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Yang Zhang - Publications

Affiliations: 
2015-2017 St. Jude Children's Research Hospital, San Francisco, CA, United States 
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Meng X, Liang Z, Dai X, Zhang Y, Mahboub S, Ngu DW, Roston RL, Schnable JC. Predicting transcriptional responses to cold stress across plant species. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33658387 DOI: 10.1073/pnas.2026330118  0.694
2021 Lai X, Bendix C, Zhang Y, Schnable JC, Harmon FG. 72-h diurnal RNA-seq analysis of fully expanded third leaves from maize, sorghum, and foxtail millet at 3-h resolution. Bmc Research Notes. 14: 24. PMID 33446233 DOI: 10.1186/s13104-020-05431-5  0.554
2020 Lai X, Bendix C, Yan L, Zhang Y, Schnable JC, Harmon FG. Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs. Bmc Genomics. 21: 428. PMID 32586356 DOI: 10.1186/S12864-020-06824-3  0.591
2019 Zhang Y, Hyle J, Wright S, Shao Y, Zhao X, Zhang H, Li C. A -element within the locus mediates repression of expression via long-range chromatin interactions. Proceedings of the National Academy of Sciences of the United States of America. PMID 31818950 DOI: 10.1073/Pnas.1909720116  0.303
2019 Hyle J, Zhang Y, Wright S, Xu B, Shao Y, Easton J, Tian L, Feng R, Xu P, Li C. Acute depletion of CTCF directly affects MYC regulation through loss of enhancer-promoter looping. Nucleic Acids Research. PMID 31127282 DOI: 10.1093/Nar/Gkz462  0.332
2019 Yan L, Kenchanmane Raju SK, Lai X, Zhang Y, Dai X, Rodriguez O, Mahboub S, Roston RL, Schnable JC. Parallels between natural selection in the cold-adapted crop-wild relative Tripsacum dactyloides and artificial selection in temperate adapted maize. The Plant Journal : For Cell and Molecular Biology. PMID 31069858 DOI: 10.1111/Tpj.14376  0.675
2018 Liang Z, Gupta SK, Yeh CT, Zhang Y, Ngu DW, Kumar R, Patil HT, Mungra KD, Yadav DV, Rathore A, Srivastava RK, Gupta R, Yang J, Varshney RK, Schnable PS, et al. Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3 (Bethesda, Md.). PMID 29794163 DOI: 10.1534/G3.118.200242  0.669
2018 Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses. Scientific Reports. 8: 7120. PMID 29720618 DOI: 10.1038/S41598-018-25620-4  0.549
2018 Zhang Y, Giuliani R, Zhang Y, Zhang Y, Araujo WL, Wang B, Liu P, Sun Q, Cousins A, Edwards G, Fernie A, Brutnell TP, Li P. Characterization of maize leaf Pyruvate Orthophosphate Dikinase using high throughput sequencing. Journal of Integrative Plant Biology. PMID 29664234 DOI: 10.1111/Jipb.12656  0.304
2017 Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. Scientific Reports. 7: 13528. PMID 29051622 DOI: 10.1038/S41598-017-13236-Z  0.6
2017 Zhang Y, Ngu DW, Carvalho D, Liang Z, Qiu Y, Roston R, Schnable J. Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize. The Plant Cell. PMID 28733421 DOI: 10.1105/Tpc.17.00354  0.698
2016 Ding Z, Zhang Y, Xiao Y, Liu F, Wang M, Zhu X, Liu P, Sun Q, Wang W, Peng M, Brutnell T, Li P. Transcriptome response of cassava leaves under natural shade. Scientific Reports. 6: 31673. PMID 27539510 DOI: 10.1038/Srep31673  0.349
2016 ZHANG Y, CHEN X, WANG H, XIA Z, LING P, WANG W. Annotation and validation of genes involved in photosynthesis and starch synthesis from a Manihot full-length cDNA library Frontiers of Agricultural Science and Engineering. 3: 308. DOI: 10.15302/J-Fase-2016113  0.326
2015 Zhang M, Rong Y, Lee MK, Zhang Y, Stelly DM, Zhang HB. Phylogenetic analysis of Gossypium L. using restriction fragment length polymorphism of repeated sequences. Molecular Genetics and Genomics : Mgg. PMID 25877517 DOI: 10.1007/S00438-015-1039-1  0.359
2015 Zhang Y, Ding Z, Ma F, Chauhan RD, Allen DK, Brutnell TP, Wang W, Peng M, Li P. Transcriptional response to petiole heat girdling in cassava. Scientific Reports. 5: 8414. PMID 25672661 DOI: 10.1038/Srep08414  0.304
2014 Wang W, Feng B, Xiao J, Xia Z, Zhou X, Li P, Zhang W, Wang Y, Møller BL, Zhang P, Luo MC, Xiao G, Liu J, Yang J, Chen S, ... ... Zhang Y, et al. Cassava genome from a wild ancestor to cultivated varieties. Nature Communications. 5: 5110. PMID 25300236 DOI: 10.1038/Ncomms6110  0.362
2013 Lee MK, Zhang Y, Zhang M, Goebel M, Kim HJ, Triplett BA, Stelly DM, Zhang HB. Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.). Bmc Genomics. 14: 208. PMID 23537070 DOI: 10.1186/1471-2164-14-208  0.369
2013 Zhai J, Wang Y, Sun C, Jiang S, Wang K, Zhang Y, Zhang H, Zhang M. A plant-transformation-competent BIBAC library of ginseng ( Panax ginseng C. A. Meyer) for functional genomics research and characterization of genes involved in ginsenoside biosynthesis Molecular Breeding. 31: 685-692. DOI: 10.1007/S11032-012-9826-4  0.375
2012 Zhang HB, Scheuring CF, Zhang M, Zhang Y, Wu CC, Dong JJ, Li Y. Construction of BIBAC and BAC libraries from a variety of organisms for advanced genomics research. Nature Protocols. 7: 479-99. PMID 22343430 DOI: 10.1038/Nprot.2011.456  0.317
2011 Zhang X, Zhao C, Huang C, Duan H, Huan P, Liu C, Zhang X, Zhang Y, Li F, Zhang HB, Xiang J. A BAC-based physical map of Zhikong scallop (Chlamys farreri Jones et Preston). Plos One. 6: e27612. PMID 22110691 DOI: 10.1371/Journal.Pone.0027612  0.317
2011 Zhang Y, Zhang X, O'Hare TH, Payne WS, Dong JJ, Scheuring CF, Zhang M, Huang JJ, Lee MK, Delany ME, Zhang HB, Dodgson JB. A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes. Bmc Genomics. 12: 447. PMID 21906286 DOI: 10.1186/1471-2164-12-447  0.325
2010 Huan P, Zhang X, Li F, Zhang Y, Zhao C, Xiang J. Chromosomal localization and molecular marker development of the lipopolysaccharide and beta-1,3-glucan binding protein gene in the Zhikong scallop Chlamys farreri (Jones et Preston) (Pectinoida, Pectinidae) Genetics and Molecular Biology. 33: 36-43. PMID 21637602 DOI: 10.1590/S1415-47572010005000015  0.335
2010 Zhang X, Scheuring CF, Zhang M, Dong JJ, Zhang Y, Huang JJ, Lee MK, Abbo S, Sherman A, Shtienberg D, Chen W, Muehlbauer F, Zhang HB. A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L. Bmc Genomics. 11: 501. PMID 20849583 DOI: 10.1186/1471-2164-11-501  0.305
2010 Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg Le Ann, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, ... ... Zhang Y, et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. Plos Biology. 8. PMID 20838655 DOI: 10.1371/Journal.Pbio.1000475  0.4
2010 Zhang X, Zhang Y, Scheuring C, Zhang H, Huan P, Wang B, Liu C, Li F, Liu B, Xiang J. Construction and characterization of a bacterial artificial chromosome (BAC) library of Pacific white shrimp, Litopenaeus vannamei. Marine Biotechnology. 12: 141-149. PMID 19585170 DOI: 10.1007/S10126-009-9209-Y  0.382
2009 Huan P, Zhang XJ, Zhang XJ, Li FH, Zhang Y, Zhao C, Liu BZ, Xiang JH. [Chromosomal localization and development of SNP markers of a serine protease gene in Farrer's scallop (Chlamys farreri)]. Yi Chuan = Hereditas / Zhongguo Yi Chuan Xue Hui Bian Ji. 31: 1241-7. PMID 20042392 DOI: 10.3724/Sp.J.1005.2009.01241  0.344
2009 Larson SR, Scheuring C, Kaur P, Cliften PF, Mott IW, Bushman BS, Dong JJ, Zhang Y, Zhang X, Kiani M, Wu YH, Liu YH, Zhang HB, Chatterton NJ, Wang RRC. BAC library development for allotetraploid Leymus (Triticeae) wildryes enable comparative genetic analysis of lax-barrenstalk1 orthogene sequences and growth habit QTLs Plant Science. 177: 427-438. DOI: 10.1016/J.Plantsci.2009.07.006  0.351
2008 Zhang Y, Zhang X, Scheuring CF, Zhang H, Huan P, Li F, Xiang J. Construction and characterization of two bacterial artificial chromosome libraries of Zhikong scallop, Chlamys farreri Jones et Preston, and identification of BAC clones containing the genes involved in its innate immune system. Marine Biotechnology. 10: 358-365. PMID 18283517 DOI: 10.1007/S10126-007-9071-8  0.368
2008 Zhang Y, Zhang X, Scheuring CF, Zhang H, Li F, Xiang J. Construction of bacterial artificial chromosome libraries for Zhikong Scallop Chlamys farreri Chinese Journal of Oceanology and Limnology. 26: 215-218. DOI: 10.1007/S00343-008-0215-0  0.316
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