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Deanne Marie Taylor, Ph.D. - Publications

Affiliations: 
2000-2001 Bioinformatics Group Pfizer Global R&D 
 2001-2006 Bioinformatics Group Serono Laboratories 
 2003-2014 Bioinformatics Graduate Program, Rabb Graduate School of Professional Studies Brandeis University, Waltham, MA, United States 
 2006-2008 Department of Biostatistics Harvard School of Public Health, Boston, MA, United States 
 2008-2014 Department of Obstetrics, Gynecology and Reproductive Science Rutgers University and RMA of NJ 
 2014- Department of Biomedical and Health Informatics Children’s Hospital of Philadelphia, Philadelphia, PA, United States 
 2015- Department of Pediatrics University of Pennsylvania Perelman School of Medicine 
Area:
Bioinformatics, Computational Biology, Biophysics, Physical chemistry
Website:
https://scholar.google.com/citations?user=42OPmz0AAAAJ&hl=en
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Winkelman JT, Pukhrambam C, Vvedenskaya IO, Zhang Y, Taylor DM, Shah P, Ebright RH, Nickels BE. XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing. Molecular Cell. PMID 32750314 DOI: 10.1016/J.Molcel.2020.07.006  0.727
2020 Pastor S, Tran O, Jin A, Carrado D, Silva BA, Uppuluri L, Abid HZ, Young E, Crowley TB, Bailey AG, McGinn DE, McDonald-McGinn DM, Zackai EH, Xie M, Taylor D, et al. Optical mapping of the 22q11.2DS region reveals complex repeat structures and preferred locations for non-allelic homologous recombination (NAHR). Scientific Reports. 10: 12235. PMID 32699385 DOI: 10.1038/S41598-020-69134-4  0.739
2020 Sewda A, Agopian AJ, Goldmuntz E, Hakonarson H, Morrow BE, Musfee F, Taylor D, Mitchell LE. Gene-based analyses of the maternal genome implicate maternal effect genes as risk factors for conotruncal heart defects. Plos One. 15: e0234357. PMID 32516339 DOI: 10.1371/Journal.Pone.0234357  0.324
2020 Zhang Y, Kim MS, Reichenberger ER, Stear B, Taylor DM. Scedar: A scalable Python package for single-cell RNA-seq exploratory data analysis. Plos Computational Biology. 16: e1007794. PMID 32339163 DOI: 10.1371/Journal.Pcbi.1007794  0.763
2020 McDonald JT, Stainforth R, Miller J, Cahill T, da Silveira WA, Rathi KS, Hardiman G, Taylor D, Costes SV, Chauhan V, Meller R, Beheshti A. NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models. Cancers. 12. PMID 32045996 DOI: 10.3390/Cancers12020381  0.631
2020 Beheshti A, Chakravarty K, Fogle H, Fazelinia H, Silveira WAD, Boyko V, Polo SL, Saravia-Butler AM, Hardiman G, Taylor D, Galazka JM, Costes SV. Author Correction: Multi-omics analysis of multiple missions to space reveal a theme of lipid dysregulation in mouse liver. Scientific Reports. 10: 1517. PMID 31988426 DOI: 10.1038/S41598-020-58490-W  0.619
2019 Beheshti A, Chakravarty K, Fogle H, Fazelinia H, Silveira WAD, Boyko V, Polo SL, Saravia-Butler AM, Hardiman G, Taylor D, Galazka JM, Costes SV. Multi-omics analysis of multiple missions to space reveal a theme of lipid dysregulation in mouse liver. Scientific Reports. 9: 19195. PMID 31844325 DOI: 10.1038/S41598-019-55869-2  0.625
2019 Mandl KD, Glauser T, Krantz ID, Avillach P, Bartels A, Beggs AH, Biswas S, Bourgeois FT, Corsmo J, Dauber A, Devkota B, Fleisher GR, Heath AP, Helbig I, Hirschhorn JN, ... ... Taylor DM, et al. Correction: The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 31772351 DOI: 10.1038/s41436-019-0711-y  0.64
2019 Harrington CT, Sotillo E, Robert A, Hayer KE, Bogusz AM, Psathas J, Yu D, Taylor D, Dang CV, Klein PS, Hogarty MD, Geoerger B, El-Deiry WS, Wiels J, Thomas-Tikhonenko A. Correction: Transient stabilization, rather than inhibition, of MYC amplifies extrinsic apoptosis and therapeutic responses in refractory B-cell lymphoma. Leukemia. PMID 31758088 DOI: 10.1038/S41375-019-0650-2  0.727
2019 Asnani M, Hayer KE, Naqvi AS, Zheng S, Yang SY, Oldridge D, Ibrahim F, Maragkakis M, Gazzara MR, Black KL, Bagashev A, Taylor D, Mourelatos Z, Grupp SA, Barrett D, et al. Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19. Leukemia. PMID 31591467 DOI: 10.1038/S41375-019-0580-Z  0.721
2019 Mandl KD, Glauser T, Krantz ID, Avillach P, Bartels A, Beggs AH, Biswas S, Bourgeois FT, Corsmo J, Dauber A, Devkota B, Fleisher GR, Heath AP, Helbig I, Hirschhorn JN, ... ... Taylor DM, et al. The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 31481752 DOI: 10.1038/S41436-019-0646-3  0.677
2019 Sewda A, Agopian AJ, Goldmuntz E, Hakonarson H, Morrow BE, Taylor D, Mitchell LE. Gene-based genome-wide association studies and meta-analyses of conotruncal heart defects. Plos One. 14: e0219926. PMID 31314787 DOI: 10.1371/Journal.Pone.0219926  0.329
2019 Raman P, Zimmerman S, Rathi KS, de Torrenté L, Sarmady M, Wu C, Leipzig J, Taylor DM, Tozeren A, Mar JC. A comparison of survival analysis methods for cancer gene expression RNA-Sequencing data. Cancer Genetics. 235: 1-12. PMID 31296308 DOI: 10.1016/J.Cancergen.2019.04.004  0.753
2019 Xie HM, Taylor DM, Zhang Z, McDonald-McGinn DM, Zackai EH, Stambolian D, Hakonarson H, Morrow BE, Emanuel BS, Goldmuntz E. Copy number variations in individuals with conotruncal heart defects reveal some shared developmental pathways irrespective of 22q11.2 deletion status. Birth Defects Research. PMID 31222980 DOI: 10.1002/Bdr2.1534  0.55
2019 Kaplinski M, Taylor D, Mitchell LE, Hammond DA, Goldmuntz E, Agopian AJ. The association of elevated maternal genetic risk scores for hypertension, type 2 diabetes and obesity and having a child with a congenital heart defect. Plos One. 14: e0216477. PMID 31141530 DOI: 10.1371/Journal.Pone.0216477  0.725
2019 Taylor DM, Aronow BJ, Tan K, Bernt K, Salomonis N, Greene CS, Frolova A, Henrickson SE, Wells A, Pei L, Jaiswal JK, Whitsett J, Hamilton KE, MacParland SA, Kelsen J, et al. The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution. Developmental Cell. PMID 30930166 DOI: 10.1016/J.Devcel.2019.03.001  0.719
2019 Harrington CT, Sotillo E, Robert A, Hayer KE, Bogusz AM, Psathas J, Yu D, Taylor D, Dang CV, Klein P, Hogarty MD, Geoerger B, El-Deiry WS, Wiels J, Thomas-Tikhonenko A. Transient stabilization, rather than inhibition, of MYC amplifies extrinsic apoptosis and therapeutic responses in refractory B-cell lymphoma. Leukemia. PMID 30914792 DOI: 10.1038/s41375-019-0454-4  0.721
2019 Cai T, Black KL, Naqvi AS, Taylor D, Zhao M, Yuan Q, Sugita M, Galetto R, Gouble A, Smith JNP, Cavazos A, Han L, Zhang Q, Kuruvilla VM, Ma H, et al. Efficacy Proof of Concept for Allogeneic CD123 Targeting CAR T-Cells Against Primary Blastic Plasmacytoid Dendritic Cell Neoplasm (BPDCN): Efficient Control of Tumor Progression in PDX Model and Potential Loss of CD123 Expression in Relapsed Disease Blood. 134: 2659-2659. DOI: 10.1182/Blood-2019-126869  0.593
2019 Zhu Y, Brown M, Devkota B, Farrow B, Gavrilovic B, Heath A, Hernandez K, Kelman A, Killada P, Kim MC, Kolbman D, Koptyra M, Kovacevic M, Leerkes M, Lubneuski A, ... ... Taylor D, et al. Abstract 2465: Genomic harmonization of the Data Resource Center for Gabriella Miller Kids First Pediatric Research Program Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-2465  0.739
2019 Heath AP, Taylor DM, Zhu Y, Raman P, Lilly J, Storm P, Waanders AJ, Ferretti V, Yung C, Mattioni M, Davis-Dusenbery B, Flamig ZL, Grossman R, Volchenboum SL, Mueller S, et al. Abstract 2464: Gabriella Miller Kids First Data Resource Center: Harmonizing clinical and genomic data to support childhood cancer and structural birth defect research Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-2464  0.595
2019 Goel N, Hopkins C, Ruggieri M, Zhang Z, Taylor DM, Allison KC. 0036 The Impact of Nighttime Eating: A Randomized Controlled Trial of Daytime vs. Delayed Eating on Weight and Metabolism in Adults of Normal Weight Sleep. 42. DOI: 10.1093/Sleep/Zsz067.035  0.301
2019 Heath A, Raman P, Zhu Y, Lilly J, Taylor D, Storm P, Waanders A, Ferretti V, Mattioni M, Davis-Dusenbery B, Flamig Z, Grossman R, Volchenboum S, Mueller S, Nazarian J, et al. Tmod-19. Gabriella Miller Kids First Data Resource Center: Large-Scale Harmonized Clinical And Genomic Data Platform To Support Childhood Cancer And Structural Birth Defect Research Neuro-Oncology. 21. DOI: 10.1093/Neuonc/Noz036.256  0.596
2018 Black KL, Naqvi AS, Asnani M, Hayer KE, Yang SY, Gillespie E, Bagashev A, Pillai V, Tasian SK, Gazzara MR, Carroll M, Taylor D, Lynch KW, Barash Y, Thomas-Tikhonenko A. Aberrant splicing in B-cell acute lymphoblastic leukemia. Nucleic Acids Research. PMID 30357359 DOI: 10.1093/Nar/Gky946  0.753
2018 Vvedenskaya IO, Bird JG, Zhang Y, Zhang Y, Jiao X, Barvík I, Krásný L, Kiledjian M, Taylor DM, Ebright RH, Nickels BE. CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5' Capping with NAD. Molecular Cell. PMID 29681497 DOI: 10.1016/J.Molcel.2018.03.014  0.73
2018 Guha M, Srinivasan S, Raman P, Jiang Y, Kaufman BA, Taylor D, Dong D, Chakrabarti R, Picard M, Carstens RP, Kijima Y, Feldman M, Avadhani NG. Aggressive triple negative breast cancers have unique molecular signature on the basis of mitochondrial genetic and functional defects. Biochimica Et Biophysica Acta. PMID 29309924 DOI: 10.1016/J.Bbadis.2018.01.002  0.585
2018 Heath AP, Raman P, Zhu Y, Lilly JV, Taylor D, Storm PB, Waanders AJ, Volchenboum S, Stein L, Ellrott K, Margolin A, Davis-Dusenbery B, Grossman R, Ferretti V, Mueller S, et al. TBIO-27. GABRIELLA MILLER KIDS FIRST DATA RESOURCE CENTER ADVANCING GENETIC RESEARCH IN CHILDHOOD CANCER AND STRUCTURAL BIRTH DEFECTS THROUGH LARGE SCALE INTEGRATED DATA-DRIVEN DISCOVERY AND CLOUD-BASED PLATFORMS FOR COLLABORATIVE ANALYSIS Neuro-Oncology. 20: i186-i186. DOI: 10.1093/Neuonc/Noy059.715  0.591
2017 de Torrente L, Zimmerman S, Taylor D, Hasegawa Y, Wells CA, Mar JC. pathVar: a new method for pathway-based interpretation of gene expression variability. Peerj. 5: e3334. PMID 28560097 DOI: 10.7717/Peerj.3334  0.316
2017 Xie HM, Werner P, Stambolian D, Bailey-Wilson JE, Hakonarson H, White PS, Taylor DM, Goldmuntz E. Rare copy number variants in patients with congenital conotruncal heart defects. Birth Defects Research. 109: 271-295. PMID 28398664 DOI: 10.1002/Bdra.23609  0.47
2016 Vvedenskaya IO, Vahedian-Movahed H, Zhang Y, Taylor DM, Ebright RH, Nickels BE. Interactions between RNA polymerase and the core recognition element are a determinant of transcription start site selection. Proceedings of the National Academy of Sciences of the United States of America. PMID 27162333 DOI: 10.1073/Pnas.1603271113  0.727
2016 Winkelman JT, Vvedenskaya IO, Zhang Y, Zhang Y, Bird JG, Taylor DM, Gourse RL, Ebright RH, Nickels BE. Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection. Science (New York, N.Y.). 351: 1090-3. PMID 26941320 DOI: 10.1126/Science.Aad6881  0.72
2015 Vvedenskaya IO, Zhang Y, Goldman SR, Valenti A, Visone V, Taylor DM, Ebright RH, Nickels BE. Massively Systematic Transcript End Readout, "MASTER": Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields. Molecular Cell. PMID 26626484 DOI: 10.1016/J.Molcel.2015.10.029  0.727
2015 Hasegawa Y, Taylor D, Ovchinnikov DA, Wolvetang EJ, de Torrenté L, Mar JC. Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development. Plos Genetics. 11: e1005428. PMID 26288249 DOI: 10.1371/Journal.Pgen.1005428  0.347
2014 Gueye NA, Jalas C, Tao X, Taylor D, Scott RT, Treff NR. Improved sensitivity to detect recombination using qPCR for Dyskeratosis Congenita PGD. Journal of Assisted Reproduction and Genetics. 31: 1227-30. PMID 25099625 DOI: 10.1007/S10815-014-0298-9  0.304
2014 Fedick AM, Eckert K, Thompson K, Forman EJ, Devkota B, Treff NR, Taylor D, Scott RT. Lack of association of KATNAL1 gene sequence variants and azoospermia in humans. Journal of Assisted Reproduction and Genetics. 31: 1065-71. PMID 24913027 DOI: 10.1007/S10815-014-0269-1  0.687
2014 Gueye NA, Devkota B, Taylor D, Pfundt R, Scott RT, Treff NR. Uniparental disomy in the human blastocyst is exceedingly rare. Fertility and Sterility. 101: 232-6. PMID 24083874 DOI: 10.1016/J.Fertnstert.2013.08.051  0.668
2013 Treff NR, Fedick A, Tao X, Devkota B, Taylor D, Scott RT. Evaluation of targeted next-generation sequencing-based preimplantation genetic diagnosis of monogenic disease. Fertility and Sterility. 99: 1377-1384.e6. PMID 23312231 DOI: 10.1016/J.Fertnstert.2012.12.018  0.672
2013 Pepe R, Forman E, Taylor D, Devkota B, Treff N, Scott R. Creation of a DNA bank from patients with infertility: a powerful resource for advancing the biology of reproduction Fertility and Sterility. 100: S484-S485. DOI: 10.1016/J.Fertnstert.2013.07.397  0.648
2013 Forman E, Taylor D, Devkota B, Tao X, Treff N, Scott R. Targeted deep sequencing of maternal cohesin genes as putative biomarkers for increased risk of embryonic aneuploidy Fertility and Sterility. 100: S53. DOI: 10.1016/J.Fertnstert.2013.07.1844  0.676
2012 Forman EJ, Su J, Taylor D, Devkota B, Treff N, Scott R. Oocyte vitrification does not result in a decrement in mitochondrial DNA (mtDNA) copy number in resulting embryos: a paired randomized controlled trial (RCT) Fertility and Sterility. 98. DOI: 10.1016/J.Fertnstert.2012.07.325  0.649
2012 Hong K, Taylor D, Forman E, Tao X, Treff N, Scott R. Development of a novel next-gen sequencing (NGS) methodology for accurate characterization of genome-wide mitochondrial heteroplasmy in human embryos Fertility and Sterility. 98: S58-S59. DOI: 10.1016/J.Fertnstert.2012.07.208  0.305
2012 Fedick A, Tao X, Devkota B, Taylor D, Scott R, Treff N. Development and validation of next-generation sequencing (NGS) based PGD Fertility and Sterility. 98: S54. DOI: 10.1016/J.Fertnstert.2012.07.196  0.663
2012 Shastri S, Werner M, Devkota B, Taylor D, Treff N, Scott R. Comparison of clinical outcomes between genetically similar groups of in vitro fertilization patients Fertility and Sterility. 98: S26. DOI: 10.1016/J.Fertnstert.2012.07.095  0.651
2010 Taylor D, Pike J, Kasabwala K, Northrop L, Treff N, Scott R. A genome-wide association scan identifies several maternal susceptbility loci for embryo aneuploidy Fertility and Sterility. 94: S183. DOI: 10.1016/J.Fertnstert.2010.07.713  0.307
2002 Taylor DM, Ramamoorthy A. Coherence transfer through homonuclear dipolar coupling in an unoriented two spin-1/2 solid-state system Journal of Molecular Structure. 602: 115-124. DOI: 10.1016/S0022-2860(01)00737-2  0.416
2001 Brender JR, Taylor DM, Ramamoorthy A. Orientation of amide-nitrogen-15 chemical shift tensors in peptides: a quantum chemical study. Journal of the American Chemical Society. 123: 914-22. PMID 11456625 DOI: 10.1021/Ja001980Q  0.622
1999 Taylor DM, Ramamoorthy A. Analysis of dipolar-coupling-mediated coherence transfer in a homonuclear two spin-12 solid-state system Journal of Magnetic Resonance (San Diego, Calif. : 1997). 141: 18-28. PMID 10527739 DOI: 10.1006/Jmre.1999.1893  0.42
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