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C, Cañestro C, Bouquet JM, Danks G, Poulain J, Campsteijn C, Adamski M, ... ... Lenhard B, et al. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science (New York, N.Y.). 330: 1381-5. PMID 21097902 DOI: 10.1126/Science.1194167 |
0.452 |
|
| 2010 |
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, ... ... Lenhard B, et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell. 140: 744-52. PMID 20211142 DOI: 10.1016/J.Cell.2010.01.044 |
0.415 |
|
| 2010 |
Soler E, Andrieu-Soler C, de Boer E, Bryne JC, Thongjuea S, Stadhouders R, Palstra RJ, Stevens M, Kockx C, van Ijcken W, Hou J, Steinhoff C, Rijkers E, Lenhard B, Grosveld F. The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation. Genes & Development. 24: 277-89. PMID 20123907 DOI: 10.1101/Gad.551810 |
0.455 |
|
| 2010 |
Dong X, Akalin A, Sharma Y, Lenhard B. Translog, a web browser for studying the expression divergence of homologous genes. Bmc Bioinformatics. 11: S59. PMID 20122234 DOI: 10.1186/1471-2105-11-S1-S59 |
0.759 |
|
| 2010 |
Ragvin A, Moro E, Fredman D, Navratilova P, Drivenes Ø, Engström PG, Alonso ME, de la Calle Mustienes E, Gómez Skarmeta JL, Tavares MJ, Casares F, Manzanares M, van Heyningen V, Molven A, Njølstad PR, ... ... Lenhard B, et al. Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3. Proceedings of the National Academy of Sciences of the United States of America. 107: 775-80. PMID 20080751 DOI: 10.1073/Pnas.0911591107 |
0.363 |
|
| 2010 |
Navratilova P, Fredman D, Lenhard B, Becker TS. Regulatory divergence of the duplicated chromosomal loci sox11a/b by subpartitioning and sequence evolution of enhancers in zebrafish Molecular Genetics and Genomics. 283: 171-184. PMID 20039180 DOI: 10.1007/S00438-009-0503-1 |
0.466 |
|
| 2010 |
Portales-Casamar E, Thongjuea S, Kwon AT, Arenillas D, Zhao X, Valen E, Yusuf D, Lenhard B, Wasserman WW, Sandelin A. JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Research. 38: D105-10. PMID 19906716 DOI: 10.1093/Nar/Gkp950 |
0.638 |
|
| 2009 |
Dong X, Navratilova P, Fredman D, Drivenes Ø, Becker TS, Lenhard B. Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons Nucleic Acids Research. 38: 1071-1085. PMID 19969543 DOI: 10.1093/Nar/Gkp1124 |
0.735 |
|
| 2009 |
Roider HG, Lenhard B, Kanhere A, Haas SA, Vingron M. CpG-depleted promoters harbor tissue-specific transcription factor binding signals - Implications for motif overrepresentation analyses Nucleic Acids Research. 37: 6305-6315. PMID 19736212 DOI: 10.1093/Nar/Gkp682 |
0.471 |
|
| 2009 |
Dong X, Fredman D, Lenhard B. Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes. Genome Biology. 10: R86. PMID 19698106 DOI: 10.1186/Gb-2009-10-8-R86 |
0.753 |
|
| 2009 |
Bessa J, Tena JJ, de la Calle-Mustienes E, Fernández-Miñán A, Naranjo S, Fernández A, Montoliu L, Akalin A, Lenhard B, Casares F, Gómez-Skarmeta JL. Zebrafish enhancer detection (ZED) vector: a new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 238: 2409-17. PMID 19653328 DOI: 10.1002/Dvdy.22051 |
0.463 |
|
| 2009 |
Fredman D, Engström PG, Lenhard B. Web-based tools and approaches to study long-range gene regulation in Metazoa. Briefings in Functional Genomics & Proteomics. 8: 231-42. PMID 19605518 DOI: 10.1093/Bfgp/Elp023 |
0.505 |
|
| 2009 |
Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, ... ... Lenhard B, et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics. 41: 553-62. PMID 19377474 DOI: 10.1038/Ng.375 |
0.459 |
|
| 2009 |
Akalin A, Fredman D, Arner E, Dong X, Bryne JC, Suzuki H, Daub CO, Hayashizaki Y, Lenhard B. Transcriptional features of genomic regulatory blocks. Genome Biology. 10: R38. PMID 19374772 DOI: 10.1186/Gb-2009-10-4-R38 |
0.776 |
|
| 2009 |
Navratilova P, Fredman D, Hawkins TA, Turner K, Lenhard B, Becker TS. Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes. Developmental Biology. 327: 526-40. PMID 19073165 DOI: 10.1016/J.Ydbio.2008.10.044 |
0.454 |
|
| 2008 |
Engström PG, Fredman D, Lenhard B. Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes. Genome Biology. 9: R34. PMID 18279518 DOI: 10.1186/Gb-2008-9-2-R34 |
0.501 |
|
| 2008 |
Kemmer D, Podowski RM, Yusuf D, Brumm J, Cheung W, Wahlestedt C, Lenhard B, Wasserman WW. Gene characterization index: assessing the depth of gene annotation. Plos One. 3: e1440. PMID 18213364 DOI: 10.1371/Journal.Pone.0001440 |
0.656 |
|
| 2008 |
Andersen MC, Engström PG, Lithwick S, Arenillas D, Eriksson P, Lenhard B, Wasserman WW, Odeberg J. In silico detection of sequence variations modifying transcriptional regulation. Plos Computational Biology. 4: e5. PMID 18208319 DOI: 10.1371/Journal.Pcbi.0040005 |
0.674 |
|
| 2008 |
Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, ... ... Lenhard B, et al. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Research. 36: D793-9. PMID 18089548 DOI: 10.1093/Nar/Gkm999 |
0.451 |
|
| 2008 |
Bryne JC, Valen E, Tang MH, Marstrand T, Winther O, da Piedade I, Krogh A, Lenhard B, Sandelin A. JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Research. 36: D102-6. PMID 18006571 DOI: 10.1093/Nar/Gkm955 |
0.351 |
|
| 2007 |
Kikuta H, Fredman D, Rinkwitz S, Lenhard B, Becker TS. Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - A fundamental feature of vertebrate genomes Genome Biology. 8. PMID 18047696 DOI: 10.1186/Gb-2007-8-S1-S4 |
0.528 |
|
| 2007 |
Engström PG, Ho Sui SJ, Drivenes O, Becker TS, Lenhard B. Genomic regulatory blocks underlie extensive microsynteny conservation in insects. Genome Research. 17: 1898-908. PMID 17989259 DOI: 10.1101/Gr.6669607 |
0.518 |
|
| 2007 |
Sheng Y, Engström PG, Lenhard B. Mammalian microRNA prediction through a support vector machine model of sequence and structure. Plos One. 2: e946. PMID 17895987 DOI: 10.1371/Journal.Pone.0000946 |
0.329 |
|
| 2007 |
Becker TS, Lenhard B. The random versus fragile breakage models of chromosome evolution: A matter of resolution Molecular Genetics and Genomics. 278: 487-491. PMID 17851692 DOI: 10.1007/S00438-007-0287-0 |
0.443 |
|
| 2007 |
Sandelin A, Carninci P, Lenhard B, Ponjavic J, Hayashizaki Y, Hume DA. Mammalian RNA polymerase II core promoters: insights from genome-wide studies. Nature Reviews. Genetics. 8: 424-36. PMID 17486122 DOI: 10.1038/Nrg2026 |
0.528 |
|
| 2007 |
Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engström PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, ... ... Lenhard B, et al. Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. Genome Research. 17: 545-55. PMID 17387144 DOI: 10.1101/Gr.6086307 |
0.486 |
|
| 2007 |
Pang KC, Stephen S, Dinger ME, Engström PG, Lenhard B, Mattick JS. RNAdb 2.0--an expanded database of mammalian non-coding RNAs. Nucleic Acids Research. 35: D178-82. PMID 17145715 DOI: 10.1093/Nar/Gkl926 |
0.407 |
|
| 2007 |
Vidal OM, Merino R, Rico-Bautista E, Fernandez-Perez L, Chia DJ, Woelfle J, Ono M, Lenhard B, Norstedt G, Rotwein P, Flores-Morales A. In vivo transcript profiling and phylogenetic analysis identifies suppressor of cytokine signaling 2 as a direct signal transducer and activator of transcription 5b target in liver. Molecular Endocrinology (Baltimore, Md.). 21: 293-311. PMID 17008382 DOI: 10.1210/Me.2006-0096 |
0.469 |
|
| 2007 |
Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CAM, Taylor MS, Engström G PG, Frith MC, Forrest ARR, Alkema WB, Tan SL, Plessy C, Kodzius R, et al. Erratum: Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution Nature Genetics. 39: 1174-1174. DOI: 10.1038/Ng0907-1174B |
0.385 |
|
| 2006 |
Bailey PJ, Klos JM, Andersson E, Karlén M, Källström M, Ponjavic J, Muhr J, Lenhard B, Sandelin A, Ericson J. A global genomic transcriptional code associated with CNS-expressed genes. Experimental Cell Research. 312: 3108-19. PMID 16919269 DOI: 10.1016/J.Yexcr.2006.06.017 |
0.557 |
|
| 2006 |
Ponjavic J, Lenhard B, Kai C, Kawai J, Carninci P, Hayashizaki Y, Sandelin A. Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters. Genome Biology. 7: R78. PMID 16916456 DOI: 10.1186/Gb-2006-7-8-R78 |
0.435 |
|
| 2006 |
Maeda N, Kasukawa T, Oyama R, Gough J, Frith M, Engström PG, Lenhard B, Aturaliya RN, Batalov S, Beisel KW, Bult CJ, Fletcher CF, Forrest AR, Furuno M, Hill D, et al. Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. Plos Genetics. 2: e62. PMID 16683036 DOI: 10.1371/Journal.Pgen.0020062 |
0.447 |
|
| 2006 |
Engström PG, Suzuki H, Ninomiya N, Akalin A, Sessa L, Lavorgna G, Brozzi A, Luzi L, Tan SL, Yang L, Kunarso G, Ng EL, Batalov S, Wahlestedt C, Kai C, ... ... Lenhard B, et al. Complex Loci in human and mouse genomes. Plos Genetics. 2: e47. PMID 16683030 DOI: 10.1371/Journal.Pgen.0020047 |
0.496 |
|
| 2006 |
Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engström PG, Frith MC, Forrest AR, Alkema WB, Tan SL, Plessy C, Kodzius R, et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nature Genetics. 38: 626-35. PMID 16645617 DOI: 10.1038/Ng1789 |
0.529 |
|
| 2006 |
Andersen M, Lenhard B, Whatling C, Eriksson P, Odeberg J. Alternative promoter usage of the membrane glycoprotein CD36. Bmc Molecular Biology. 7: 8. PMID 16515687 DOI: 10.1186/1471-2199-7-8 |
0.323 |
|
| 2006 |
Ǵmez-Skarmeta JL, Lenhard B, Becker TS. New technologies, new findings, and new concepts in the study of vertebrate cis-regulatory sequences Developmental Dynamics. 235: 870-885. PMID 16395688 DOI: 10.1002/Dvdy.20659 |
0.525 |
|
| 2006 |
Vlieghe D, Sandelin A, De Bleser PJ, Vleminckx K, Wasserman WW, van Roy F, Lenhard B. A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. Nucleic Acids Research. 34: D95-7. PMID 16381983 DOI: 10.1093/Nar/Gkj115 |
0.666 |
|
| 2005 |
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, ... ... Lenhard B, et al. Antisense transcription in the mammalian transcriptome. Science (New York, N.Y.). 309: 1564-6. PMID 16141073 DOI: 10.1126/Science.1112009 |
0.476 |
|
| 2005 |
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, et al. The transcriptional landscape of the mammalian genome. Science (New York, N.Y.). 309: 1559-63. PMID 16141072 DOI: 10.1126/Science.1112014 |
0.514 |
|
| 2005 |
Ståhlberg N, Merino R, Hernández LH, Fernández-Pérez L, Sandelin A, Engström P, Tollet-Egnell P, Lenhard B, Flores-Morales A. Exploring hepatic hormone actions using a compilation of gene expression profiles. Bmc Physiology. 5: 8. PMID 15953391 DOI: 10.1186/1472-6793-5-8 |
0.354 |
|
| 2005 |
Mottagui-Tabar S, Faghihi MA, Mizuno Y, Engström PG, Lenhard B, Wasserman WW, Wahlestedt C. Identification of functional SNPs in the 5-prime flanking sequences of human genes. Bmc Genomics. 6: 18. PMID 15717931 DOI: 10.1186/1471-2164-6-18 |
0.63 |
|
| 2005 |
Pang KC, Stephen S, Engström PG, Tajul-Arifin K, Chen W, Wahlestedt C, Lenhard B, Hayashizaki Y, Mattick JS. RNAdb--a comprehensive mammalian noncoding RNA database. Nucleic Acids Research. 33: D125-30. PMID 15608161 DOI: 10.1093/Nar/Gki089 |
0.394 |
|
| 2004 |
Kemmer D, Faxén M, Hodges E, Lim J, Herzog E, Ljungström E, Lundmark A, Olsen MK, Podowski R, Sonnhammer EL, Nilsson P, Reimers M, Lenhard B, Roberds SL, Wahlestedt C, et al. Exploring the foundation of genomics: a northern blot reference set for the comparative analysis of transcript profiling technologies. Comparative and Functional Genomics. 5: 584-95. PMID 18629180 DOI: 10.1002/Cfg.443 |
0.645 |
|
| 2004 |
Sandelin A, Bailey P, Bruce S, Engström PG, Klos JM, Wasserman WW, Ericson J, Lenhard B. Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. Bmc Genomics. 5: 99. PMID 15613238 DOI: 10.1186/1471-2164-5-99 |
0.713 |
|
| 2004 |
Katzov H, Bennet AM, Kehoe P, Wiman B, Gatz M, Blennow K, Lenhard B, Pedersen NL, de Faire U, Prince JA. A cladistic model of ACE sequence variation with implications for myocardial infarction, Alzheimer disease and obesity. Human Molecular Genetics. 13: 2647-57. PMID 15367486 DOI: 10.1093/Hmg/Ddh286 |
0.307 |
|
| 2004 |
Alkema WB, Lenhard B, Wasserman WW. Regulog analysis: detection of conserved regulatory networks across bacteria: application to Staphylococcus aureus. Genome Research. 14: 1362-73. PMID 15231752 DOI: 10.1101/Gr.2242604 |
0.647 |
|
| 2004 |
Sandelin A, Wasserman WW, Lenhard B. ConSite: web-based prediction of regulatory elements using cross-species comparison. Nucleic Acids Research. 32: W249-52. PMID 15215389 DOI: 10.1093/Nar/Gkh372 |
0.627 |
|
| 2004 |
Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, ... ... Lenhard B, et al. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. Plos Biology. 2: e162. PMID 15103394 DOI: 10.1371/Journal.Pbio.0020162 |
0.461 |
|
| 2004 |
Fredman D, Munns G, Rios D, Sjöholm F, Siegfried M, Lenhard B, Lehväslaiho H, Brookes AJ. HGVbase: a curated resource describing human DNA variation and phenotype relationships Nucleic Acids Research. 32: 516-519. PMID 14681471 DOI: 10.1093/Nar/Gkh111 |
0.358 |
|
| 2004 |
Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B. JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Research. 32: D91-4. PMID 14681366 DOI: 10.1093/Nar/Gkh012 |
0.687 |
|
| 2004 |
Geijer J, Lenhard B, Merino-Martinez R, Norstedt G, Flores-Morales A. Grid Computing For The Analysis Of Regulatory Elements In Co-Regulated Sets Of Genes Parallel Processing Letters. 14: 137-150. DOI: 10.1142/S0129626404001799 |
0.425 |
|
| 2003 |
Sandelin A, Höglund A, Lenhard B, Wasserman WW. Integrated analysis of yeast regulatory sequences for biologically linked clusters of genes Functional and Integrative Genomics. 3: 125-134. PMID 12827523 DOI: 10.1007/S10142-003-0086-6 |
0.698 |
|
| 2003 |
Lenhard B, Wahlestedt C, Wasserman WW. GeneLynx mouse: integrated portal to the mouse genome. Genome Research. 13: 1501-4. PMID 12819149 DOI: 10.1101/Gr.951403 |
0.662 |
|
| 2003 |
Lenhard B, Sandelin A, Mendoza L, Engström P, Jareborg N, Wasserman WW. Identification of conserved regulatory elements by comparative genome analysis. Journal of Biology. 2: 13. PMID 12760745 DOI: 10.1186/1475-4924-2-13 |
0.664 |
|
| 2002 |
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, ... ... Lenhard B, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 420: 563-73. PMID 12466851 DOI: 10.1038/Nature01266 |
0.462 |
|
| 2002 |
Lenhard B, Wasserman WW. TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics (Oxford, England). 18: 1135-6. PMID 12176838 DOI: 10.1093/Bioinformatics/18.8.1135 |
0.606 |
|
| 2001 |
Lenhard B, Hayes WS, Wasserman WW. GeneLynx: A Gene-Centric Portal to the Human Genome Genome Research. 11: 2151-2157. PMID 11731507 DOI: 10.1101/Gr.199801 |
0.438 |
|
| 1998 |
Lenhard B, Prætorius-Ibba M, Filipic S, Söll D, Weygand-Durasevic I. C-terminal truncation of yeast SerRS is toxic for Saccharomyces cerevisiae due to altered mechanism of substrate recognition. Febs Letters. 439: 235-240. PMID 9845329 DOI: 10.1016/S0014-5793(98)01376-3 |
0.367 |
|
| 1997 |
Lenhard B, Filipić S, Landeka I, Škrtić I, Söll D, Weygand-Durašević I. Defining the Active Site of Yeast Seryl-tRNA Synthetase MUTATIONS IN MOTIF 2 LOOP RESIDUES AFFECT tRNA-DEPENDENT AMINO ACID RECOGNITION Journal of Biological Chemistry. 272: 1136-1141. PMID 8995413 DOI: 10.1074/Jbc.272.2.1136 |
0.435 |
|
| 1996 |
Weygand-Durasevic I, Lenhard B, Filipic S, Söll D. The C-terminal Extension of Yeast Seryl-tRNA Synthetase Affects Stability of the Enzyme and Its Substrate Affinity Journal of Biological Chemistry. 271: 2455-2461. PMID 8576207 DOI: 10.1074/Jbc.271.5.2455 |
0.384 |
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