| Year |
Citation |
Score |
| 2021 |
Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, et al. Comprehensive structure and functional adaptations of the yeast nuclear pore complex. Cell. PMID 34982960 DOI: 10.1016/j.cell.2021.12.015 |
0.44 |
|
| 2021 |
Dai L, Singh D, Lu S, Kottadiel VI, Vafabakhsh R, Mahalingam M, Chemla YR, Ha T, Rao VB. A viral genome packaging ring-ATPase is a flexibly coordinated pentamer. Nature Communications. 12: 6548. PMID 34772936 DOI: 10.1038/s41467-021-26800-z |
0.407 |
|
| 2021 |
Poddar A, Azam MS, Kayikcioglu T, Bobrovskyy M, Zhang J, Ma X, Labhsetwar P, Fei J, Singh D, Luthey-Schulten Z, Vanderpool CK, Ha T. Effects of individual base-pairs on in vivo target search and destruction kinetics of bacterial small RNA. Nature Communications. 12: 874. PMID 33558533 DOI: 10.1038/s41467-021-21144-0 |
0.473 |
|
| 2021 |
Lu S, Ye Q, Singh D, Cao Y, Diedrich JK, Yates JR, Villa E, Cleveland DW, Corbett KD. The SARS-CoV-2 nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein. Nature Communications. 12: 502. PMID 33479198 DOI: 10.1038/s41467-020-20768-y |
0.51 |
|
| 2021 |
Wang Y, Mallon J, Wang H, Singh D, Hyun Jo M, Hua B, Bailey S, Ha T. Real-time observation of Cas9 postcatalytic domain motions. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33443184 DOI: 10.1073/pnas.2010650118 |
0.488 |
|
| 2020 |
Yu H, Lu S, Gasior K, Singh D, Vazquez-Sanchez S, Tapia O, Toprani D, Beccari MS, Yates JR, Da Cruz S, Newby JM, Lafarga M, Gladfelter AS, Villa E, Cleveland DW. HSP70 chaperones RNA-free TDP-43 into anisotropic intranuclear liquid spherical shells. Science (New York, N.Y.). PMID 33335017 DOI: 10.1126/science.abb4309 |
0.499 |
|
| 2020 |
Lu S, Ye Q, Singh D, Villa E, Cleveland DW, Corbett KD. The SARS-CoV-2 Nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein. Biorxiv : the Preprint Server For Biology. PMID 32766587 DOI: 10.1101/2020.07.30.228023 |
0.518 |
|
| 2020 |
Wagner FR, Watanabe R, Schampers R, Singh D, Persoon H, Schaffer M, Fruhstorfer P, Plitzko J, Villa E. Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography. Nature Protocols. PMID 32405053 DOI: 10.1038/S41596-020-0320-X |
0.432 |
|
| 2019 |
Okafor IC, Singh D, Wang Y, Jung M, Wang H, Mallon J, Bailey S, Lee JK, Ha T. Single molecule analysis of effects of non-canonical guide RNAs and specificity-enhancing mutations on Cas9-induced DNA unwinding. Nucleic Acids Research. PMID 31713616 DOI: 10.1093/Nar/Gkz1058 |
0.554 |
|
| 2018 |
Singh D, Mallon J, Poddar A, Wang Y, Tippana R, Yang O, Bailey S, Ha T. Real-time observation of DNA target interrogation and product release by the RNA-guided endonuclease CRISPR Cpf1 (Cas12a). Proceedings of the National Academy of Sciences of the United States of America. PMID 29735714 DOI: 10.1073/Pnas.1718686115 |
0.587 |
|
| 2018 |
Singh D, Wang Y, Mallon J, Yang O, Fei J, Poddar A, Ceylan D, Bailey S, Ha T. Mechanisms of improved specificity of engineered Cas9s revealed by single-molecule FRET analysis. Nature Structural & Molecular Biology. 25: 347-354. PMID 29622787 DOI: 10.1038/S41594-018-0051-7 |
0.552 |
|
| 2018 |
Hua B, Wang Y, Park S, Han KY, Singh D, Kim JH, Cheng W, Ha T. Single-molecule centroid localization algorithm improves the accuracy of fluorescence binding assays. Biochemistry. PMID 29457977 DOI: 10.1021/Acs.Biochem.7B01293 |
0.538 |
|
| 2018 |
Singh D, Ha T. Understanding the molecular mechanisms of CRISPR toolbox using single molecule approaches. Acs Chemical Biology. PMID 29394047 DOI: 10.1021/Acschembio.7B00905 |
0.486 |
|
| 2018 |
Wang Y, Singh D, Mallon J, Hua B, Bailey S, Ha T. Simultaneous Real-Time Observation of DNA Unwinding and Nuclease Domain Activation in Cas9-RNA-DNA Complex via Three-Color Single Molecule FRET Biophysical Journal. 114: 572a. DOI: 10.1016/J.Bpj.2017.11.3127 |
0.566 |
|
| 2017 |
Singh D, Mallon J, Tipanna R, Poddar A, Yang O, Bailey S, Ha T. Investigation of DNA Binding, Nucleolysis and Product Release Specificity of RNA Guided Endonuclease CRISPR-Cpf1 Family Reveals Important Differences from Cas9-RNA Biophysical Journal. 112: 472a. DOI: 10.1016/J.Bpj.2016.11.2531 |
0.549 |
|
| 2016 |
Singh D, Sternberg SH, Fei J, Doudna JA, Ha T. Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9. Nature Communications. 7: 12778. PMID 27624851 DOI: 10.1038/Ncomms12778 |
0.597 |
|
| 2016 |
Dai L, Singh D, Vafabakhsh R, Mahalingam M, Kottadiel V, Chemla Y, Ha T, Rao VB. Mechanism of Coordination of the Bacteriophage T4 DNA Packaging Motor Analyzed by Real-Time Single Molecule Fluorescence Assay Biophysical Journal. 110: 46a. DOI: 10.1016/J.Bpj.2015.11.316 |
0.483 |
|
| 2015 |
Fei J, Singh D, Zhang Q, Park S, Balasubramanian D, Golding I, Vanderpool CK, Ha T. RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA. Science (New York, N.Y.). 347: 1371-4. PMID 25792329 DOI: 10.1126/Science.1258849 |
0.544 |
|
| 2015 |
Singh D, Sternberg SH, Fei J, Doudna JA, Ha T. Real-Time Observation of DNA Recognition by the RNA-Guided Endonuclease Cas9 using Single-Molecule FRET Biophysical Journal. 108: 26a. DOI: 10.1016/J.Bpj.2014.11.169 |
0.605 |
|
| 2014 |
Hua B, Han KY, Zhou R, Kim H, Shi X, Abeysirigunawardena SC, Jain A, Singh D, Aggarwal V, Woodson SA, Ha T. An improved surface passivation method for single-molecule studies. Nature Methods. 11: 1233-6. PMID 25306544 DOI: 10.1038/Nmeth.3143 |
0.639 |
|
| 2014 |
Fei J, Singh D, Zhang Q, Park S, Golding I, Vanderpool CK, Ha T. Watching Gene Regulation by Small RNA in Bacteria with Super-Resolution Imaging Biophysical Journal. 106: 434a. DOI: 10.1016/J.Bpj.2013.11.2447 |
0.542 |
|
| Show low-probability matches. |