Duygu Ucar - Publications

2011-2014 Jackson Laboratory for Genomic Medicine 

19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 George J, Uyar A, Young K, Kuffler L, Waldron-Francis K, Marquez E, Ucar D, Trowbridge JJ. Leukaemia cell of origin identified by chromatin landscape of bulk tumour cells. Nature Communications. 7: 12166. PMID 27397025 DOI: 10.1038/Ncomms12166  0.32
2016 Thibodeau A, Márquez EJ, Luo O, Ruan Y, Menghi F, Shin DG, Stitzel ML, Vera-Licona P, Ucar D. QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. Plos Computational Biology. 12: e1004809. PMID 27336171 DOI: 10.1371/Journal.Pcbi.1004809  0.32
2016 Menghi F, Inaki K, Woo X, Kumar PA, Grzeda KR, Malhotra A, Yadav V, Kim H, Marquez EJ, Ucar D, Shreckengast PT, Wagner JP, MacIntyre G, Murthy Karuturi KR, Scully R, et al. The tandem duplicator phenotype as a distinct genomic configuration in cancer. Proceedings of the National Academy of Sciences of the United States of America. PMID 27071093 DOI: 10.1073/Pnas.1520010113  0.32
2016 Zubek J, Stitzel ML, Ucar D, Plewczynski DM. Computational inference of H3K4me3 and H3K27ac domain length. Peerj. 4: e1750. PMID 26989607 DOI: 10.7717/Peerj.1750  0.32
2015 Benayoun BA, Pollina EA, Ucar D, Mahmoudi S, Karra K, Wong ED, Devarajan K, Daugherty AC, Kundaje AB, Mancini E, Hitz BC, Gupta R, Rando TA, Baker JC, Snyder MP, et al. H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency. Cell. 163: 1281-1286. PMID 28930648 DOI: 10.1016/j.cell.2015.10.051  0.32
2015 Stitzel ML, Kycia I, Kursawe R, Ucar D. Transcriptional Regulation of the Pancreatic Islet: Implications for Islet Function. Current Diabetes Reports. 15: 635. PMID 26272056 DOI: 10.1007/S11892-015-0635-0  0.32
2015 Ucar D, Bayarsaihan D. Cell-specific gene promoters are marked by broader spans of H3K4me3 and are associated with robust gene expression patterns. Epigenomics. 7: 129-31. PMID 25942528 DOI: 10.2217/Epi.14.87  0.32
2014 Gupta R, Wills A, Ucar D, Baker J. Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus. Developmental Biology. 395: 38-49. PMID 25205067 DOI: 10.1016/J.Ydbio.2014.08.034  0.32
2014 Benayoun BA, Pollina EA, Ucar D, Mahmoudi S, Karra K, Wong ED, Devarajan K, Daugherty AC, Kundaje AB, Mancini E, Hitz BC, Gupta R, Rando TA, Baker JC, Snyder MP, et al. H3K4me3 breadth is linked to cell identity and transcriptional consistency. Cell. 158: 673-88. PMID 25083876 DOI: 10.1016/J.Cell.2014.06.027  0.32
2013 Webb AE, Pollina EA, Vierbuchen T, Urbán N, Ucar D, Leeman DS, Martynoga B, Sewak M, Rando TA, Guillemot F, Wernig M, Brunet A. FOXO3 shares common targets with ASCL1 genome-wide and inhibits ASCL1-dependent neurogenesis. Cell Reports. 4: 477-91. PMID 23891001 DOI: 10.1016/J.Celrep.2013.06.035  0.32
2013 Rafalski VA, Ho PP, Brett JO, Ucar D, Dugas JC, Pollina EA, Chow LM, Ibrahim A, Baker SJ, Barres BA, Steinman L, Brunet A. Expansion of oligodendrocyte progenitor cells following SIRT1 inactivation in the adult brain. Nature Cell Biology. 15: 614-24. PMID 23644469 DOI: 10.1038/Ncb2735  0.32
2012 Salih DA, Rashid AJ, Colas D, de la Torre-Ubieta L, Zhu RP, Morgan AA, Santo EE, Ucar D, Devarajan K, Cole CJ, Madison DV, Shamloo M, Butte AJ, Bonni A, Josselyn SA, et al. FoxO6 regulates memory consolidation and synaptic function. Genes & Development. 26: 2780-801. PMID 23222102 DOI: 10.1101/Gad.208926.112  0.32
2011 Greer EL, Maures TJ, Ucar D, Hauswirth AG, Mancini E, Lim JP, Benayoun BA, Shi Y, Brunet A. Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans. Nature. 479: 365-71. PMID 22012258 DOI: 10.1038/Nature10572  0.32
2011 Ucar D, Hu Q, Tan K. Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering. Nucleic Acids Research. 39: 4063-75. PMID 21266477 DOI: 10.1093/Nar/Gkr016  0.32
2010 Firpi HA, Ucar D, Tan K. Discover regulatory DNA elements using chromatin signatures and artificial neural network. Bioinformatics (Oxford, England). 26: 1579-86. PMID 20453004 DOI: 10.1093/Bioinformatics/Btq248  0.32
2009 Ucar D, Beyer A, Parthasarathy S, Workman CT. Predicting functionality of protein-DNA interactions by integrating diverse evidence. Bioinformatics (Oxford, England). 25: i137-44. PMID 19477979 DOI: 10.1093/Bioinformatics/Btp213  0.32
2007 Ucar D, Neuhaus I, Ross-MacDonald P, Tilford C, Parthasarathy S, Siemers N, Ji RR. Construction of a reference gene association network from multiple profiling data: application to data analysis. Bioinformatics (Oxford, England). 23: 2716-24. PMID 17846039 DOI: 10.1093/Bioinformatics/Btm423  0.32
2007 Asur S, Ucar D, Parthasarathy S. An ensemble framework for clustering protein-protein interaction networks. Bioinformatics (Oxford, England). 23: i29-40. PMID 17646309 DOI: 10.1093/bioinformatics/btm212  0.32
2007 Yang H, Parthasarathy S, Ucar D. A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories. Algorithms For Molecular Biology : Amb. 2: 3. PMID 17407611 DOI: 10.1186/1748-7188-2-3  0.32
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