Rockwell R Anyoha - Related publications

Harvard University, Cambridge, MA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Noh H, Hua Z, Chrysinas P, Shoemaker JE, Gunawan R. DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks. Bmc Bioinformatics. 22: 108. PMID 33663384 DOI: 10.1186/s12859-021-04046-2   
2021 Duan A, Wang H, Zhu Y, Wang Q, Zhang J, Hou Q, Xing Y, Shi J, Hou J, Qin Z, Chen Z, Liu Z, Yang J. Chromatin architecture reveals cell type-specific target genes for kidney disease risk variants. Bmc Biology. 19: 38. PMID 33627123 DOI: 10.1186/s12915-021-00977-7   
2021 Singh D, Yi SV. Enhancer pleiotropy, gene expression, and the architecture of human enhancer-gene interactions. Molecular Biology and Evolution. PMID 33749795 DOI: 10.1093/molbev/msab085   
2021 von Scheidt M, Zhao Y, de Aguiar Vallim TQ, Che N, Wierer M, Seldin MM, Franzén O, Kurt Z, Pang S, Bongiovanni D, Yamamoto M, Edwards PA, Ruusalepp A, Kovacic JC, Mann M, et al. The Transcription Factor MAFF Regulates an Atherosclerosis Relevant Network Connecting Inflammation and Cholesterol Metabolism. Circulation. PMID 33626882 DOI: 10.1161/CIRCULATIONAHA.120.050186   
2021 Pant N, Madhumita M, Paul S. CorGO: An Integrated Method for Clustering Functionally Similar Genes. Interdisciplinary Sciences, Computational Life Sciences. PMID 33761117 DOI: 10.1007/s12539-021-00424-9   
2021 Mihai IS, Das D, Maršalkaite G, Henriksson J. Meta-Analysis of Gene Popularity: Less Than Half of Gene Citations Stem from Gene Regulatory Networks. Genes. 12. PMID 33672419 DOI: 10.3390/genes12020319   
2021 Goszczynski DE, Halstead MM, Islas-Trejo AD, Zhou H, Ross PJ. Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage. Genome Research. 31: 732-744. PMID 33722934 DOI: 10.1101/gr.267336.120   
2021 Wu B, Jiang X, Huang Y, Ying X, Zhang H, Liu B, Li Z, Qi D, Ji W, Cai X. Integrated Analysis of mRNA-mA-protein Profiles Reveals Novel Insights into the Mechanisms for Cadmium-induced Urothelial Transformation. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-23. PMID 33830842 DOI: 10.1080/1354750X.2021.1913513   
2021 Nan H, Ludlow RA, Lu M, An H. Genome-Wide Analysis of Genes and Their Response to Abiotic Stress in Rose (). Frontiers in Genetics. 12: 538733. PMID 33747030 DOI: 10.3389/fgene.2021.538733   
2021 Liu L, Yu Y, Hu LL, Dong QB, Hu F, Zhu LJ, Liang Q, Yu LL, Bao HH, Cheng XS. Potential Target Genes in the Development of Atrial Fibrillation: A Comprehensive Bioinformatics Analysis. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 27: e928366. PMID 33741890 DOI: 10.12659/MSM.928366   
2021 Hansen J, von Melchner H, Wurst W. Mutant non-coding RNA resource in mouse embryonic stem cells. Disease Models & Mechanisms. 14. PMID 33729986 DOI: 10.1242/dmm.047803   
2021 Chen L, Wu F, Zhang J. NAC and MYB Families and Lignin Biosynthesis-Related Members Identification and Expression Analysis in . Plants (Basel, Switzerland). 10. PMID 33562564 DOI: 10.3390/plants10020303   
2021 Lee JY, Song J, LeBlanc L, Davis I, Kim J, Beck S. Conserved dual-mode gene regulation programs in higher eukaryotes. Nucleic Acids Research. PMID 33621342 DOI: 10.1093/nar/gkab108   
2021 Tian J, Wang J, Roeder K. ESCO: single cell expression simulation incorporating gene co-expression. Bioinformatics (Oxford, England). PMID 33624750 DOI: 10.1093/bioinformatics/btab116   
2021 Qiao Y, Zhang B, Liu Y. Identification of Potential Diagnostic Gene Targets for Pediatric Sepsis Based on Bioinformatics and Machine Learning. Frontiers in Pediatrics. 9: 576585. PMID 33748037 DOI: 10.3389/fped.2021.576585   
2021 Xu S, Hong L. Navigating flower development with a new atlas. Developmental Cell. 56: 399-400. PMID 33621487 DOI: 10.1016/j.devcel.2021.02.001   
2021 Zhang R, Atwal GS, Lim WK. Noise regularization removes correlation artifacts in single-cell RNA-seq data preprocessing. Patterns (New York, N.Y.). 2: 100211. PMID 33748795 DOI: 10.1016/j.patter.2021.100211   
2021 Sánchez JA, Gil-Martinez AL, Cisterna A, García-Ruíz S, Gómez-Pascual A, Reynolds RH, Nalls M, Hardy J, Ryten M, Botía JA. Modeling multifunctionality of genes with secondary gene co-expression networks in human brain provides novel disease insights. Bioinformatics (Oxford, England). PMID 33734320 DOI: 10.1093/bioinformatics/btab175   
2021 Sun C, Zhang C, Wang X, Zhao X, Chen F, Zhang W, Hu M, Fu S, Yi B, Zhang J. Genome-Wide Identification and Characterization of the IGT Gene Family in Allotetraploid Rapeseed ( L.). Dna and Cell Biology. PMID 33600242 DOI: 10.1089/dna.2020.6227   
2021 Guo W, Zheng X, Hua L, Zheng X, Zhang Y, Sun B, Tao Z, Gao J. Screening and bioinformatical analysis of differentially expressed genes in nasopharyngeal carcinoma. Journal of Cancer. 12: 1867-1883. PMID 33753985 DOI: 10.7150/jca.48979   
2021 Meng F, Zhao H, Zhu B, Zhang T, Yang M, Li Y, Han Y, Jiang J. Genomic Editing of Intronic Enhancers Unveils Their Role in Fine-Tuning Tissue-Specific Gene Expression in Arabidopsis thaliana. The Plant Cell. PMID 33764459 DOI: 10.1093/plcell/koab093   
2021 Luo Y, Wang J, Lu W, Liu Y, Huang Y, Luo D. Identification of a disease-specific gene expression profile of children with acute asthma by weighted gene co-expression network analysis. Genes & Genetic Systems. PMID 33642437 DOI: 10.1266/ggs.20-00031   
2021 Luo Y, Wang J, Lu W, Liu Y, Huang Y, Luo D. Identification of a disease-specific gene expression profile of children with acute asthma by weighted gene co-expression network analysis. Genes & Genetic Systems. PMID 33642437 DOI: 10.1266/ggs.20-00031   
2021 Pham TH, Qiu Y, Zeng J, Xie L, Zhang P. A deep learning framework for high-throughput mechanism-driven phenotype compound screening and its application to COVID-19 drug repurposing. Nature Machine Intelligence. 3: 247-257. PMID 33796820 DOI: 10.1038/s42256-020-00285-9   
2021 Milne L, Bayer M, Rapazote-Flores P, Mayer CD, Waugh R, Simpson CG. EORNA, a barley gene and transcript abundance database. Scientific Data. 8: 90. PMID 33767193 DOI: 10.1038/s41597-021-00872-4   
2021 Abbas F, Ke Y, Zhou Y, Yu Y, Waseem M, Ashraf U, Wang C, Wang X, Li X, Yue Y, Yu R, Fan Y. Genome-Wide Analysis Reveals the Potential Role of MYB Transcription Factors in Floral Scent Formation in . Frontiers in Plant Science. 12: 623742. PMID 33719296 DOI: 10.3389/fpls.2021.623742   
2021 Yin W, Mendoza L, Monzon-Sandoval J, Urrutia AO, Gutierrez H. Emergence of co-expression in gene regulatory networks. Plos One. 16: e0247671. PMID 33793561 DOI: 10.1371/journal.pone.0247671   
2021 Kwik M, Hainzl S, Oppelt J, Tichy B, Koller U, Bernardinelli E, Steiner M, Zara G, Nofziger C, Weis S, Paulmichl M, Dossena S, Patsch W, Soyal SM. Selective Activation of CNS and Reference Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases. International Journal of Molecular Sciences. 22. PMID 33804860 DOI: 10.3390/ijms22073296   
2021 Zhao W, Liu Y, Li L, Meng H, Yang Y, Dong Z, Wang L, Wu G. Genome-Wide Identification and Characterization of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in Red Walnut ( L.). Frontiers in Genetics. 12: 632509. PMID 33719341 DOI: 10.3389/fgene.2021.632509   
2021 Crespo NE, Torres-Bracero A, Renta JY, Desnick RJ, Cadilla CL. Expression Profiling Identifies TWIST2 Target Genes in Setleis Syndrome Patient Fibroblast and Lymphoblast Cells. International Journal of Environmental Research and Public Health. 18. PMID 33669496 DOI: 10.3390/ijerph18041997   
2021 Shehzad M, Zhou Z, Ditta A, Khan M, Cai X, Xu Y, Maqbool A, Khalofah A, Shaban M, Naeem M, Ansari MJ, Wang K, Liu F. Identification and characterization of genes related to salt stress tolerance within segregation distortion regions of genetic map in F2 population of upland cotton. Plos One. 16: e0247593. PMID 33770112 DOI: 10.1371/journal.pone.0247593   
2021 Zhang ZQ, Wu WW, Chen JD, Zhang GY, Lin JY, Wu YK, Zhang Y, Su YA, Li JT, Si TM. Weighted Gene Coexpression Network Analysis Reveals Essential Genes and Pathways in Bipolar Disorder. Frontiers in Psychiatry. 12: 553305. PMID 33815158 DOI: 10.3389/fpsyt.2021.553305   
2021 Wang L, Jia G, Jiang X, Cao S, Chen ZJ, Song Q. Altered chromatin architecture and gene expression during polyploidization and domestication of soybean. The Plant Cell. PMID 33730165 DOI: 10.1093/plcell/koab081   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Saha S, Bandopadhyay S, Ghosh A. Identifying the degree of genetic interactions using Restricted Boltzmann Machine-A study on colorectal cancer. Iet Systems Biology. 15: 26-39. PMID 33590963 DOI: 10.1049/syb2.12009   
2021 Zhu H, Deng M, Yang Z, Mao L, Jiang S, Yue Y, Zhao K. Two Tomato () Thaumatin-like Protein Genes Confer Enhanced Resistance to Late Blight (). Phytopathology. PMID 33616418 DOI: 10.1094/PHYTO-06-20-0237-R   
2021 Garcia-Lozano M, Natarajan P, Levi A, Katam R, Lopez-Ortiz C, Nimmakayala P, Reddy UK. Altered chromatin conformation and transcriptional regulation in watermelon following genome doubling. The Plant Journal : For Cell and Molecular Biology. PMID 33788333 DOI: 10.1111/tpj.15256   
2021 Geffroy S, Lechat MM, Le Gac M, Rovillon GA, Marie D, Bigeard E, Malo F, Amzil Z, Guillou L, Caruana AMN. From the Gene to Saxitoxin Production: What Controls the Variability Among and Strains? Frontiers in Microbiology. 12: 613199. PMID 33717003 DOI: 10.3389/fmicb.2021.613199   
2021 Xie J, Deng Z, Alahdal M, Liu J, Zhao Z, Chen X, Wang G, Hu X, Duan L, Wang D, Li W. Screening and verification of hub genes involved in osteoarthritis using bioinformatics. Experimental and Therapeutic Medicine. 21: 330. PMID 33732303 DOI: 10.3892/etm.2021.9761   
2021 Zuo D, Li C, Liu T, Yue M, Zhang J, Ning G. Construction and validation of a metabolic risk model predicting prognosis of colon cancer. Scientific Reports. 11: 6837. PMID 33767290 DOI: 10.1038/s41598-021-86286-z   
2021 Hu D, Jiang J, Lin Z, Zhang C, Moonasar N, Qian S. Identification of key genes and pathways in scleral extracellular matrix remodeling in glaucoma: Potential therapeutic agents discovered using bioinformatics analysis. International Journal of Medical Sciences. 18: 1554-1565. PMID 33746571 DOI: 10.7150/ijms.52846   
2021 Haellman V, Saxena P, Jiang Y, Fussenegger M. Rational design and optimization of synthetic gene switches for controlling cell-fate decisions in pluripotent stem cells. Metabolic Engineering. 65: 99-110. PMID 33744461 DOI: 10.1016/j.ymben.2021.03.009   
2021 Schyman P, Xu Z, Desai V, Wallqvist A. TOXPANEL: A Gene-Set Analysis Tool to Assess Liver and Kidney Injuries. Frontiers in Pharmacology. 12: 601511. PMID 33633572 DOI: 10.3389/fphar.2021.601511   
2021 Mittleman BE, Pott S, Warland S, Barr K, Cuevas C, Gilad Y. Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees. Elife. 10. PMID 33595436 DOI: 10.7554/eLife.62548   
2021 Brown JC. Role of Gene Length in Control of Human Gene Expression: Chromosome-Specific and Tissue-Specific Effects. International Journal of Genomics. 2021: 8902428. PMID 33688492 DOI: 10.1155/2021/8902428   
2021 Li R, Lin CY, Guo WF, Akutsu T. Weighted minimum feedback vertex sets and implementation in human cancer genes detection. Bmc Bioinformatics. 22: 143. PMID 33752597 DOI: 10.1186/s12859-021-04062-2   
2021 Gordon MR, Zhu J, Qu V, Li R. A case of convergent-gene interference in the budding yeast knockout library causing chromosome instability. G3 (Bethesda, Md.). PMID 33724427 DOI: 10.1093/g3journal/jkab084   
2021 Tian L, Chen Y, Wang DW, Liu XH. Validation of Reference Genes via qRT-PCR in Multiple Conditions in Brandt's Voles, . Animals : An Open Access Journal From Mdpi. 11. PMID 33801053 DOI: 10.3390/ani11030897   
2021 Christensen KA, Le Luyer J, Chan MTT, Rondeau EB, Koop BF, Bernatchez L, Devlin RH. Assessing the effects of genotype-by-environment interaction on epigenetic, transcriptomic, and phenotypic response in a Pacific salmon. G3 (Bethesda, Md.). 11. PMID 33712817 DOI: 10.1093/g3journal/jkab021