Jin Billy Li - Publications

Affiliations: 
Genetics Harvard Medical School, Boston, MA, United States 

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhang K, Du M, Zhang H, Zhang X, Cao S, Wang X, Wang W, Guan X, Zhou P, Li J, Jiang W, Tang M, Zheng Q, Cao M, Zhou Y, et al. The haplotype-resolved T2T genome of teinturier cultivar Yan73 reveals the genetic basis of anthocyanin biosynthesis in grapes. Horticulture Research. 10: uhad205. PMID 38046853 DOI: 10.1093/hr/uhad205  0.312
2023 Li J, Cullis C. Comparative analysis of 84 chloroplast genomes of reveals two distinct cytotypes. Frontiers in Plant Science. 13: 1025408. PMID 36798803 DOI: 10.3389/fpls.2022.1025408  0.318
2022 Li Q, Gloudemans MJ, Geisinger JM, Fan B, Aguet F, Sun T, Ramaswami G, Li YI, Ma JB, Pritchard JK, Montgomery SB, Li JB. RNA editing underlies genetic risk of common inflammatory diseases. Nature. PMID 35922514 DOI: 10.1038/s41586-022-05052-x  0.354
2021 Liu X, Sun T, Shcherbina A, Li Q, Jarmoskaite I, Kappel K, Ramaswami G, Das R, Kundaje A, Li JB. Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis. Nature Communications. 12: 2165. PMID 33846332 DOI: 10.1038/s41467-021-22489-2  0.43
2020 Freund EC, Sapiro AL, Li Q, Linder S, Moresco JJ, Yates JR, Li JB. Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing. Cell Reports. 31: 107656. PMID 32433965 DOI: 10.1016/J.Celrep.2020.107656  0.42
2020 Sapiro AL, Freund EC, Restrepo L, Qiao HH, Bhate A, Li Q, Ni JQ, Mosca TJ, Li JB. Zinc Finger RNA-Binding Protein Zn72D Regulates ADAR-Mediated RNA Editing in Neurons. Cell Reports. 31: 107654. PMID 32433963 DOI: 10.1016/J.Celrep.2020.107654  0.422
2020 Deng P, Khan A, Jacobson D, Sambrani N, McGurk L, Li X, Jayasree A, Hejatko J, Shohat-Ophir G, O'Connell MA, Li JB, Keegan LP. Adar RNA editing-dependent and -independent effects are required for brain and innate immune functions in Drosophila. Nature Communications. 11: 1580. PMID 32221286 DOI: 10.1038/S41467-020-15435-1  0.308
2019 Breen MS, Dobbyn A, Li Q, Roussos P, Hoffman GE, Stahl E, Chess A, Sklar P, Li JB, Devlin B, Buxbaum JD. Global landscape and genetic regulation of RNA editing in cortical samples from individuals with schizophrenia. Nature Neuroscience. 22: 1402-1412. PMID 31455887 DOI: 10.1016/J.Euroneuro.2019.07.236  0.421
2019 Wang Y, Wang B, Xie H, Ren Q, Liu X, Li F, Lv X, He X, Cheng C, Deng R, Li J, Zhao J, Song Z, Gu F. Efficient human genome editing using SaCas9 ribonucleoprotein complexes. Biotechnology Journal. e1800689. PMID 30927491 DOI: 10.1002/biot.201800689  0.335
2019 Merkle T, Merz S, Reautschnig P, Blaha A, Li Q, Vogel P, Wettengel J, Li JB, Stafforst T. Precise RNA editing by recruiting endogenous ADARs with antisense oligonucleotides. Nature Biotechnology. 37: 133-138. PMID 30692694 DOI: 10.1038/S41587-019-0013-6  0.466
2018 Maeder CI, Kim JI, Liang X, Kaganovsky K, Shen A, Li Q, Li Z, Wang S, Xu XZS, Li JB, Xiang YK, Ding JB, Shen K. The THO Complex Coordinates Transcripts for Synapse Development and Dopamine Neuron Survival. Cell. PMID 30146163 DOI: 10.1016/J.Cell.2018.07.046  0.352
2018 Yesselman JD, Tian S, Liu X, Shi L, Li JB, Das R. Updates to the RNA mapping database (RMDB), version 2. Nucleic Acids Research. 46: D375-D379. PMID 30053264 DOI: 10.1093/Nar/Gkx873  0.367
2018 Vogel P, Moschref M, Li Q, Merkle T, Selvasaravanan KD, Li JB, Stafforst T. Efficient and precise editing of endogenous transcripts with SNAP-tagged ADARs. Nature Methods. 15: 535-538. PMID 29967493 DOI: 10.1038/S41592-018-0017-Z  0.44
2017 Xie H, Tang L, He X, Liu X, Zhou C, Liu J, Ge X, Li J, Liu C, Zhao J, Qu J, Song Z, Gu F. SaCas9 requires 5'-NNGRRT-3' PAM for sufficient cleavage and possesses higher cleavage activity than SpCas9 or FnCpf1 in human cells. Biotechnology Journal. PMID 29247600 DOI: 10.1002/biot.201700561  0.308
2017 Yablonovitch AL, Deng P, Jacobson D, Li JB. The evolution and adaptation of A-to-I RNA editing. Plos Genetics. 13: e1007064. PMID 29182635 DOI: 10.1371/Journal.Pgen.1007064  0.373
2017 Yablonovitch AL, Fu J, Li K, Mahato S, Kang L, Rashkovetsky E, Korol AB, Tang H, Michalak P, Zelhof AC, Nevo E, Li JB. Regulation of gene expression and RNA editing in Drosophila adapting to divergent microclimates. Nature Communications. 8: 1570. PMID 29146998 DOI: 10.1038/S41467-017-01658-2  0.345
2017 Walkley CR, Li JB. Rewriting the transcriptome: adenosine-to-inosine RNA editing by ADARs. Genome Biology. 18: 205. PMID 29084589 DOI: 10.1186/S13059-017-1347-3  0.332
2017 Tan MH, Li Q, Shanmugam R, Piskol R, Kohler J, Young AN, Liu KI, Zhang R, Ramaswami G, Ariyoshi K, Gupte A, Keegan LP, George CX, Ramu A, Huang N, ... Li JB, et al. Dynamic landscape and regulation of RNA editing in mammals. Nature. 550: 249-254. PMID 29022589 DOI: 10.1038/Nature24041  0.446
2017 Tu M, Lin L, Cheng Y, He X, Sun H, Xie H, Fu J, Liu C, Li J, Chen D, Xi H, Xue D, Liu Q, Zhao J, Gao C, et al. A 'new lease of life': FnCpf1 possesses DNA cleavage activity for genome editing in human cells. Nucleic Acids Research. PMID 28977650 DOI: 10.1093/nar/gkx783  0.314
2017 Heraud-Farlow JE, Chalk AM, Linder SE, Li Q, Taylor S, White JM, Pang L, Liddicoat BJ, Gupte A, Li JB, Walkley CR. Protein recoding by ADAR1-mediated RNA editing is not essential for normal development and homeostasis. Genome Biology. 18: 166. PMID 28874170 DOI: 10.1186/S13059-017-1301-4  0.413
2017 Lumb JH, Li Q, Popov LM, Ding S, Keith MT, Merrill BD, Greenberg HB, Li JB, Carette JE. DDX6 Represses Aberrant Activation of Interferon-Stimulated Genes. Cell Reports. 20: 819-831. PMID 28746868 DOI: 10.1016/J.Celrep.2017.06.085  0.426
2017 Zhang R, Deng P, Jacobson D, Li JB. Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing. Plos Genetics. 13: e1006563. PMID 28166241 DOI: 10.1371/Journal.Pgen.1006563  0.349
2016 Liddicoat BJ, Hartner JC, Piskol R, Ramaswami G, Chalk AM, Kingsley PD, Sankaran VG, Wall M, Purton LE, Seeburg PH, Palis J, Orkin SH, Lu J, Li JB, Walkley CR. Adenosine-to-insoine RNA editing by ADAR1 is essential for normal murine erythropoiesis. Experimental Hematology. PMID 27373493 DOI: 10.1016/J.Exphem.2016.06.250  0.325
2016 Ramaswami G, Li JB. Identification of human RNA editing sites: a historical perspective. Methods (San Diego, Calif.). PMID 27208508 DOI: 10.1016/J.Ymeth.2016.05.011  0.36
2016 Reid CD, Karra K, Chang J, Piskol R, Li Q, Li JB, Cherry JM, Baker JC. XenMine: A genomic interaction tool for the Xenopus community. Developmental Biology. PMID 27157655 DOI: 10.1016/J.Ydbio.2016.02.034  0.499
2016 George CX, Ramaswami G, Li JB, Samuel CE. Editing of cellular self RNAs by adenosine deaminase ADAR1 suppresses innate immune stress responses. The Journal of Biological Chemistry. PMID 26817845 DOI: 10.1074/Jbc.M115.709014  0.319
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Li JC, ... ... Li J, et al. Observation of a Neutral Structure near the DD[over ¯]^{*} Mass Threshold in e^{+}e^{-}→(DD[over ¯]^{*})^{0}π^{0} at sqrt[s]=4.226 and 4.257 GeV. Physical Review Letters. 115: 222002. PMID 26650295 DOI: 10.1103/Physrevlett.115.222002  0.486
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Li JC, ... ... Li J, et al. Measurement of the Absolute Branching Fraction for Λ_{c}^{+}→Λe^{+}ν_{e}. Physical Review Letters. 115: 221805. PMID 26650293 DOI: 10.1103/Physrevlett.115.221805  0.492
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Li JC, ... ... Li J, et al. Observation of a Neutral Charmoniumlike State Z_{c}(4025)^{0} in e^{+}e^{-}→(D^{*}D[over ¯]^{*})^{0}π^{0}. Physical Review Letters. 115: 182002. PMID 26565461 DOI: 10.1103/Physrevlett.115.182002  0.486
2015 Han L, Diao L, Yu S, Xu X, Li J, Zhang R, Yang Y, Werner HM, Eterovic AK, Yuan Y, Li J, Nair N, Minelli R, Tsang YH, Cheung LW, ... Li JB, et al. The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers. Cancer Cell. PMID 26439496 DOI: 10.1016/J.Ccell.2015.08.013  0.375
2015 Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Li JC, ... ... Li J, et al. Observation of Z_{c}(3900)^{0} in e^{+}e^{-}→π^{0}π^{0}J/ψ. Physical Review Letters. 115: 112003. PMID 26406823 DOI: 10.1103/Physrevlett.115.112003  0.342
2015 Liddicoat BJ, Piskol R, Chalk AM, Ramaswami G, Higuchi M, Hartner JC, Li JB, Seeburg PH, Walkley CR. RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself. Science (New York, N.Y.). 349: 1115-20. PMID 26275108 DOI: 10.1126/Science.Aac7049  0.349
2015 Luo S, Li J, Stoddard TJ, Baltes NJ, Demorest ZL, Clasen BM, Coffman A, Retterath A, Mathis L, Voytas DF, Zhang F. Non-transgenic plant genome editing using purified sequence-specific nucleases. Molecular Plant. PMID 26074033 DOI: 10.1016/J.Molp.2015.05.012  0.328
2015 Rivas MA, Pirinen M, Conrad DF, Lek M, Tsang EK, Karczewski KJ, Maller JB, Kukurba KR, DeLuca DS, Fromer M, Ferreira PG, Smith KS, Zhang R, Zhao F, Banks E, ... Li JB, et al. Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome. Science (New York, N.Y.). 348: 666-9. PMID 25954003 DOI: 10.1126/Science.1261877  0.382
2015 Baran Y, Subramaniam M, Biton A, Tukiainen T, Tsang EK, Rivas MA, Pirinen M, Gutierrez-Arcelus M, Smith KS, Kukurba KR, Zhang R, Eng C, Torgerson DG, Urbanek C, ... Li JB, et al. The landscape of genomic imprinting across diverse adult human tissues. Genome Research. 25: 927-36. PMID 25953952 DOI: 10.1101/Gr.192278.115  0.31
2015 Sapiro AL, Deng P, Zhang R, Li JB. Cis regulatory effects on A-to-I RNA editing in related Drosophila species. Cell Reports. 11: 697-703. PMID 25921533 DOI: 10.1016/J.Celrep.2015.04.005  0.325
2015 Babak T, DeVeale B, Tsang EK, Zhou Y, Li X, Smith KS, Kukurba KR, Zhang R, Li JB, van der Kooy D, Montgomery SB, Fraser HB. Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse. Nature Genetics. 47: 544-9. PMID 25848752 DOI: 10.1038/Ng.3274  0.352
2014 Ren X, Yang Z, Xu J, Sun J, Mao D, Hu Y, Yang SJ, Qiao HH, Wang X, Hu Q, Deng P, Liu LP, Ji JY, Li JB, Ni JQ. Enhanced specificity and efficiency of the CRISPR/Cas9 system with optimized sgRNA parameters in Drosophila. Cell Reports. 9: 1151-62. PMID 25437567 DOI: 10.1016/J.Celrep.2014.09.044  0.369
2014 Satterlee JS, Basanta-Sanchez M, Blanco S, Li JB, Meyer K, Pollock J, Sadri-Vakili G, Rybak-Wolf A. Novel RNA modifications in the nervous system: form and function. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 15170-7. PMID 25392485 DOI: 10.1523/Jneurosci.3236-14.2014  0.304
2014 Kukurba KR, Zhang R, Li X, Smith KS, Knowles DA, How Tan M, Piskol R, Lek M, Snyder M, Macarthur DG, Li JB, Montgomery SB. Allelic expression of deleterious protein-coding variants across human tissues. Plos Genetics. 10: e1004304. PMID 24786518 DOI: 10.1371/Journal.Pgen.1004304  0.371
2014 Bazak L, Haviv A, Barak M, Jacob-Hirsch J, Deng P, Zhang R, Isaacs FJ, Rechavi G, Li JB, Eisenberg E, Levanon EY. A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes. Genome Research. 24: 365-76. PMID 24347612 DOI: 10.1101/Gr.164749.113  0.704
2014 Zhang R, Li X, Ramaswami G, Smith KS, Turecki G, Montgomery SB, Li JB. Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing. Nature Methods. 11: 51-4. PMID 24270603 DOI: 10.1038/Nmeth.2736  0.377
2014 Ramaswami G, Li JB. RADAR: a rigorously annotated database of A-to-I RNA editing. Nucleic Acids Research. 42: D109-13. PMID 24163250 DOI: 10.1093/Nar/Gkt996  0.369
2013 Li JB, Church GM. Deciphering the functions and regulation of brain-enriched A-to-I RNA editing. Nature Neuroscience. 16: 1518-22. PMID 24165678 DOI: 10.1038/Nn.3539  0.519
2013 Piskol R, Ramaswami G, Li JB. Reliable identification of genomic variants from RNA-seq data. American Journal of Human Genetics. 93: 641-51. PMID 24075185 DOI: 10.1016/J.Ajhg.2013.08.008  0.432
2013 Beurdeley M, Bietz F, Li J, Thomas S, Stoddard T, Juillerat A, Zhang F, Voytas DF, Duchateau P, Silva GH. Compact designer TALENs for efficient genome engineering. Nature Communications. 4: 1762. PMID 23612303 DOI: 10.1038/Ncomms2782  0.315
2013 Piskol R, Peng Z, Wang J, Li JB. Lack of evidence for existence of noncanonical RNA editing. Nature Biotechnology. 31: 19-20. PMID 23302925 DOI: 10.1038/Nbt.2472  0.302
2013 Ramaswami G, Zhang R, Piskol R, Keegan LP, Deng P, O'Connell MA, Li JB. Identifying RNA editing sites using RNA sequencing data alone. Nature Methods. 10: 128-32. PMID 23291724 DOI: 10.1038/Nmeth.2330  0.417
2013 Tan MH, Au KF, Yablonovitch AL, Wills AE, Chuang J, Baker JC, Wong WH, Li JB. RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. Genome Research. 23: 201-16. PMID 22960373 DOI: 10.1101/Gr.141424.112  0.426
2013 Eran A, Li JB, Vatalaro K, McCarthy J, Rahimov F, Collins C, Markianos K, Margulies DM, Brown EN, Calvo SE, Kohane IS, Kunkel LM. Comparative RNA editing in autistic and neurotypical cerebella. Molecular Psychiatry. 18: 1041-8. PMID 22869036 DOI: 10.1038/Mp.2012.118  0.345
2013 Beliveau BJ, Joyce EF, Apostolopoulosa N, Yilmaza F, Fonseka CY, McCole RB, Chang Y, Li JB, Senaratne TN, Williams BR, Rouillard J, Wu C. Oligopaints: highly efficient, bioinformatically designed probes for fluorescence in situ hybridization Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-P5  0.417
2013 Liddicoat B, Piskol R, Chalk A, Higuchi M, Seeburg P, Li JB, Hartner J, Walkley CR. A-To-I RNA Editing By ADAR1 Is Essential For Hematopoiesis Blood. 122: 1199-1199. DOI: 10.1182/Blood.V122.21.1199.1199  0.37
2012 Beliveau BJ, Joyce EF, Apostolopoulos N, Yilmaz F, Fonseka CY, McCole RB, Chang Y, Li JB, Senaratne TN, Williams BR, Rouillard JM, Wu CT. Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes. Proceedings of the National Academy of Sciences of the United States of America. 109: 21301-6. PMID 23236188 DOI: 10.1073/Pnas.1213818110  0.343
2012 Bass B, Hundley H, Li JB, Peng Z, Pickrell J, Xiao XG, Yang L. The difficult calls in RNA editing. Interviewed by H Craig Mak. Nature Biotechnology. 30: 1207-9. PMID 23222792 DOI: 10.1038/Nbt.2452  0.353
2012 Ball MP, Thakuria JV, Zaranek AW, Clegg T, Rosenbaum AM, Wu X, Angrist M, Bhak J, Bobe J, Callow MJ, Cano C, Chou MF, Chung WK, Douglas SM, Estep PW, ... ... Li JB, et al. A public resource facilitating clinical use of genomes. Proceedings of the National Academy of Sciences of the United States of America. 109: 11920-7. PMID 22797899 DOI: 10.1073/Pnas.1201904109  0.659
2012 Ramaswami G, Lin W, Piskol R, Tan MH, Davis C, Li JB. Accurate identification of human Alu and non-Alu RNA editing sites. Nature Methods. 9: 579-81. PMID 22484847 DOI: 10.1038/Nmeth.1982  0.383
2012 Lin W, Piskol R, Tan MH, Li JB. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome". Science (New York, N.Y.). 335: 1302; author reply 1. PMID 22422964 DOI: 10.1126/Science.1210624  0.363
2010 Kosuri S, Eroshenko N, Leproust EM, Super M, Way J, Li JB, Church GM. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nature Biotechnology. 28: 1295-9. PMID 21113165 DOI: 10.1038/Nbt.1716  0.7
2010 Eisenberg E, Li JB, Levanon EY. Sequence based identification of RNA editing sites. Rna Biology. 7: 248-52. PMID 20215866 DOI: 10.4161/Rna.7.2.11565  0.446
2009 Lee JH, Park IH, Gao Y, Li JB, Li Z, Daley GQ, Zhang K, Church GM. A robust approach to identifying tissue-specific gene expression regulatory variants using personalized human induced pluripotent stem cells. Plos Genetics. 5: e1000718. PMID 19911041 DOI: 10.1371/Journal.Pgen.1000718  0.527
2009 Zhang K, Li JB, Gao Y, Egli D, Xie B, Deng J, Li Z, Lee JH, Aach J, Leproust EM, Eggan K, Church GM. Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human. Nature Methods. 6: 613-8. PMID 19620972 DOI: 10.1038/Nmeth.1357  0.553
2009 Li JB, Gao Y, Aach J, Zhang K, Kryukov GV, Xie B, Ahlford A, Yoon JK, Rosenbaum AM, Zaranek AW, LeProust E, Sunyaev SR, Church GM. Multiplex padlock targeted sequencing reveals human hypermutable CpG variations. Genome Research. 19: 1606-15. PMID 19525355 DOI: 10.1101/Gr.092213.109  0.735
2009 Li JB, Levanon EY, Yoon JK, Aach J, Xie B, Leproust E, Zhang K, Gao Y, Church GM. Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science (New York, N.Y.). 324: 1210-3. PMID 19478186 DOI: 10.1126/Science.1170995  0.562
2009 Ball MP, Li JB, Gao Y, Lee JH, LeProust EM, Park IH, Xie B, Daley GQ, Church GM. Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nature Biotechnology. 27: 361-8. PMID 19329998 DOI: 10.1038/Nbt.1533  0.569
2007 Porreca GJ, Zhang K, Li JB, Xie B, Austin D, Vassallo SL, LeProust EM, Peck BJ, Emig CJ, Dahl F, Gao Y, Church GM, Shendure J. Multiplex amplification of large sets of human exons. Nature Methods. 4: 931-6. PMID 17934468 DOI: 10.1038/Nmeth1110  0.758
2005 Li JB, Zhang M, Dutcher SK, Stormo GD. Procom: a web-based tool to compare multiple eukaryotic proteomes. Bioinformatics (Oxford, England). 21: 1693-4. PMID 15564299 DOI: 10.1093/Bioinformatics/Bti161  0.582
2004 Li JB, Gerdes JM, Haycraft CJ, Fan Y, Teslovich TM, May-Simera H, Li H, Blacque OE, Li L, Leitch CC, Lewis RA, Green JS, Parfrey PS, Leroux MR, Davidson WS, et al. Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene. Cell. 117: 541-52. PMID 15137946 DOI: 10.1016/S0092-8674(04)00450-7  0.595
2003 Li JB, Lin S, Jia H, Wu H, Roe BA, Kulp D, Stormo GD, Dutcher SK. Analysis of Chlamydomonas reinhardtii genome structure using large-scale sequencing of regions on linkage groups I and III. The Journal of Eukaryotic Microbiology. 50: 145-55. PMID 12836870 DOI: 10.1111/J.1550-7408.2003.Tb00109.X  0.62
Show low-probability matches.