Noa Liscovitch - Related publications

2011-2015 Brain Research Center Bar-Ilan University, Jerusalem, Jerusalem District, Israel 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Sellamuthu G, Amin S, Bílý J, Synek J, Modlinger R, Sen MK, Chakraborty A, Roy A. Reference Gene Selection for Normalizing Gene Expression in (Coleoptera: Curculionidae: Scolytinae) Under Different Experimental Conditions. Frontiers in Physiology. 12: 752768. PMID 34777015 DOI: 10.3389/fphys.2021.752768   
2021 Hu J, Li X, Coleman K, Schroeder A, Ma N, Irwin DJ, Lee EB, Shinohara RT, Li M. SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network. Nature Methods. PMID 34711970 DOI: 10.1038/s41592-021-01255-8   
2021 Ramos EI, Yang B, Vasquez YM, Lin KY, Choudhari R, Gadad SS. Characterization of the Testis-specific Gene Reveals Isoform-specific Roles in Controlling Biological Processes. Journal of the Endocrine Society. 5: bvab153. PMID 34703959 DOI: 10.1210/jendso/bvab153   
2021 Chung H, Parkhurst CN, Magee EM, Phillips D, Habibi E, Chen F, Yeung BZ, Waldman J, Artis D, Regev A. Joint single-cell measurements of nuclear proteins and RNA in vivo. Nature Methods. 18: 1204-1212. PMID 34608310 DOI: 10.1038/s41592-021-01278-1   
2021 Huang J, Sheng J, Wang D. Manifold learning analysis suggests strategies to align single-cell multimodal data of neuronal electrophysiology and transcriptomics. Communications Biology. 4: 1308. PMID 34799674 DOI: 10.1038/s42003-021-02807-6   
2021 Majumder S, Pal V, Thakran Y, Singh K. Fuzzy and Rough Set Theory Based Computational Framework for Mining Genetic Interaction Triplets from Gene Expression Profiles for Lung Adenocarcinoma. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 34665736 DOI: 10.1109/TCBB.2021.3120844   
2021 Zhang M, Li N, Yang W, Liu B. Genome-wide differences in gene expression and alternative splicing in developing embryo and endosperm, and between F1 hybrids and their parental pure lines in sorghum. Plant Molecular Biology. PMID 34846608 DOI: 10.1007/s11103-021-01196-y   
2021 Reiter T, Montpetit R, Runnebaum R, Brown CT, Montpetit B. Charting Shifts in Saccharomyces cerevisiae Gene Expression across Asynchronous Time Trajectories with Diffusion Maps. Mbio. e0234521. PMID 34607457 DOI: 10.1128/mBio.02345-21   
2021 Cridland JM, Majane AC, Zhao L, Begun DJ. Population biology of accessory gland-expressed de novo genes in Drosophila melanogaster. Genetics. PMID 34791207 DOI: 10.1093/genetics/iyab207   
2021 Rashid M, Shah SG, Natu A, Verma T, Rauniyar S, Gera PB, Gupta S. RPS13, a potential universal reference gene for normalisation of gene expression in multiple human normal and cancer tissue samples. Molecular Biology Reports. PMID 34657252 DOI: 10.1007/s11033-021-06828-6   
2021 Savinov A, Brandsen BM, Angell BE, Cuperus JT, Fields S. Effects of sequence motifs in the yeast 3' untranslated region determined from massively parallel assays of random sequences. Genome Biology. 22: 293. PMID 34663436 DOI: 10.1186/s13059-021-02509-6   
2021 Lambert JT, Su-Feher L, Cichewicz K, Warren TL, Zdilar I, Wang Y, Lim KJ, Haigh JL, Morse SJ, Canales CP, Stradleigh TW, Castillo Palacios E, Haghani V, Moss SD, Parolini H, et al. Parallel functional testing identifies enhancers active in early postnatal mouse brain. Elife. 10. PMID 34605404 DOI: 10.7554/eLife.69479   
2021 Zhang T, Chen S, Peng Y, Wang C, Cheng X, Zhao R, Liu K. NOVA1-Mediated SORBS2 Isoform Promotes Colorectal Cancer Migration by Activating the Notch Pathway. Frontiers in Cell and Developmental Biology. 9: 673873. PMID 34692669 DOI: 10.3389/fcell.2021.673873   
2021 Markus BM, Boydston EA, Lourido S. CRISPR-Mediated Transcriptional Repression in Toxoplasma gondii. Msphere. e0047421. PMID 34643425 DOI: 10.1128/mSphere.00474-21   
2021 Lall S, Ray S, Bandyopadhyay S. RgCop-A regularized copula based method for gene selection in single cell rna-seq data. Plos Computational Biology. 17: e1009464. PMID 34665808 DOI: 10.1371/journal.pcbi.1009464   
2021 Liang W, Zou X, Li G, Zhou S, Tian C, Schaefke B. Systematic Analysis of Monoallelic Gene Expression and Chromatin Accessibility Across Multiple Tissues in Hybrid Mice. Frontiers in Cell and Developmental Biology. 9: 717555. PMID 34631706 DOI: 10.3389/fcell.2021.717555   
2021 Wang ZK, Gong JS, Qin J, Li H, Lu ZM, Shi JS, Xu ZH. Improving the Intensity of Integrated Expression for Microbial Production. Acs Synthetic Biology. PMID 34738786 DOI: 10.1021/acssynbio.1c00334   
2021 Andrade Barbosa B, van Asten SD, Oh JW, Farina-Sarasqueta A, Verheij J, Dijk F, van Laarhoven HWM, Ylstra B, Garcia Vallejo JJ, van de Wiel MA, Kim Y. Bayesian log-normal deconvolution for enhanced in silico microdissection of bulk gene expression data. Nature Communications. 12: 6106. PMID 34671028 DOI: 10.1038/s41467-021-26328-2   
2021 Haque MN, Sharmin S, Ali AA, Sajib AA, Shoyaib M. Use of relevancy and complementary information for discriminatory gene selection from high-dimensional gene expression data. Plos One. 16: e0230164. PMID 34613963 DOI: 10.1371/journal.pone.0230164   
2021 Xia Y, Yang J, Ma L, Yan S, Pang Y. Genome-Wide Identification and Analyses of Drought/Salt-Responsive Cytochrome Genes in . International Journal of Molecular Sciences. 22. PMID 34576120 DOI: 10.3390/ijms22189957   
2021 Starks RR, Kaur H, Tuteja G. Mapping cis-regulatory elements in the midgestation mouse placenta. Scientific Reports. 11: 22331. PMID 34785717 DOI: 10.1038/s41598-021-01664-x   
2021 Johansson PA, Brattås PL, Douse CH, Hsieh P, Adami A, Pontis J, Grassi D, Garza R, Sozzi E, Cataldo R, Jönsson ME, Atacho DAM, Pircs K, Eren F, Sharma Y, et al. A cis-acting structural variation at the ZNF558 locus controls a gene regulatory network in human brain development. Cell Stem Cell. PMID 34624206 DOI: 10.1016/j.stem.2021.09.008   
2021 Nair VD, Vasoya M, Nair V, Smith GR, Pincas H, Ge Y, Douglas CM, Esser KA, Sealfon SC. Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle. Genomics. 113: 3827-3841. PMID 34547403 DOI: 10.1016/j.ygeno.2021.09.013   
2021 Wang K, Dai R, Xia Y, Tian J, Jiao C, Mikhailova T, Zhang C, Chen C, Liu C. Spatiotemporal specificity of correlated DNA methylation and gene expression pairs across different human tissues and stages of brain development. Epigenetics. PMID 34652256 DOI: 10.1080/15592294.2021.1993607   
2021 Chutimanukul P, Saputro TB, Mahaprom P, Plaimas K, Comai L, Buaboocha T, Siangliw M, Toojinda T, Chadchawan S. Combining Genome and Gene Co-expression Network Analyses for the Identification of Genes Potentially Regulating Salt Tolerance in Rice. Frontiers in Plant Science. 12: 704549. PMID 34512689 DOI: 10.3389/fpls.2021.704549   
2021 Sun S, Liu Z, Jiang Q, Zou Y. Embryonic expression patterns of TBC1D10 subfamily genes in zebrafish. Gene Expression Patterns : Gep. 119226. PMID 34843939 DOI: 10.1016/j.gep.2021.119226   
2021 Alto SI, Chang CN, Brown K, Kioussi C, Filtz TM. Gene Expression Profiling of Skeletal Muscles. Genes. 12. PMID 34828324 DOI: 10.3390/genes12111718   
2021 Chiba Y, Yoshizaki K, Tian T, Miyazaki K, Martin D, , Saito K, Yamada A, Fukumoto S. Integration of Single-Cell RNA- and CAGE-seq Reveals Tooth-Enriched Genes. Journal of Dental Research. 220345211049785. PMID 34806461 DOI: 10.1177/00220345211049785   
2021 Zhong XL, Qian BP, Huang JC, Zhao SZ, Li Y, Qiu Y. Low expression of TCP1 (T-Complex 1) and PSMC1 (Proteasome 26S subunit, ATPase 1) in heterotopic ossification during ankylosing spondylitis. Bioengineered. 12: 7459-7469. PMID 34612770 DOI: 10.1080/21655979.2021.1975981   
2021 Zhang H, Wu J, Li Y, Jin G, Tian Y, Kang S. Identification of Key Differentially Methylated/Expressed Genes and Pathways for Ovarian Endometriosis by Bioinformatics Analysis. Reproductive Sciences (Thousand Oaks, Calif.). PMID 34671938 DOI: 10.1007/s43032-021-00751-8   
2021 Mao M, Xue Y, He Y, Zhou X, Hu H, Liu J, Feng L, Yang W, Luo J, Zhang H, Li X, Ma J. Validation of Reference Genes for Quantitative Real-Time PCR Normalization in var. During Chimeric Leaf Development and Response to Hormone Stimuli. Frontiers in Genetics. 12: 716137. PMID 34745205 DOI: 10.3389/fgene.2021.716137   
2021 Li H, Zhu B, Xu Z, Adams T, Kaminski N, Zhao H. A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data. Bmc Bioinformatics. 22: 524. PMID 34702190 DOI: 10.1186/s12859-021-04412-0   
2021 Tkáčová Z, Bhide K, Mochnáčová E, Petroušková P, Hruškovicová J, Kulkarni A, Bhide M. Comprehensive Mapping of the Cell Response to in the Brain Microvascular Endothelial Cells Using RNA-Seq. Frontiers in Microbiology. 12: 760627. PMID 34819924 DOI: 10.3389/fmicb.2021.760627   
2021 Gong K, Zhou H, Liu H, Xie T, Luo Y, Guo H, Chen J, Tan Z, Yang Y, Xie L. Identification and Integrate Analysis of Key Biomarkers for Diagnosis and Prognosis of Non-Small Cell Lung Cancer Based on Bioinformatics Analysis. Technology in Cancer Research & Treatment. 20: 15330338211060202. PMID 34825846 DOI: 10.1177/15330338211060202   
2021 Xing S, Liu R, Zhao G, Groenen MAM, Madsen O, Liu L, Zheng M, Wang Q, Wu Z, Crooijmans RPMA, Wen J. Time Course Transcriptomic Study Reveals the Gene Regulation During Liver Development and the Correlation With Abdominal Fat Weight in Chicken. Frontiers in Genetics. 12: 723519. PMID 34567076 DOI: 10.3389/fgene.2021.723519   
2021 Darrah KE, Deiters A. Translational control of gene function through optically regulated nucleic acids. Chemical Society Reviews. 50: 13253-13267. PMID 34739027 DOI: 10.1039/d1cs00257k   
2021 Hu M, Zou L, Lu J, Yang Z, Chen Y, Xu Y, Sun C. Construction of a 5-feature gene model by support vector machine for classifying osteoporosis samples. Bioengineered. 12: 6821-6830. PMID 34622712 DOI: 10.1080/21655979.2021.1971026   
2021 Thakur T, Batra I, Luthra M, Vimal S, Dhiman G, Malik A, Shabaz M. Gene Expression-Assisted Cancer Prediction Techniques. Journal of Healthcare Engineering. 2021: 4242646. PMID 34545300 DOI: 10.1155/2021/4242646   
2021 Kumar S, Ruggles A, Logan S, Mazarakis A, Tyson T, Bates M, Grosse C, Reed D, Li Z, Grimwood J, Schmutz J, Saski C. Comparative Transcriptomics of Non-Embryogenic and Embryogenic Callus in Semi-Recalcitrant and Non-Recalcitrant Upland Cotton Lines. Plants (Basel, Switzerland). 10. PMID 34579308 DOI: 10.3390/plants10091775   
2021 El Ahdab N, Haque M, Madogwe E, Koski KG, Scott ME. Maternal nematode infection upregulates expression of Th2/Treg and diapedesis related genes in the neonatal brain. Scientific Reports. 11: 22082. PMID 34764345 DOI: 10.1038/s41598-021-01510-0   
2021 Huang S, Wu T, Lau AY, Au C, Huang H, Wang X, Kim JY. Attention to time-of-day variability improves the reproducibility of gene expression patterns in multiple sclerosis. Iscience. 24: 103247. PMID 34746708 DOI: 10.1016/j.isci.2021.103247   
2021 Dhakal P, Strawn M, Samal A, Behura SK. Fetal Brain Elicits Sexually Conflicting Transcriptional Response to the Ablation of Uterine Forkhead Box A2 () in Mice. International Journal of Molecular Sciences. 22. PMID 34575858 DOI: 10.3390/ijms22189693   
2021 Wang Y, Li Z, Yang G, Cai L, Yang F, Zhang Y, Zeng Y, Ma Q, Zeng F. The Study of Alternative Splicing Events in Human Induced Pluripotent Stem Cells From a Down's Syndrome Patient. Frontiers in Cell and Developmental Biology. 9: 661381. PMID 34660567 DOI: 10.3389/fcell.2021.661381   
2021 Liao Y, Kuang C, Bao Z, He Y, Gu L, Tao Q, Qiu X, Dipritu G, Kong X, Zhang L, Peng J, Jiang Y, Yin S. Nucleo-cytoplasmic RNA distribution responsible for maintaining neuroinflammatory microenvironment. Rna Biology. 1-15. PMID 34843419 DOI: 10.1080/15476286.2021.2004684   
2021 Fraser LCR, Dikdan RJ, Dey S, Singh A, Tyagi S. Reduction in gene expression noise by targeted increase in accessibility at gene loci. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34625470 DOI: 10.1073/pnas.2018640118   
2021 Liu R, Guo Z, Lu S. Genome-Wide Identification and Expression Analysis of the Aux/IAA and Auxin Response Factor Gene Family in . International Journal of Molecular Sciences. 22. PMID 34638833 DOI: 10.3390/ijms221910494   
2021 Zhang H, Wang Y, Feng J, Wang S, Wang Y, Kong W, Zhang Z. Integrative Analysis for Elucidating Transcriptomics Landscapes of Systemic Lupus Erythematosus. Frontiers in Genetics. 12: 782005. PMID 34804130 DOI: 10.3389/fgene.2021.782005   
2021 Shen L, Lan L, Zhu T, Chen H, Gu H, Wang C, Chen Y, Wang M, Tu H, Enghard P, Jiang H, Chen J. Identification and Validation of IFI44 as Key Biomarker in Lupus Nephritis. Frontiers in Medicine. 8: 762848. PMID 34760904 DOI: 10.3389/fmed.2021.762848   
2021 Wu Y, Zhang C, Yang H, Lyu L, Li W, Wu W. Selection and Validation of Candidate Reference Genes for Gene Expression Analysis by RT-qPCR in . International Journal of Molecular Sciences. 22. PMID 34638877 DOI: 10.3390/ijms221910533   
2021 Bonet B, Ra Y, Cantu Morin LM, Soto Bustos J, Livny J, Traxler MF. The Conservon System Is a Global Regulator of Specialized Metabolism in Streptomyces coelicolor during Interspecies Interactions. Msystems. 6: e0028121. PMID 34636667 DOI: 10.1128/mSystems.00281-21