Benjamin L Allen - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Hedgehog Signaling in Development and Disease

43/155 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Echevarría-Andino ML, Franks NE, Schrader HE, Hong M, Krauss RS, Allen BL. CDON contributes to Hedgehog-dependent patterning and growth of the developing limb. Developmental Biology. 493: 1-11. PMID 36265686 DOI: 10.1016/j.ydbio.2022.09.011  0.373
2022 Pinskey JM, Hoard TM, Zhao XF, Franks NE, Frank ZC, McMellen AN, Giger RJ, Allen BL. Plexins promote hedgehog signaling through their cytoplasmic GAP activity. Elife. 11. PMID 36169302 DOI: 10.7554/eLife.74750  0.484
2022 Scales MK, Velez-Delgado A, Steele NG, Schrader HE, Stabnick AM, Yan W, Mercado Soto NM, Nwosu ZC, Johnson C, Zhang Y, Salas-Escabillas DJ, Menjivar RE, Maurer HC, Crawford HC, Bednar F, ... ... Allen BL, et al. Combinatorial Gli activity directs immune infiltration and tumor growth in pancreatic cancer. Plos Genetics. 18: e1010315. PMID 35867772 DOI: 10.1371/journal.pgen.1010315  0.335
2022 Kumari A, Li L, Ermilov AN, Franks NE, Dlugosz AA, Allen BL, Mistretta CM. Hedgehog (HH) pathway endogenous antagonist HHIP: unique lingual expression in filiform papillae during homeostasis and ectopic in fungiform papillae during HH signaling inhibition. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 35048440 DOI: 10.1002/dvdy.456  0.465
2021 Marczenke M, Sunaga-Franze DY, Popp O, Althaus IW, Sauer S, Mertins P, Christ A, Allen BL, Willnow TE. GAS1 is required for Notch-dependent facilitation of SHH signaling in the ventral forebrain neuroepithelium. Development (Cambridge, England). PMID 34698766 DOI: 10.1242/dev.200080  0.461
2021 Steele NG, Biffi G, Kemp SB, Zhang Y, Drouillard D, Syu LJ, Hao Y, Oni TE, Brosnan E, Elyada E, Doshi A, Hansma C, Espinoza C, Abbas A, The S, ... ... Allen B, et al. Inhibition of Hedgehog signaling alters fibroblast composition in pancreatic cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33495315 DOI: 10.1158/1078-0432.CCR-20-3715  0.424
2020 Echevarría-Andino ML, Allen BL. The Hedgehog co-receptor BOC differentially regulates SHH signaling during craniofacial development. Development (Cambridge, England). PMID 33060130 DOI: 10.1242/dev.189076  0.436
2019 Engelke MF, Waas B, Kearns SE, Suber A, Boss A, Allen BL, Verhey KJ. Acute Inhibition of Heterotrimeric Kinesin-2 Function Reveals Mechanisms of Intraflagellar Transport in Mammalian Cilia. Current Biology : Cb. PMID 30905605 DOI: 10.1016/J.Cub.2019.02.043  0.311
2018 Orchard P, White JS, Thomas PE, Mychalowych A, Kiseleva A, Hensley J, Allen B, Parker SCJ, Keegan CE. Genome-wide chromatin accessibility and transcriptome profiling show minimal epigenome changes and coordinated transcriptional dysregulation of hedgehog signaling in Danforth's short tail mice. Human Molecular Genetics. PMID 30380057 DOI: 10.1093/Hmg/Ddy378  0.425
2017 Kumari A, Ermilov AN, Grachtchouk M, Dlugosz AA, Allen BL, Bradley RM, Mistretta CM. Recovery of taste organs and sensory function after severe loss from Hedgehog/Smoothened inhibition with cancer drug sonidegib. Proceedings of the National Academy of Sciences of the United States of America. PMID 29133390 DOI: 10.1073/Pnas.1712881114  0.387
2017 Hong M, Srivastava K, Kim S, Allen BL, Leahy DJ, Hu P, Roessler E, Krauss RS, Muenke M. BOC is a modifier gene in holoprosencephaly. Human Mutation. PMID 28677295 DOI: 10.1002/Humu.23286  0.341
2017 Pinskey JM, Franks NE, McMellen AN, Giger RJ, Allen BL. Neuropilin-1 promotes Hedgehog signaling through a novel cytoplasmic motif. The Journal of Biological Chemistry. PMID 28667171 DOI: 10.1074/Jbc.M117.783845  0.55
2016 Zhang H, Kamiya N, Tsuji T, Takeda H, Scott G, Rajderkar S, Ray MK, Mochida Y, Allen B, Lefebvre V, Hung IH, Ornitz DM, Kunieda T, Mishina Y. Elevated Fibroblast Growth Factor Signaling Is Critical for the Pathogenesis of the Dwarfism in Evc2/Limbin Mutant Mice. Plos Genetics. 12: e1006510. PMID 28027321 DOI: 10.1371/Journal.Pgen.1006510  0.447
2016 Ermilov AN, Kumari A, Li L, Joiner AM, Grachtchouk MA, Allen BL, Dlugosz AA, Mistretta CM. Maintenance of Taste Organs Is Strictly Dependent on Epithelial Hedgehog/GLI Signaling. Plos Genetics. 12: e1006442. PMID 27893742 DOI: 10.1371/Journal.Pgen.1006442  0.783
2016 Lorberbaum DS, Ramos AI, Peterson KA, Carpenter BS, Parker DS, De S, Hillers LE, Blake VM, Nishi Y, McFarlane MR, Chiang AC, Kassis JA, Allen BL, McMahon AP, Barolo S. An ancient yet flexible cis-regulatory architecture allows localized Hedgehog tuning by patched/Ptch1. Elife. 5. PMID 27146892 DOI: 10.7554/Elife.13550  0.792
2016 Allen BL. Spinal Cords Built to Scale. Developmental Cell. 37: 108-9. PMID 27093078 DOI: 10.1016/J.Devcel.2016.04.007  0.314
2016 Coffman LG, Choi YJ, McLean K, Allen BL, di Magliano MP, Buckanovich RJ. Human carcinoma-associated mesenchymal stem cells promote ovarian cancer chemotherapy resistance via a BMP4/HH signaling loop. Oncotarget. PMID 26755648 DOI: 10.18632/Oncotarget.6870  0.368
2016 Lorberbaum DS, Ramos AI, Peterson KA, Carpenter BS, Parker DS, De S, Hillers LE, Blake VM, Nishi Y, McFarlane MR, Chiang AC, Kassis JA, Allen BL, McMahon AP, Barolo S. Author response: An ancient yet flexible cis-regulatory architecture allows localized Hedgehog tuning by patched/Ptch1 Elife. DOI: 10.7554/Elife.13550.030  0.731
2016 Coffman LG, Choi Y, Mclean K, Magliano MPd, Allen B, Buckanovich RJ. Abstract B60: Identification of an ovarian tumor:stromal HH:BMP4 signaling loop critical to ovarian cancer growth and chemotherapy resistance. Clinical Cancer Research. 22. DOI: 10.1158/1557-3265.Ovca15-B60  0.36
2016 Fuchs E, Allen BL, Derynck R. Webinar   Key signaling pathways in cancer: Links to developmental biology Science. 352: 1128-1128. DOI: 10.1126/Science.352.6289.1128-B  0.361
2015 Gurdziel K, Lorberbaum DS, Udager AM, Song JY, Richards N, Parker DS, Johnson LA, Allen BL, Barolo S, Gumucio DL. Identification and Validation of Novel Hedgehog-Responsive Enhancers Predicted by Computational Analysis of Ci/Gli Binding Site Density. Plos One. 10: e0145225. PMID 26710299 DOI: 10.1371/Journal.Pone.0145225  0.384
2015 Joiner AM, Green WW, McIntyre JC, Allen BL, Schwob JE, Martens JR. Primary Cilia on Horizontal Basal Cells Regulate Regeneration of the Olfactory Epithelium. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 13761-72. PMID 26446227 DOI: 10.1523/Jneurosci.1708-15.2015  0.75
2015 Holtz AM, Griffiths SC, Davis SJ, Bishop B, Siebold C, Allen BL. Secreted HHIP1 interacts with heparan sulfate and regulates Hedgehog ligand localization and function. The Journal of Cell Biology. 209: 739-58. PMID 26056142 DOI: 10.1083/Jcb.201411024  0.814
2015 Song JY, Holtz AM, Pinskey JM, Allen BL. Distinct structural requirements for CDON and BOC in the promotion of Hedgehog signaling. Developmental Biology. 402: 239-52. PMID 25848697 DOI: 10.1016/J.Ydbio.2015.03.015  0.814
2015 Carpenter BS, Barry RL, Verhey KJ, Allen BL. The heterotrimeric kinesin-2 complex interacts with and regulates GLI protein function. Journal of Cell Science. 128: 1034-50. PMID 25588831 DOI: 10.1242/Jcs.162552  0.777
2015 Kumari A, Ermilov AN, Allen BL, Bradley RM, Dlugosz AA, Mistretta CM. Hedgehog pathway blockade with the cancer drug LDE225 disrupts taste organs and taste sensation. Journal of Neurophysiology. 113: 1034-40. PMID 25392175 DOI: 10.1152/Jn.00822.2014  0.505
2015 Mathew E, Zhang Y, Holtz AM, Kane KT, Song J, Allen BL, Magliano MPd. Abstract A51: Novel Hedgehog co-receptors in pancreatic cancer Cancer Research. 75. DOI: 10.1158/1538-7445.Panca2014-A51  0.801
2014 Mathew E, Zhang Y, Holtz AM, Kane KT, Song JY, Allen BL, Pasca di Magliano M. Dosage-dependent regulation of pancreatic cancer growth and angiogenesis by hedgehog signaling. Cell Reports. 9: 484-94. PMID 25310976 DOI: 10.1016/J.Celrep.2014.09.010  0.776
2014 Camp D, Haitian He B, Li S, Althaus IW, Holtz AM, Allen BL, Charron F, van Meyel DJ. Ihog and Boi elicit Hh signaling via Ptc but do not aid Ptc in sequestering the Hh ligand. Development (Cambridge, England). 141: 3879-88. PMID 25231763 DOI: 10.1242/Dev.103564  0.809
2014 Mathew E, Collins MA, Fernandez-Barrena MG, Holtz AM, Yan W, Hogan JO, Tata Z, Allen BL, Fernandez-Zapico ME, di Magliano MP. The transcription factor GLI1 modulates the inflammatory response during pancreatic tissue remodeling. The Journal of Biological Chemistry. 289: 27727-43. PMID 25104358 DOI: 10.1074/Jbc.M114.556563  0.776
2013 Holtz AM, Peterson KA, Nishi Y, Morin S, Song JY, Charron F, McMahon AP, Allen BL. Essential role for ligand-dependent feedback antagonism of vertebrate hedgehog signaling by PTCH1, PTCH2 and HHIP1 during neural patterning. Development (Cambridge, England). 140: 3423-34. PMID 23900540 DOI: 10.1242/Dev.095083  0.812
2013 Mathew E, Allen BL, Magliano MPd. Abstract PR10: Novel hedgehog co-receptors in pancreatic cancer progression Cancer Research. 73. DOI: 10.1158/1538-7445.Fbcr13-Pr10  0.504
2011 Izzi L, Lévesque M, Morin S, Laniel D, Wilkes BC, Mille F, Krauss RS, McMahon AP, Allen BL, Charron F. Boc and Gas1 each form distinct Shh receptor complexes with Ptch1 and are required for Shh-mediated cell proliferation. Developmental Cell. 20: 788-801. PMID 21664577 DOI: 10.1016/J.Devcel.2011.04.017  0.663
2011 Allen BL, Song JY, Izzi L, Althaus IW, Kang JS, Charron F, Krauss RS, McMahon AP. Overlapping roles and collective requirement for the coreceptors GAS1, CDO, and BOC in SHH pathway function. Developmental Cell. 20: 775-87. PMID 21664576 DOI: 10.1016/J.Devcel.2011.04.018  0.671
2008 Chamberlain CE, Jeong J, Guo C, Allen BL, McMahon AP. Notochord-derived Shh concentrates in close association with the apically positioned basal body in neural target cells and forms a dynamic gradient during neural patterning. Development (Cambridge, England). 135: 1097-106. PMID 18272593 DOI: 10.1242/Dev.013086  0.714
2007 Allen BL, Tenzen T, McMahon AP. The Hedgehog-binding proteins Gas1 and Cdo cooperate to positively regulate Shh signaling during mouse development. Genes & Development. 21: 1244-57. PMID 17504941 DOI: 10.1101/Gad.1543607  0.688
2007 Wang Y, McMahon AP, Allen BL. Shifting paradigms in Hedgehog signaling. Current Opinion in Cell Biology. 19: 159-65. PMID 17303409 DOI: 10.1016/J.Ceb.2007.02.005  0.648
2006 Tenzen T, Allen BL, Cole F, Kang JS, Krauss RS, McMahon AP. The cell surface membrane proteins Cdo and Boc are components and targets of the Hedgehog signaling pathway and feedback network in mice. Developmental Cell. 10: 647-56. PMID 16647304 DOI: 10.1016/J.Devcel.2006.04.004  0.663
2004 Jasuja R, Allen BL, Pappano WN, Rapraeger AC, Greenspan DS. Cell-surface heparan sulfate proteoglycans potentiate chordin antagonism of bone morphogenetic protein signaling and are necessary for cellular uptake of chordin. The Journal of Biological Chemistry. 279: 51289-97. PMID 15381701 DOI: 10.1074/Jbc.M408129200  0.733
2004 Griffith BR, Allen BL, Rapraeger AC, Kiessling LL. A polymer scaffold for protein oligomerization. Journal of the American Chemical Society. 126: 1608-9. PMID 14871072 DOI: 10.1021/Ja037646M  0.601
2003 Allen BL, Rapraeger AC. Spatial and temporal expression of heparan sulfate in mouse development regulates FGF and FGF receptor assembly. The Journal of Cell Biology. 163: 637-48. PMID 14610064 DOI: 10.1083/Jcb.200307053  0.699
2003 Motamed K, Blake DJ, Angello JC, Allen BL, Rapraeger AC, Hauschka SD, Sage EH. Fibroblast growth factor receptor-1 mediates the inhibition of endothelial cell proliferation and the promotion of skeletal myoblast differentiation by SPARC: a role for protein kinase A. Journal of Cellular Biochemistry. 90: 408-23. PMID 14505356 DOI: 10.1002/Jcb.10645  0.692
2001 Allen BL, Filla MS, Rapraeger AC. Role of heparan sulfate as a tissue-specific regulator of FGF-4 and FGF receptor recognition. The Journal of Cell Biology. 155: 845-58. PMID 11724824 DOI: 10.1083/Jcb.200106075  0.697
Low-probability matches (unlikely to be authored by this person)
2019 Oh YS, Wang EJ, Gailey CD, Brautigan DL, Allen BL, Fu Z. Ciliopathy-Associated Protein Kinase ICK Requires Its Non-Catalytic Carboxyl-Terminal Domain for Regulation of Ciliogenesis. Cells. 8. PMID 31277411 DOI: 10.3390/Cells8070677  0.3
2019 Steele N, Kemp S, Irizarry-Negron V, Sirihorachai V, Abbas A, Carpenter E, Halbrook C, Espinoza C, Lyssiotis C, Crawford H, Frankel T, Bednar F, Allen B, Magliano MPd. Abstract A52: Modulation of Hedgehog signaling alters immune infiltration in pancreatic cancer Cancer Research. 79. DOI: 10.1158/1538-7445.Panca19-A52  0.291
2022 Mohamad Zaki NH, Shiota J, Calder AN, Keeley TM, Allen BL, Nakao K, Samuelson LC, Razumilava N. C-X-C motif chemokine ligand 1 induced by Hedgehog signaling promotes mouse extrahepatic bile duct repair after acute injury. Hepatology (Baltimore, Md.). PMID 35388502 DOI: 10.1002/hep.32492  0.288
2019 Steele N, Irizarry-Negron V, Sirihorachai V, Kemp S, Carpenter E, Halbrook C, Lyssiotis C, Bednar F, Frankel T, Allen B, Pasca di Magliano M. 3373 Modulation of Hedgehog Signaling Alters Immune Infiltration in Pancreatic Cancer Journal of Clinical and Translational Science. 3: 16-16. DOI: 10.1017/cts.2019.40  0.28
2019 Razumilava N, Shiota J, Mohamad Zaki NH, Ocadiz-Ruiz R, Cieslak CM, Zakharia K, Allen BL, Gores GJ, Samuelson LC, Merchant JL. Hedgehog Signaling Modulates Interleukin-33-Dependent Extrahepatic Bile Duct Cell Proliferation in Mice. Hepatology Communications. 3: 277-292. PMID 30766964 DOI: 10.1002/hep4.1295  0.273
2022 Velez-Delgado A, Donahue KL, Du W, Irizarry-Negron V, Menjivar RE, Lasse Opsahl EL, Steele NG, The S, Lazarus J, Sirihorachai VR, Yan W, Kemp SB, Kerk SA, Bollampally M, Yang S, ... ... Allen BL, et al. Extrinsic KRAS signaling shapes the pancreatic microenvironment through fibroblast reprogramming. Cellular and Molecular Gastroenterology and Hepatology. PMID 35245687 DOI: 10.1016/j.jcmgh.2022.02.016  0.269
2020 Garcia PE, Scales MK, Allen BL, Pasca di Magliano M. Pancreatic Fibroblast Heterogeneity: From Development to Cancer. Cells. 9. PMID 33198201 DOI: 10.3390/cells9112464  0.235
2016 Watson S, Allen B, Grant JA. A Clinical Review of Return-to-Play Considerations After Anterior Shoulder Dislocation. Sports Health. PMID 27255423 DOI: 10.1177/1941738116651956  0.209
2018 Watson S, Allen B, Robbins C, Bedi A, Gagnier JJ, Miller B. Does the Rotator Cuff Tear Pattern Influence Clinical Outcomes After Surgical Repair? Orthopaedic Journal of Sports Medicine. 6: 2325967118763107. PMID 29623283 DOI: 10.1177/2325967118763107  0.198
2016 Allen BL. Spinal Cords Built to Scale Developmental Cell. 37: 108-109. DOI: 10.1016/j.devcel.2016.04.007  0.197
2020 Garcia PE, Adoumie M, Kim EC, Zhang Y, Scales MK, El-Tawil YS, Shaikh AZ, Wen HJ, Bednar F, Allen BL, Wellik DM, Crawford HC, Pasca di Magliano M. Differential contribution of pancreatic fibroblast subsets to the pancreatic cancer stroma. Cellular and Molecular Gastroenterology and Hepatology. PMID 32454112 DOI: 10.1016/J.Jcmgh.2020.05.004  0.196
2022 Allen BL, Quach K, Jones T, Levandowski CB, Ebmeier CC, Rubin JD, Read T, Dowell RD, Schepartz A, Taatjes DJ. Suppression of p53 response by targeting p53-Mediator binding with a stapled peptide. Cell Reports. 39: 110630. PMID 35385747 DOI: 10.1016/j.celrep.2022.110630  0.187
2017 Gagnier JJ, Allen B, Watson S, Robbins CB, Bedi A, Carpenter JE, Miller BS. Do Medical Comorbidities Affect Outcomes in Patients With Rotator Cuff Tears? Orthopaedic Journal of Sports Medicine. 5: 2325967117723834. PMID 28856169 DOI: 10.1177/2325967117723834  0.183
2014 Takao D, Dishinger JF, Kee HL, Pinskey JM, Allen BL, Verhey KJ. An assay for clogging the ciliary pore complex distinguishes mechanisms of cytosolic and membrane protein entry. Current Biology : Cb. 24: 2288-94. PMID 25264252 DOI: 10.1016/J.Cub.2014.08.012  0.182
2015 Allen BL, Taatjes DJ. The Mediator complex: a central integrator of transcription. Nature Reviews. Molecular Cell Biology. 16: 155-66. PMID 25693131 DOI: 10.1038/Nrm3951  0.18
2020 Steele NG, Carpenter ES, Kemp SB, Sirihorachai V, The S, Delrosario L, Lazarus J, Amir ED, Gunchick V, Espinoza C, Bell S, Harris L, Lima F, Irizarry-Negron V, Paglia D, ... ... Allen BL, et al. Multimodal Mapping of the Tumor and Peripheral Blood Immune Landscape in Human Pancreatic Cancer. Nature Cancer. 1: 1097-1112. PMID 34296197 DOI: 10.1038/s43018-020-00121-4  0.157
2013 Dickinson BC, Leconte AM, Allen B, Esvelt KM, Liu DR. Experimental interrogation of the path dependence and stochasticity of protein evolution using phage-assisted continuous evolution Proceedings of the National Academy of Sciences of the United States of America. 110: 9007-9012. PMID 23674678 DOI: 10.1073/Pnas.1220670110  0.156
2013 Reiter JG, Bozic I, Allen B, Chatterjee K, Nowak MA. The effect of one additional driver mutation on tumor progression. Evolutionary Applications. 6: 34-45. PMID 23396615 DOI: 10.1111/Eva.12020  0.153
2020 Sample C, Bieri JA, Allen B, Dementieva Y, Carson A, Higgins C, Piatt S, Qiu S, Stafford S, Mattsson BJ, Semmens DJ, Diffendorfer JE, Thogmartin WE. Quantifying the Contribution of Habitats and Pathways to a Spatially Structured Population Facing Environmental Change. The American Naturalist. 196: 157-168. PMID 32673098 DOI: 10.1086/709009  0.144
2017 Ebmeier CC, Erickson B, Allen BL, Allen MA, Kim H, Fong N, Jacobsen JR, Liang K, Shilatifard A, Dowell RD, Old WM, Bentley DL, Taatjes DJ. Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications. Cell Reports. 20: 1173-1186. PMID 28768201 DOI: 10.1016/J.Celrep.2017.07.021  0.132
2012 Bozic I, Allen B, Nowak MA. Dynamics of targeted cancer therapy. Trends in Molecular Medicine. 18: 311-6. PMID 22595628 DOI: 10.1016/J.Molmed.2012.04.006  0.117
2017 Jung H, Szwejkowski CJ, Pena-Francesch A, Tomko JA, Allen B, Özdemir ŞK, Hopkins P, Demirel MC. Ultrafast laser-probing spectroscopy for studying molecular structure of protein aggregates. The Analyst. PMID 28277574 DOI: 10.1039/C6An02570F  0.116
2013 Leconte AM, Dickinson BC, Yang DD, Chen IA, Allen B, Liu DR. A population-based experimental model for protein evolution: Effects of mutation rate and selection stringency on evolutionary outcomes Biochemistry. 52: 1490-1499. PMID 23360105 DOI: 10.1021/Bi3016185  0.115
2013 Allen B, Nowak MA, Dieckmann U. Adaptive dynamics with interaction structure. The American Naturalist. 181: E139-63. PMID 23669549 DOI: 10.1086/670192  0.115
2017 Makohon-Moore AP, Zhang M, Reiter JG, Bozic I, Allen B, Kundu D, Chatterjee K, Wong F, Jiao Y, Kohutek ZA, Hong J, Attiyeh M, Javier B, Wood LD, Hruban RH, et al. Limited heterogeneity of known driver gene mutations among the metastases of individual patients with pancreatic cancer. Nature Genetics. PMID 28092682 DOI: 10.1038/Ng.3764  0.115
2016 Lerner E, Chung S, Allen BL, Wang S, Lee J, Lu SW, Grimaud LW, Ingargiola A, Michalet X, Alhadid Y, Borukhov S, Strick TR, Taatjes DJ, Weiss S. Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. PMID 27729537 DOI: 10.1073/Pnas.1605038113  0.114
2022 Su Q, Allen B, Plotkin JB. Evolution of cooperation with asymmetric social interactions. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34983850 DOI: 10.1073/pnas.2113468118  0.105
2013 Allen BL, Allen LR, Engeman RM, Leung LK. Intraguild relationships between sympatric predators exposed to lethal control: predator manipulation experiments. Frontiers in Zoology. 10: 39. PMID 23842144 DOI: 10.1186/1742-9994-10-39  0.101
2020 Allen BL, Montague-Cardoso K, Simeoli R, Colas RA, Oggero S, Vilar B, McNaughton PA, Dalli J, Perretti M, Sher E, Malcangio M. Imbalance of pro-resolving lipid mediators in persistent allodynia dissociated from signs of clinical arthritis. Pain. PMID 32379221 DOI: 10.1097/J.Pain.0000000000001908  0.097
2014 Allen BL, Engeman RM, Leung LK. The short-term effects of a routine poisoning campaign on the movements and detectability of a social top-predator. Environmental Science and Pollution Research International. 21: 2178-90. PMID 24043505 DOI: 10.1007/s11356-013-2118-7  0.097
2013 Bozic I, Reiter JG, Allen B, Antal T, Chatterjee K, Shah P, Moon YS, Yaqubie A, Kelly N, Le DT, Lipson EJ, Chapman PB, Diaz LA, Vogelstein B, Nowak MA. Evolutionary dynamics of cancer in response to targeted combination therapy. Elife. 2: e00747. PMID 23805382 DOI: 10.7554/Elife.00747  0.096
2012 Diaz LA, Williams RT, Wu J, Kinde I, Hecht JR, Berlin J, Allen B, Bozic I, Reiter JG, Nowak MA, Kinzler KW, Oliner KS, Vogelstein B. The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature. 486: 537-40. PMID 22722843 DOI: 10.1038/Nature11219  0.094
2020 Steele NG, Carpenter ES, Kemp SB, Sirihorachai VR, The S, Delrosario L, Lazarus J, Amir ED, Gunchick V, Espinoza C, Bell S, Harris L, Lima F, Irizarry-Negron V, Paglia D, ... ... Allen BL, et al. Multimodal mapping of the tumor and peripheral blood immune landscape in human pancreatic cancer Nature Cancer. 1: 1097-1112. DOI: 10.1038/s43018-020-00121-4  0.093
2018 Fotouhi B, Momeni N, Allen B, Nowak MA. Conjoining uncooperative societies facilitates evolution of cooperation. Nature Human Behaviour. 2: 492-499. PMID 31097804 DOI: 10.1038/s41562-018-0368-6  0.093
2021 Bobier C, Allen B. The virtue of compassion in compassionate conservation. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 34057247 DOI: 10.1111/cobi.13776  0.092
2015 Allen BL. Top-predator control-induced trophic cascades: an alternative hypothesis to the conclusion of Colman et al. Proceedings. Biological Sciences / the Royal Society. 282: 20141251. PMID 25473006 DOI: 10.1098/rspb.2014.1251  0.09
2023 Nguyen V, Weaver-Romero AL, Wang X, Tavares Y, Bauer A, McDowell RC, Dorsainvil C, Eason MD, Malcolm AN, Raz CD, Byrd BD, Riegel C, Clark M, Ber J, Harrison RL, ... ... Allen B, et al. SURVEY OF INVASIVE MOSQUITO SURVEILLANCE AND CONTROL CAPACITY IN SOUTHEASTERN USA REVEALS TRAINING AND RESOURCE NEEDS. Journal of the American Mosquito Control Association. PMID 36972520 DOI: 10.2987/22-7107  0.089
2019 Hayward MW, Callen A, Allen BL, Ballard G, Broekhuis F, Bugir C, Clarke RH, Clulow J, Clulow S, Daltry JC, Davies-Mostert HT, Fleming PJS, Griffin AS, Howell LG, Kerley GIH, et al. Should the Compassionate Tail Wag the Conservation Dog? Conservation Biology : the Journal of the Society For Conservation Biology. PMID 31206825 DOI: 10.1111/Cobi.13366  0.088
2023 Graniel JV, Teitel J, Glineburg MR, Cohen E, Buttitta LA, Barolo S, Allen BL. Developing Future Biologists: developmental biology for undergraduates from underserved communities. Development (Cambridge, England). 150. PMID 36645371 DOI: 10.1242/dev.201337  0.087
2015 Allen B, Sample C, Dementieva Y, Medeiros RC, Paoletti C, Nowak MA. The molecular clock of neutral evolution can be accelerated or slowed by asymmetric spatial structure. Plos Computational Biology. 11: e1004108. PMID 25719560 DOI: 10.1371/journal.pcbi.1004108  0.086
2015 Olejarz JW, Allen B, Veller C, Nowak MA. The evolution of non-reproductive workers in insect colonies with haplodiploid genetics. Elife. 4. PMID 26485033 DOI: 10.7554/eLife.08918  0.086
2021 Castle G, Smith D, Allen LR, Allen BL. Terrestrial mesopredators did not increase after top-predator removal in a large-scale experimental test of mesopredator release theory. Scientific Reports. 11: 18205. PMID 34521924 DOI: 10.1038/s41598-021-97634-4  0.084
2023 Cabral de Mel SJ, Seneweera S, Dangolla A, Weerakoon DK, Maraseni T, Allen BL. Attitudes towards the Potential Use of Aversive Geofencing Devices to Manage Wild Elephant Movement. Animals : An Open Access Journal From Mdpi. 13. PMID 37627448 DOI: 10.3390/ani13162657  0.084
2016 Cooney D, Allen B, Veller C. Assortment and the evolution of cooperation in a Moran process with exponential fitness. Journal of Theoretical Biology. PMID 27544416 DOI: 10.1016/j.jtbi.2016.08.026  0.083
2015 Allen B, Nowak MA. Games among relatives revisited. Journal of Theoretical Biology. 378: 103-16. PMID 25953388 DOI: 10.1016/j.jtbi.2015.04.031  0.083
2013 Allen B, Nowak MA. Cooperation and the fate of microbial societies. Plos Biology. 11: e1001549. PMID 23637573 DOI: 10.1371/journal.pbio.1001549  0.08
2017 Allen BL, Fawcett A, Anker A, Engeman RM, Lisle A, Leung LK. Environmental effects are stronger than human effects on mammalian predator-prey relationships in arid Australian ecosystems. The Science of the Total Environment. 610: 451-461. PMID 28818660 DOI: 10.1016/j.scitotenv.2017.08.051  0.08
2022 Bobier CA, Allen BL. Compassionate Conservation is indistinguishable from traditional forms of conservation in practice. Frontiers in Psychology. 13: 750313. PMID 36262450 DOI: 10.3389/fpsyg.2022.750313  0.079
2016 Harrity JP, Allen B, Connolly M. A Pd-Catalyzed Synthesis of Functionalized Piperidines. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27273202 DOI: 10.1002/Chem.201602586  0.075
2016 Kaluza J, Donald RL, Gynther IC, Leung LK, Allen BL. The Distribution and Density of Water Mice (Xeromys myoides) in the Maroochy River of Southeast Queensland, Australia. Plos One. 11: e0146133. PMID 26789521 DOI: 10.1371/journal.pone.0146133  0.074
2013 Allen B, Gore J, Nowak MA. Spatial dilemmas of diffusible public goods. Elife. 2: e01169. PMID 24347543 DOI: 10.7554/Elife.01169  0.074
2019 Allen BL. Para-aminopropiophenone (PAPP) in canid pest ejectors (CPEs) kills wild dogs and European red foxes quickly and humanely. Environmental Science and Pollution Research International. PMID 30875074 DOI: 10.1007/s11356-019-04818-7  0.072
2021 Kondapaneni R, Malcolm AN, Vazquez BM, Zeng E, Chen TY, Kosinski KJ, Romero-Weaver AL, Giordano BV, Allen B, Riles MT, Killingsworth D, Campbell LP, Caragata EP, Lee Y. Mosquito Control Priorities in Florida-Survey Results from Florida Mosquito Control Districts. Pathogens (Basel, Switzerland). 10. PMID 34451411 DOI: 10.3390/pathogens10080947  0.07
2023 Behrendorff L, King R, Allen BL. Efficacy of Management Efforts to Reduce Food-Related Dingo-Human Interactions and Conflict on K'gari (Fraser Island), Australia. Animals : An Open Access Journal From Mdpi. 13. PMID 36670744 DOI: 10.3390/ani13020204  0.069
2012 Allen B, Nowak MA. Evolutionary shift dynamics on a cycle. Journal of Theoretical Biology. 311: 28-39. PMID 22814475 DOI: 10.1016/j.jtbi.2012.07.006  0.068
2020 Smith D, King R, Allen BL. Impacts of exclusion fencing on target and non-target fauna: a global review. Biological Reviews of the Cambridge Philosophical Society. PMID 32725786 DOI: 10.1111/brv.12631  0.068
2017 Allen B, Drake M, Harris N, Sullivan T. Using KBase to Assemble and Annotate Prokaryotic Genomes. Current Protocols in Microbiology. 46: 1E.13.1-1E.13.18. PMID 28800158 DOI: 10.1002/Cpmc.37  0.067
2016 Allen BL, Carmelito E, Amos M, Goullet MS, Allen LR, Speed J, Gentle M, Leung LK. Diet of dingoes and other wild dogs in peri-urban areas of north-eastern Australia. Scientific Reports. 6: 23028. PMID 26964762 DOI: 10.1038/srep23028  0.065
2022 Cabral de Mel SJ, Seneweera S, de Mel RK, Dangolla A, Weerakoon DK, Maraseni T, Allen BL. Current and Future Approaches to Mitigate Conflict between Humans and Asian Elephants: The Potential Use of Aversive Geofencing Devices. Animals : An Open Access Journal From Mdpi. 12. PMID 36359089 DOI: 10.3390/ani12212965  0.064
2022 Pant G, Maraseni T, Apan A, Allen BL. Identifying and prioritising climate change adaptation actions for greater one-horned rhinoceros () conservation in Nepal. Peerj. 10: e12795. PMID 35047240 DOI: 10.7717/peerj.12795  0.064
2020 Pant G, Maraseni T, Apan A, Allen BL. Trends and current state of research on greater one-horned rhinoceros (Rhinoceros unicornis): A systematic review of the literature over a period of 33 years (1985-2018). The Science of the Total Environment. 710: 136349. PMID 32050371 DOI: 10.1016/j.scitotenv.2019.136349  0.064
2014 Allen B, Tarnita CE. Measures of success in a class of evolutionary models with fixed population size and structure. Journal of Mathematical Biology. 68: 109-43. PMID 23179131 DOI: 10.1007/S00285-012-0622-X  0.063
2015 Nowak MA, Allen B. Inclusive fitness theorizing invokes phenomena that are not relevant for the evolution of eusociality. Plos Biology. 13: e1002134. PMID 25909914 DOI: 10.1371/journal.pbio.1002134  0.063
2014 Allen BL, Leung LK. The (non)effects of lethal population control on the diet of Australian dingoes. Plos One. 9: e108251. PMID 25243466 DOI: 10.1371/journal.pone.0108251  0.063
2019 Fotouhi B, Momeni N, Allen B, Nowak MA. Evolution of cooperation on large networks with community structure. Journal of the Royal Society, Interface. 16: 20180677. PMID 30862280 DOI: 10.1098/rsif.2018.0677  0.062
2016 Behrendorff L, Leung LK, McKinnon A, Hanger J, Belonje G, Tapply J, Jones D, Allen BL. Insects for breakfast and whales for dinner: the diet and body condition of dingoes on Fraser Island (K'gari). Scientific Reports. 6: 23469. PMID 27009879 DOI: 10.1038/srep23469  0.061
2020 McAvoy A, Allen B, Nowak MA. Social goods dilemmas in heterogeneous societies. Nature Human Behaviour. PMID 32451481 DOI: 10.1038/s41562-020-0881-2  0.06
2020 Allen BL, Hampton JO. Minimizing animal welfare harms associated with predation management in agro-ecosystems. Biological Reviews of the Cambridge Philosophical Society. PMID 32302055 DOI: 10.1111/brv.12601  0.06
2021 Allen B, Sample C, Steinhagen P, Shapiro J, King M, Hedspeth T, Goncalves M. Fixation probabilities in graph-structured populations under weak selection. Plos Computational Biology. 17: e1008695. PMID 33529219 DOI: 10.1371/journal.pcbi.1008695  0.059
2018 Maharjan R, Mukhopadhyay S, Allen B, Storz T, Brown E. Constitutive relation for the system-spanning dynamically jammed region in response to impact of cornstarch and water suspensions. Physical Review. E. 97: 052602. PMID 29906932 DOI: 10.1103/Physreve.97.052602  0.059
2021 Hampton JO, Hyndman TH, Allen BL, Fischer B. Animal Harms and Food Production: Informing Ethical Choices. Animals : An Open Access Journal From Mdpi. 11. PMID 33922738 DOI: 10.3390/ani11051225  0.058
2017 Allen B, Lippner G, Chen YT, Fotouhi B, Momeni N, Yau ST, Nowak MA. Evolutionary dynamics on any population structure. Nature. PMID 28355181 DOI: 10.1038/Nature21723  0.057
2018 Allen B, McAvoy A. A mathematical formalism for natural selection with arbitrary spatial and genetic structure. Journal of Mathematical Biology. PMID 30430219 DOI: 10.1007/s00285-018-1305-z  0.057
2009 Allen B, Kon M, Bar-Yam Y. A new phylogenetic diversity measure generalizing the shannon index and its application to phyllostomid bats. The American Naturalist. 174: 236-43. PMID 19548837 DOI: 10.1086/600101  0.057
2013 Allen B, Nowak MA, Wilson EO. Limitations of inclusive fitness. Proceedings of the National Academy of Sciences of the United States of America. 110: 20135-9. PMID 24277847 DOI: 10.1073/pnas.1317588110  0.057
2018 Allen B, Sokol B, Mukhopadhyay S, Maharjan R, Brown E. System-spanning dynamically jammed region in response to impact of cornstarch and water suspensions. Physical Review. E. 97: 052603. PMID 29906931 DOI: 10.1103/Physreve.97.052603  0.056
2019 Allen B, Kudrolli A. Effective drag of a rod in fluid-saturated granular beds. Physical Review. E. 100: 022901. PMID 31574639 DOI: 10.1103/Physreve.100.022901  0.055
2012 Allen B, Traulsen A, Tarnita CE, Nowak MA. How mutation affects evolutionary games on graphs. Journal of Theoretical Biology. 299: 97-105. PMID 21473871 DOI: 10.1016/J.Jtbi.2011.03.034  0.055
2017 Gentle M, Speed J, Allen BL, Harris S, Haapakoski H, Bell K. The longevity of para-aminopropiophenone (PAPP) wild dog baits and the implications for effective and safe baiting campaigns. Environmental Science and Pollution Research International. PMID 28357798 DOI: 10.1007/s11356-017-8668-3  0.055
2023 Allen BL, Bobier C, Dawson S, Fleming PJS, Hampton J, Jachowski D, Kerley GIH, Linnell JDC, Marnewick K, Minnie L, Muthersbaugh M, O'Riain MJ, Parker D, Proulx G, Somers MJ, et al. Why humans kill animals and why we cannot avoid it. The Science of the Total Environment. 165283. PMID 37406694 DOI: 10.1016/j.scitotenv.2023.165283  0.055
2013 Adler NR, Biddle M, Beswick L, Hair C, Allen B, Graves S, Islam A, Watson JP. Hepatitis C virus heterogeneity: lipoprotein and immunoglobulin binding and clinical status. Journal of Clinical and Experimental Hepatology. 3: 362-3. PMID 25755527 DOI: 10.1016/j.jceh.2013.08.010  0.052
2016 Olejarz JW, Allen B, Veller C, Gadagkar R, Nowak MA. Evolution of worker policing. Journal of Theoretical Biology. PMID 26976051 DOI: 10.1016/J.Jtbi.2016.03.001  0.052
2014 Jeong HC, Oh SY, Allen B, Nowak MA. Optional games on cycles and complete graphs. Journal of Theoretical Biology. 356: 98-112. PMID 24780293 DOI: 10.1016/j.jtbi.2014.04.025  0.051
2020 Smith D, Waddell K, Allen BL. Expansion of Vertebrate Pest Exclusion Fencing and Its Potential Benefits for Threatened Fauna Recovery in Australia. Animals : An Open Access Journal From Mdpi. 10. PMID 32883031 DOI: 10.3390/ani10091550  0.05
2016 McNeill AT, Leung LK, Goullet MS, Gentle MN, Allen BL. Dingoes at the Doorstep: Home Range Sizes and Activity Patterns of Dingoes and Other Wild Dogs around Urban Areas of North-Eastern Australia. Animals : An Open Access Journal From Mdpi. 6. PMID 27537916 DOI: 10.3390/ani6080048  0.049
2012 Allen BL, Leung LK. Assessing predation risk to threatened fauna from their prevalence in predator scats: dingoes and rodents in arid Australia. Plos One. 7: e36426. PMID 22563498 DOI: 10.1371/journal.pone.0036426  0.049
2012 Allen B, Rosenbloom DI. Mutation rate evolution in replicator dynamics. Bulletin of Mathematical Biology. 74: 2650-75. PMID 22941151 DOI: 10.1007/s11538-012-9771-8  0.048
2017 Harrity JPA, Allen B, Lakeland C. Utilizing Palladium-Stabilized Zwitterions for the Construction of N-Heterocycles. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 28685875 DOI: 10.1002/Chem.201702486  0.047
2017 Sample C, Allen B. The limits of weak selection and large population size in evolutionary game theory. Journal of Mathematical Biology. PMID 28352964 DOI: 10.1007/s00285-017-1119-4  0.046
2014 Szabó G, Bodó KS, Allen B, Nowak MA. Fourier decomposition of payoff matrix for symmetric three-strategy games. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 042811. PMID 25375553 DOI: 10.1103/PhysRevE.90.042811  0.046
2015 Vukov J, Varga L, Allen B, Nowak MA, Szabó G. Payoff components and their effects in a spatial three-strategy evolutionary social dilemma. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 012813. PMID 26274231 DOI: 10.1103/PhysRevE.92.012813  0.042
2023 Behrendorff L, King R, Allen BL. Trouble in paradise: When two species of conservation and cultural value clash, causing a management conundrum. Ecology and Evolution. 13: e10726. PMID 38020708 DOI: 10.1002/ece3.10726  0.042
2023 Allen B. Symmetry in models of natural selection. Journal of the Royal Society, Interface. 20: 20230306. PMID 37963562 DOI: 10.1098/rsif.2023.0306  0.041
2017 Rhee T, Petikam L, Allen B, Chalmers A. MR360: Mixed Reality Rendering for 360 (°) Panoramic Videos. Ieee Transactions On Visualization and Computer Graphics. PMID 28129172 DOI: 10.1109/Tvcg.2017.2657178  0.04
2016 Veelen MV, Allen B, Hoffman M, Simon B, Veller C. Hamilton's rule. Journal of Theoretical Biology. PMID 27569292 DOI: 10.1016/J.Jtbi.2016.08.019  0.039
2018 Mukhopadhyay S, Allen B, Brown E. Testing constitutive relations by running and walking on cornstarch and water suspensions. Physical Review. E. 97: 052604. PMID 29906894 DOI: 10.1103/Physreve.97.052604  0.039
2015 Szabó G, Bodó KS, Allen B, Nowak MA. Four classes of interactions for evolutionary games. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 022820. PMID 26382467 DOI: 10.1103/PhysRevE.92.022820  0.038
2021 Pant G, Maraseni T, Apan A, Allen BL. Predicted declines in suitable habitat for greater one-horned rhinoceros () under future climate and land use change scenarios. Ecology and Evolution. 11: 18288-18304. PMID 35003673 DOI: 10.1002/ece3.8421  0.036
2014 Rosenbloom DI, Allen B. Frequency-dependent selection can lead to evolution of high mutation rates. The American Naturalist. 183: E131-53. PMID 24739203 DOI: 10.1086/675505  0.035
2013 Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, ... ... Allen B, et al. The COMBREX project: design, methodology, and initial results. Plos Biology. 11: e1001638. PMID 24013487 DOI: 10.1371/Journal.Pbio.1001638  0.034
2023 De Souza S, Kahol de Jong J, Perone Y, Shetty S, Qurashi M, Vithayathil M, Shah T, Ross P, Temperley L, Yip VS, Banerjee A, Bettinger D, Sturm L, Reeves HL, Geh D, ... ... Allen B, et al. Impact of COVID-19 on 1-Year Survival Outcomes in Hepatocellular Carcinoma: A Multicenter Cohort Study. Cancers. 15. PMID 37444488 DOI: 10.3390/cancers15133378  0.033
2017 O'Connor JM, Limpus CJ, Hofmeister KM, Allen BL, Burnett SE. Anti-predator meshing may provide greater protection for sea turtle nests than predator removal. Plos One. 12: e0171831. PMID 28187181 DOI: 10.1371/journal.pone.0171831  0.032
2021 McAvoy A, Allen B. Fixation probabilities in evolutionary dynamics under weak selection. Journal of Mathematical Biology. 82: 14. PMID 33534054 DOI: 10.1007/s00285-021-01568-4  0.025
2017 Nowak MA, McAvoy A, Allen B, Wilson EO. The general form of Hamilton's rule makes no predictions and cannot be tested empirically. Proceedings of the National Academy of Sciences of the United States of America. PMID 28512224 DOI: 10.1073/pnas.1701805114  0.024
2019 Allen B, Lippner G, Nowak MA. Evolutionary games on isothermal graphs. Nature Communications. 10: 5107. PMID 31704922 DOI: 10.1038/s41467-019-13006-7  0.022
2002 Davids JR, Benfanti P, Blackhurst DW, Allen BL. Assessment of femoral anteversion in children with cerebral palsy: accuracy of the trochanteric prominence angle test. Journal of Pediatric Orthopedics. 22: 173-8. PMID 11856924 DOI: 10.1097/00004694-200203000-00007  0.019
2020 Allen B, Sample C, Jencks R, Withers J, Steinhagen P, Brizuela L, Kolodny J, Parke D, Lippner G, Dementieva YA. Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs. Plos Computational Biology. 16: e1007529. PMID 31951612 DOI: 10.1371/journal.pcbi.1007529  0.017
2004 Stasikelis PJ, Allen BL. Osteonecrosis after proximal femoral osteotomy in spastic encephalopathy. Orthopedics. 27: 330-2. PMID 15058458  0.017
2024 Allen B. Flipping the intuition for games on dynamic networks. Nature Computational Science. 3: 737-738. PMID 38177776 DOI: 10.1038/s43588-023-00513-3  0.01
2014 Schoch B, Allen B, Mileti J, Sperling JW, Cofield RH. Shoulder arthroplasty for the treatment of postinfectious glenohumeral arthritis. Journal of Shoulder and Elbow Surgery / American Shoulder and Elbow Surgeons ... [Et Al.]. 23: 1327-33. PMID 24618194 DOI: 10.1016/j.jse.2013.12.011  0.01
2014 Allen B, Schoch B, Sperling JW, Cofield RH. Shoulder arthroplasty for osteoarthritis secondary to glenoid dysplasia: an update. Journal of Shoulder and Elbow Surgery / American Shoulder and Elbow Surgeons ... [Et Al.]. 23: 214-20. PMID 23937928 DOI: 10.1016/j.jse.2013.05.012  0.01
2012 Phan CM, Allen B, Peters LB, Le TN, Tade MO. Can water float on oil? Langmuir : the Acs Journal of Surfaces and Colloids. 28: 4609-13. PMID 22352678 DOI: 10.1021/la204820a  0.01
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