| Year |
Citation |
Score |
| 2023 |
Seah YM, Stewart MK, Hoogestraat D, Ryder M, Cookson BT, Salipante SJ, Hoffman NG. Evaluation of Variant Calling Methods for Bacterial Whole-Genome Sequencing Assays. Journal of Clinical Microbiology. e0184222. PMID 37428072 DOI: 10.1128/jcm.01842-22 |
0.372 |
|
| 2022 |
Hayden HS, Joshi S, Radey MC, Vo AT, Forsberg C, Morgan SJ, Waalkes A, Holmes EA, Klee SM, Emond MJ, Singh PK, Salipante SJ. Genome Capture Sequencing Selectively Enriches Bacterial DNA and Enables Genome-Wide Measurement of Intrastrain Genetic Diversity in Human Infections. Mbio. e0142422. PMID 36121157 DOI: 10.1128/mbio.01424-22 |
0.338 |
|
| 2021 |
De Sarkar N, Dasgupta S, Chatterjee P, Coleman I, Ha G, Ang LS, Kohlbrenner EA, Frank SB, Nunez TA, Salipante SJ, Corey E, Morrissey C, Van Allen E, Schweizer MT, Haffner MC, et al. Genomic attributes of homology-directed DNA repair deficiency in metastatic prostate cancer. Jci Insight. 6. PMID 34877933 DOI: 10.1172/jci.insight.152789 |
0.349 |
|
| 2020 |
Kuo AJ, Paulson VA, Hempelmann JA, Beightol M, Todhunter S, Colbert BG, Salipante SJ, Konnick EQ, Pritchard CC, Lockwood CM. Validation and implementation of a modular targeted capture assay for the detection of clinically significant molecular oncology alterations. Practical Laboratory Medicine. 19: e00153. PMID 32123717 DOI: 10.1016/j.plabm.2020.e00153 |
0.34 |
|
| 2019 |
Barnell EK, Waalkes A, Mosior MC, Penewit K, Cotto KC, Danos AM, Sheta LM, Campbell KM, Krysiak K, Rieke D, Spies NC, Skidmore ZL, Pritchard CC, Fehniger TA, Uppaluri R, ... ... Salipante SJ, et al. Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes. Jco Clinical Cancer Informatics. 3: 1-12. PMID 31618044 DOI: 10.1200/CCI.19.00077 |
0.316 |
|
| 2019 |
McLean K, Holmes EA, Penewit K, Lee DK, Hardy SR, Ren M, Krist MP, Huang K, Waalkes A, Salipante SJ. Artificial selection for pathogenicity mutations in identifies novel factors relevant to chronic infection. Infection and Immunity. PMID 30642903 DOI: 10.1128/IAI.00884-18 |
0.314 |
|
| 2018 |
Hause RJ, Pritchard CC, Shendure J, Salipante SJ. Corrigendum: Classification and characterization of microsatellite instability across 18 cancer types. Nature Medicine. 24: 525. PMID 29634692 DOI: 10.1038/nm0418-525a |
0.419 |
|
| 2018 |
Wu D, Waalkes A, Penewit K, Salipante SJ. Ultrasensitive Detection of Chimerism by Single-Molecule Molecular Inversion Probe Capture and High-Throughput Sequencing of Copy Number Deletion Polymorphisms. Clinical Chemistry. PMID 29549183 DOI: 10.1373/clinchem.2017.284737 |
0.307 |
|
| 2018 |
Grasso C, Giannakis M, Wells D, Wheeler D, Shinbrot E, Zaidi S, Huyghe J, Geybels M, Salipante S, Abril-Rodriguez G, Escuin-Ordinas H, Puig-Saus C, Shin DS, Ogino S, Ribas A, et al. Abstract B011: Immunoediting in untreated mismatch repair deficient colorectal cancer Molecular Cancer Therapeutics. 17. DOI: 10.1158/1535-7163.Targ-17-B011 |
0.41 |
|
| 2018 |
Werth B, Penewit K, Salipante S, Shen T, Xu L, Nath A. 712. Identification of a Novel Tedizolid Resistance Mutation in rpoB of Methicillin-Resistant Staphylococcus aureus Open Forum Infectious Diseases. 5: S256-S256. DOI: 10.1093/Ofid/Ofy210.719 |
0.306 |
|
| 2018 |
Mclean K, Holmes E, Penewit K, Waalkes A, Ren M, Harwood R, Lee S, Gasper J, Manoil C, Salipante S. P036 Whole genome variant analysis and transposon sequencing provides insight into aztreonam resistance in cystic fibrosis Pseudomonas aeruginosa airway infection Journal of Cystic Fibrosis. 17: S69. DOI: 10.1016/S1569-1993(18)30333-3 |
0.312 |
|
| 2017 |
Hause RJ, Pritchard CC, Shendure J, Salipante SJ. Corrigendum: Classification and characterization of microsatellite instability across 18 cancer types. Nature Medicine. 23: 1241. PMID 28985213 DOI: 10.1038/Nm1017-1241A |
0.419 |
|
| 2017 |
Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ. Correction: A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota. Plos Genetics. 13: e1006724. PMID 28410416 DOI: 10.1371/journal.pgen.1006724 |
0.71 |
|
| 2016 |
Hause RJ, Pritchard CC, Shendure J, Salipante SJ. Classification and characterization of microsatellite instability across 18 cancer types. Nature Medicine. PMID 27694933 DOI: 10.1038/Nm.4191 |
0.492 |
|
| 2016 |
Cohen SA, Turner EH, Beightol MB, Jacobson A, Gooley TA, Salipante SJ, Haraldsdottir S, Smith C, Scroggins S, Tait JF, Grady WM, Lin EH, Cohn DE, Goodfellow PJ, Arnold MW, et al. Frequent PIK3CA Mutations in Colorectal and Endometrial Tumors with 2 or More Somatic Mutations in Mismatch Repair Genes. Gastroenterology. PMID 27302833 DOI: 10.1053/J.Gastro.2016.06.004 |
0.518 |
|
| 2016 |
Mathias PC, Turner EH, Scroggins SM, Salipante SJ, Hoffman NG, Pritchard CC, Shirts BH. Applying Ancestry and Sex Computation as a Quality Control Tool in Targeted Next-Generation Sequencing. American Journal of Clinical Pathology. 145: 308-15. PMID 27124912 DOI: 10.1093/Ajcp/Aqv098 |
0.499 |
|
| 2016 |
Shirts BH, Casadei S, Jacobson AL, Lee MK, Gulsuner S, Bennett RL, Miller M, Hall SA, Hampel H, Hisama FM, Naylor LV, Goetsch C, Leppig K, Tait JF, Scroggins SM, ... ... Salipante SJ, et al. Improving performance of multigene panels for genomic analysis of cancer predisposition. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 26845104 DOI: 10.1038/Gim.2015.212 |
0.547 |
|
| 2016 |
Grasso CS, Shinbrot E, Yu M, Liesersen M, Chaisson M, Chan A, Connolly C, Dai J, Du M, Fuchs C, Garraway L, Giannakis M, Harrison T, Hsu L, Huyghe J, ... ... Salipante S, et al. Abstract 136: Refining the molecular profile of colorectal tumors to expand prevention and treatment opportunities Cancer Research. 76: 136-136. DOI: 10.1158/1538-7445.Am2016-136 |
0.443 |
|
| 2015 |
Salipante SJ, Adey A, Thomas A, Lee C, Liu YJ, Kumar A, Lewis AP, Wu D, Fromm JR, Shendure J. Recurrent somatic loss of TNFRSF14 in classical Hodgkin lymphoma. Genes, Chromosomes & Cancer. PMID 26650888 DOI: 10.1002/Gcc.22331 |
0.676 |
|
| 2015 |
Hempelmann JA, Scroggins SM, Pritchard CC, Salipante SJ. MSIplus for Integrated Colorectal Cancer Molecular Testing by Next-Generation Sequencing. The Journal of Molecular Diagnostics : Jmd. 17: 705-14. PMID 26322950 DOI: 10.1016/j.jmoldx.2015.05.008 |
0.354 |
|
| 2015 |
Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ. A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota. Plos Genetics. 11: e1005413. PMID 26230489 DOI: 10.1371/Journal.Pgen.1005413 |
0.724 |
|
| 2015 |
Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT. Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology. Journal of Clinical Microbiology. 53: 1072-9. PMID 25631811 DOI: 10.1128/Jcm.03385-14 |
0.318 |
|
| 2015 |
Salipante SJ, Roach DJ, Kitzman JO, Snyder MW, Stackhouse B, Butler-Wu SM, Lee C, Cookson BT, Shendure J. Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains. Genome Research. 25: 119-28. PMID 25373147 DOI: 10.1101/Gr.180190.114 |
0.727 |
|
| 2015 |
Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ. A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota Plos Genetics. 11. DOI: 10.1371/journal.pgen.1005413 |
0.711 |
|
| 2015 |
Shiovitz S, Turner E, Beightol M, Jacobson A, Gooley T, Salipante SJ, Haraldsdottir S, Tait JF, Grady WM, Lin EH, De La Chapelle A, Cohn DE, Goodfellow PJ, Arnold M, Hampel H, et al. PIK3CA mutations in colorectal and endometrial cancer with double somatic mismatch repair mutations compared to Lynch syndrome. Journal of Clinical Oncology. 33: 3550-3550. DOI: 10.1200/Jco.2015.33.15_Suppl.3550 |
0.541 |
|
| 2014 |
Pritchard CC, Morrissey C, Kumar A, Zhang X, Smith C, Coleman I, Salipante SJ, Milbank J, Yu M, Grady WM, Tait JF, Corey E, Vessella RL, Walsh T, Shendure J, et al. Complex MSH2 and MSH6 mutations in hypermutated microsatellite unstable advanced prostate cancer. Nature Communications. 5: 4988. PMID 25255306 DOI: 10.1038/Ncomms5988 |
0.568 |
|
| 2014 |
Salipante SJ, Sengupta DJ, Cummings LA, Robinson A, Kurosawa K, Hoogestraat DR, Cookson BT. Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates. International Journal of Medical Microbiology : Ijmm. 304: 1001-10. PMID 25116839 DOI: 10.1016/J.Ijmm.2014.07.003 |
0.368 |
|
| 2014 |
Salipante SJ, Scroggins SM, Hampel HL, Turner EH, Pritchard CC. Microsatellite instability detection by next generation sequencing. Clinical Chemistry. 60: 1192-9. PMID 24987110 DOI: 10.1373/clinchem.2014.223677 |
0.557 |
|
| 2014 |
SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ. Whole-genome sequencing for high-resolution investigation of methicillin-resistant Staphylococcus aureus epidemiology and genome plasticity. Journal of Clinical Microbiology. 52: 2787-96. PMID 24850346 DOI: 10.1128/Jcm.00759-14 |
0.573 |
|
| 2014 |
Salipante SJ, Fromm JR, Shendure J, Wood BL, Wu D. Detection of minimal residual disease in NPM1-mutated acute myeloid leukemia by next-generation sequencing. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 27: 1438-46. PMID 24743218 DOI: 10.1038/Modpathol.2014.57 |
0.514 |
|
| 2014 |
Shirts BH, Salipante SJ, Casadei S, Ryan S, Martin J, Jacobson A, Vlaskin T, Koehler K, Livingston RJ, King MC, Walsh T, Pritchard CC. Deep sequencing with intronic capture enables identification of an APC exon 10 inversion in a patient with polyposis. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 16: 783-6. PMID 24675673 DOI: 10.1038/Gim.2014.30 |
0.312 |
|
| 2014 |
Pritchard CC, Salipante SJ, Koehler K, Smith C, Scroggins S, Wood B, Wu D, Lee MK, Dintzis S, Adey A, Liu Y, Eaton KD, Martins R, Stricker K, Margolin KA, et al. Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer specimens. The Journal of Molecular Diagnostics : Jmd. 16: 56-67. PMID 24189654 DOI: 10.1016/J.Jmoldx.2013.08.004 |
0.685 |
|
| 2014 |
SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ. Whole-genome sequencing for high-resolution investigation of methicillin-resistant Staphylococcus aureus epidemiology and genome plasticity Journal of Clinical Microbiology. 52: 2787-2796. DOI: 10.1128/JCM.00759-14 |
0.518 |
|
| 2014 |
Salipante SJ, Fromm JR, Shendure J, Wood BL, Wu D. Detection of minimal residual disease in NPM1-mutated acute myeloid leukemia by next-generation sequencing Modern Pathology. 27: 1438-1446. DOI: 10.1038/modpathol.2014.57 |
0.482 |
|
| 2013 |
Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, et al. Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections. Plos One. 8: e65226. PMID 23734239 DOI: 10.1371/Journal.Pone.0065226 |
0.526 |
|
| 2013 |
Hiatt JB, Pritchard CC, Salipante SJ, O'Roak BJ, Shendure J. Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation. Genome Research. 23: 843-54. PMID 23382536 DOI: 10.1101/Gr.147686.112 |
0.721 |
|
| 2012 |
Pritchard CC, Smith C, Salipante SJ, Lee MK, Thornton AM, Nord AS, Gulden C, Kupfer SS, Swisher EM, Bennett RL, Novetsky AP, Jarvik GP, Olopade OI, Goodfellow PJ, King MC, et al. ColoSeq provides comprehensive lynch and polyposis syndrome mutational analysis using massively parallel sequencing. The Journal of Molecular Diagnostics : Jmd. 14: 357-66. PMID 22658618 DOI: 10.1016/J.Jmoldx.2012.03.002 |
0.368 |
|
| 2012 |
Carlson CA, Kas A, Kirkwood R, Hays LE, Preston BD, Salipante SJ, Horwitz MS. Decoding cell lineage from acquired mutations using arbitrary deep sequencing. Nature Methods. 9: 78-80. PMID 22120468 DOI: 10.1038/Nmeth.1781 |
0.339 |
|
| 2011 |
Kumar A, White TA, MacKenzie AP, Clegg N, Lee C, Dumpit RF, Coleman I, Ng SB, Salipante SJ, Rieder MJ, Nickerson DA, Corey E, Lange PH, Morrissey C, Vessella RL, et al. Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers. Proceedings of the National Academy of Sciences of the United States of America. 108: 17087-92. PMID 21949389 DOI: 10.1073/Pnas.1108745108 |
0.677 |
|
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