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Bin Zhang - Publications

Affiliations: 
2016- Department of Chemistry Massachusetts Institute of Technology, Cambridge, MA, United States 
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Li Z, Ma R, Ma S, Tian L, Lu T, Zhang J, Mundy-Bosse BL, Zhang B, Marcucci G, Caligiuri MA, Yu J. ILC1s control leukemia stem cell fate and limit development of AML. Nature Immunology. PMID 35487987 DOI: 10.1038/s41590-022-01198-y  0.316
2020 Leicher R, Ge EJ, Lin X, Reynolds MJ, Xie W, Walz T, Zhang B, Muir TW, Liu S. Single-molecule and in silico dissection of the interaction between Polycomb repressive complex 2 and chromatin. Proceedings of the National Academy of Sciences of the United States of America. PMID 33208532 DOI: 10.1073/pnas.2003395117  0.57
2020 Kilgore H, Latham AP, Ressler VT, Zhang B, Raines RT. Structure and Dynamics of -Glycosylated Human Ribonuclease 1. Biochemistry. PMID 32544330 DOI: 10.1021/Acs.Biochem.0C00191  0.305
2020 Xie W, Qi Y, Zhang B. Chromatin Folding Coordinate and Landscape Unraveled by Deep Learning Analysis of Single-Cell Imaging Data Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.3000  0.533
2019 Latham AP, Zhang B. Maximum Entropy Optimized Force Field for Intrinsically Disordered Proteins. Journal of Chemical Theory and Computation. PMID 31756104 DOI: 10.1021/Acs.Jctc.9B00932  0.314
2019 Rosa-Raíces JL, Zhang B, Miller TF. Path-accelerated stochastic molecular dynamics: Parallel-in-time integration using path integrals. The Journal of Chemical Physics. 151: 164120. PMID 31675892 DOI: 10.1063/1.5125455  0.582
2019 Qi Y, Zhang B. Predicting three-dimensional genome organization with chromatin states. Plos Computational Biology. 15: e1007024. PMID 31181064 DOI: 10.1371/Journal.Pcbi.1007024  0.328
2019 Parsons T, Zhang B. Critical role of histone tail entropy in nucleosome unwinding. The Journal of Chemical Physics. 150: 185103. PMID 31091895 DOI: 10.1063/1.5085663  0.333
2019 Xie WJ, Zhang B. Learning the Formation Mechanism of Domain-Level Chromatin States with Epigenomics Data. Biophysical Journal. PMID 31053260 DOI: 10.1016/J.Bpj.2019.04.006  0.312
2019 Latham AP, Zhang B. Improving Coarse-Grained Protein Force Fields with Small-Angle X-Ray Scattering Data. The Journal of Physical Chemistry. B. PMID 30620594 DOI: 10.1021/Acs.Jpcb.8B10336  0.31
2016 Zhang B, Wolynes PG. Genomic Energy Landscapes. Biophysical Journal. PMID 27692923 DOI: 10.1016/J.Bpj.2016.08.046  0.497
2016 Di Pierro M, Zhang B, Aiden EL, Wolynes PG, Onuchic JN. Transferable model for chromosome architecture. Proceedings of the National Academy of Sciences of the United States of America. PMID 27688758 DOI: 10.1073/Pnas.1613607113  0.515
2016 Tsai M, Zhang B, Zheng W, Wolynes PG. The Molecular Mechanism of Facilitated Dissociation of Fis Protein from DNA. Journal of the American Chemical Society. PMID 27685351 DOI: 10.1021/Jacs.6B08416  0.708
2016 Marshall SS, Niesen MJ, Müller A, Tiemann K, Saladi SM, Galimidi RP, Zhang B, Clemons WM, Miller TF. A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency. Cell Reports. PMID 27524616 DOI: 10.1016/J.Celrep.2016.07.042  0.629
2016 Zhang B, Wolynes PG. Shape Transitions and Chiral Symmetry Breaking in the Energy Landscape of the Mitotic Chromosome. Physical Review Letters. 116: 248101. PMID 27367409 DOI: 10.1103/Physrevlett.116.248101  0.49
2016 Zhang B, Zheng W, Papoian GA, Wolynes PG. Exploring the Free Energy Landscape of Nucleosomes. Journal of the American Chemical Society. PMID 27300314 DOI: 10.1021/Jacs.6B02893  0.671
2016 Zang ZJ, Ji SY, Zhang YN, Gao Y, Zhang B. Effects of Saikokaryukotsuboreito on Spermatogenesis and Fertility in Aging Male Mice. Chinese Medical Journal. 129: 846-853. PMID 26996482 DOI: 10.4103/0366-6999.178972  0.312
2016 Van Lehn RC, Zhang B, Miller TF. Determinants of Multispanning Membrane Protein Integration Mediated by the Sec Translocon Biophysical Journal. 110: 56a-57a. DOI: 10.1016/J.Bpj.2015.11.372  0.674
2015 Van Lehn RC, Zhang B, Miller TF. Regulation of multispanning membrane protein topology via post-translational annealing. Elife. 4. PMID 26408961 DOI: 10.7554/Elife.08697  0.676
2015 Zhang B, Wolynes PG. Topology, structures, and energy landscapes of human chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 112: 6062-7. PMID 25918364 DOI: 10.1073/Pnas.1506257112  0.495
2015 Lehn RCV, Zhang B, Miller TF. Author response: Regulation of multispanning membrane protein topology via post-translational annealing Elife. DOI: 10.7554/Elife.08697.024  0.636
2015 Zhang B, Wolynes PG. Prediction of Chromosome Conformations with Maximum Entropy Principle Biophysical Journal. 108: 537a. DOI: 10.1016/J.Bpj.2014.11.2947  0.514
2014 Zhang B, Wolynes PG. Stem cell differentiation as a many-body problem. Proceedings of the National Academy of Sciences of the United States of America. 111: 10185-90. PMID 24946805 DOI: 10.1073/Pnas.1408561111  0.483
2012 Zhang B, Miller TF. Long-timescale dynamics and regulation of Sec-facilitated protein translocation. Cell Reports. 2: 927-37. PMID 23084746 DOI: 10.1016/J.Celrep.2012.08.039  0.676
2012 Zhang B, Miller TF. Direct simulation of early-stage Sec-facilitated protein translocation. Journal of the American Chemical Society. 134: 13700-7. PMID 22852862 DOI: 10.1021/Ja3034526  0.68
2010 Zhang B, Miller TF. Hydrophobically stabilized open state for the lateral gate of the Sec translocon. Proceedings of the National Academy of Sciences of the United States of America. 107: 5399-404. PMID 20203009 DOI: 10.1073/Pnas.0914752107  0.616
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