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Yongxin Zhao - Publications

Affiliations: 
Chemistry University of Alberta, Edmonton, Alberta, Canada 
Area:
Protein Engineering, Microfluidic, Fluorescent protein, Optogenetic
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Valdes PA, Yu CJ, Aronson J, Ghosh D, Zhao Y, An B, Bernstock JD, Bhere D, Felicella MM, Viapiano MS, Shah K, Chiocca EA, Boyden ES. Improved immunostaining of nanostructures and cells in human brain specimens through expansion-mediated protein decrowding. Science Translational Medicine. 16: eabo0049. PMID 38295184 DOI: 10.1126/scitranslmed.abo0049  0.529
2022 Abdelfattah AS, Ahuja S, Akkin T, Allu SR, Brake J, Boas DA, Buckley EM, Campbell RE, Chen AI, Cheng X, Čižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, ... ... Zhao Y, et al. Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics. 9: 013001. PMID 35493335 DOI: 10.1117/1.NPh.9.S1.013001  0.403
2020 Klimas A, Zhao Y. Expansion Microscopy: Toward Nanoscale Imaging of a Diverse Range of Biomolecules. Acs Nano. PMID 32628828 DOI: 10.1021/Acsnano.0C04374  0.379
2020 Bucur O, Fu F, Calderon M, Mylvaganam GH, Ly NL, Day J, Watkin S, Walker BD, Boyden ES, Zhao Y. Nanoscale imaging of clinical specimens using conventional and rapid-expansion pathology. Nature Protocols. PMID 32238952 DOI: 10.1038/S41596-020-0300-1  0.548
2019 Klimas A, Gallagher B, Zhao Y. Basics of Expansion Microscopy. Current Protocols in Cytometry. 91: e67. PMID 31763769 DOI: 10.1002/Cpcy.67  0.355
2019 Zhao Y, Zhang W, Zhao Y, Campbell RE, Harrison DJ. A single-phase flow microfluidic cell sorter for multiparameter screening to assist the directed evolution of Ca sensors. Lab On a Chip. PMID 31641712 DOI: 10.1039/C9Lc00779B  0.643
2019 Klimas A, Bucur O, Njeri B, Zhao Y. Nanoscopic Imaging of Human Tissue Sections via Physical and Isotropic Expansion. Journal of Visualized Experiments : Jove. PMID 31609342 DOI: 10.3791/60195  0.321
2019 Adam Y, Kim JJ, Lou S, Zhao Y, Xie ME, Brinks D, Wu H, Mostajo-Radji MA, Kheifets S, Parot V, Chettih S, Williams KJ, Gmeiner B, Farhi SL, Madisen L, et al. Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics. Nature. PMID 31043747 DOI: 10.1038/S41586-019-1166-7  0.655
2019 Gao R, Asano SM, Upadhyayula S, Pisarev I, Milkie DE, Liu TL, Singh V, Graves A, Huynh GH, Zhao Y, Bogovic J, Colonell J, Ott CM, Zugates C, Tappan S, et al. Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution. Science (New York, N.Y.). 363. PMID 30655415 DOI: 10.1126/Science.Aau8302  0.546
2019 Wassie AT, Zhao Y, Boyden ES. Expansion microscopy: principles and uses in biological research. Nature Methods. 16: 33-41. PMID 30573813 DOI: 10.1038/S41592-018-0219-4  0.561
2018 Bucur O, Zhao Y. Nanoscale Imaging of Kidney Glomeruli Using Expansion Pathology. Frontiers in Medicine. 5: 322. PMID 30519560 DOI: 10.3389/Fmed.2018.00322  0.352
2018 Zhao Y, Bushey D, Zhao Y, Schreiter ER, Harrison DJ, Wong AM, Campbell RE. Inverse-response Ca indicators for optogenetic visualization of neuronal inhibition. Scientific Reports. 8: 11758. PMID 30082904 DOI: 10.1038/S41598-018-30080-X  0.642
2017 Zhao Y, Bucur O, Irshad H, Chen F, Weins A, Stancu AL, Oh EY, DiStasio M, Torous V, Glass B, Stillman IE, Schnitt SJ, Beck AH, Boyden ES. Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy. Nature Biotechnology. PMID 28714966 DOI: 10.1038/Nbt.3892  0.598
2017 Tang L, Wang Y, Liu W, Zhao Y, Campbell RE, Fang C. Illuminating Photochemistry of an Excitation Ratiometric Fluorescent Protein Calcium Biosensor. The Journal of Physical Chemistry. B. PMID 28326779 DOI: 10.1021/Acs.Jpcb.7B01269  0.569
2016 Tillberg PW, Chen F, Piatkevich KD, Zhao Y, Yu CJ, English BP, Gao L, Martorell A, Suk HJ, Yoshida F, DeGennaro EM, Roossien DH, Gong G, Seneviratne U, Tannenbaum SR, et al. Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies. Nature Biotechnology. PMID 27376584 DOI: 10.1038/Nbt.3625  0.772
2016 Abdelfattah AS, Farhi SL, Zhao Y, Brinks D, Zou P, Ruangkittisakul A, Platisa J, Pieribone VA, Ballanyi K, Cohen AE, Campbell RE. A Bright and Fast Red Fluorescent Protein Voltage Indicator That Reports Neuronal Activity in Organotypic Brain Slices. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 2458-72. PMID 26911693 DOI: 10.1523/Jneurosci.3484-15.2016  0.69
2016 Liu Z, Zhao Y, Wang X, Zhang H, Cui Y, Diao Y, Xiu J, Sun X, Jiang G. Low carotid artery wall shear stress is independently associated with brain white-matter hyperintensities and cognitive impairment in older patients. Atherosclerosis. 247: 78-86. PMID 26868512 DOI: 10.1016/j.atherosclerosis.2016.02.003  0.361
2016 Bucur O, Zhao Y, Boyden E, Beck AH. Abstract 4229: Physical expansion of tissue microarrays for high-resolution imaging of normal and cancer samples with conventional microscopy Cancer Research. 76: 4229-4229. DOI: 10.1158/1538-7445.Am2016-4229  0.543
2015 Liu Z, Zhao Y, Zhang H, Chai Q, Cui Y, Diao Y, Xiu J, Sun X, Jiang G. Excessive variability in systolic blood pressure that is self-measured at home exacerbates the progression of brain white matter lesions and cognitive impairment in the oldest old. Hypertension Research : Official Journal of the Japanese Society of Hypertension. PMID 26631851 DOI: 10.1038/hr.2015.135  0.367
2015 Hatahet F, Blazyk JL, Martineau E, Mandela E, Zhao Y, Campbell RE, Beckwith J, Boyd D. Altered Escherichia coli membrane protein assembly machinery allows proper membrane assembly of eukaryotic protein vitamin K epoxide reductase. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598701 DOI: 10.1073/Pnas.1521260112  0.482
2015 Tang L, Liu W, Wang Y, Zhao Y, Oscar BG, Campbell RE, Fang C. Unraveling ultrafast photoinduced proton transfer dynamics in a fluorescent protein biosensor for Ca(2+) imaging. Chemistry (Weinheim An Der Bergstrasse, Germany). 21: 6481-90. PMID 25761197 DOI: 10.1002/Chem.201500491  0.565
2015 Albrecht T, Zhao Y, Nguyen TH, Campbell RE, Johnson JD. Fluorescent biosensors illuminate calcium levels within defined beta-cell endosome subpopulations. Cell Calcium. 57: 263-74. PMID 25682167 DOI: 10.1016/J.Ceca.2015.01.008  0.617
2015 Wang Y, Tang L, Liu W, Zhao Y, Oscar BG, Campbell RE, Fang C. Excited state structural events of a dual-emission fluorescent protein biosensor for Ca²⁺ imaging studied by femtosecond stimulated Raman spectroscopy. The Journal of Physical Chemistry. B. 119: 2204-18. PMID 25226022 DOI: 10.1021/Jp505698Z  0.59
2014 Zou P, Zhao Y, Douglass AD, Hochbaum DR, Brinks D, Werley CA, Harrison DJ, Campbell RE, Cohen AE. Bright and fast multicoloured voltage reporters via electrochromic FRET. Nature Communications. 5: 4625. PMID 25118186 DOI: 10.1038/Ncomms5625  0.753
2014 Oscar BG, Liu W, Zhao Y, Tang L, Wang Y, Campbell RE, Fang C. Excited-state structural dynamics of a dual-emission calmodulin-green fluorescent protein sensor for calcium ion imaging. Proceedings of the National Academy of Sciences of the United States of America. 111: 10191-6. PMID 24987121 DOI: 10.1073/Pnas.1403712111  0.665
2014 Hochbaum DR, Zhao Y, Farhi SL, Klapoetke N, Werley CA, Kapoor V, Zou P, Kralj JM, Maclaurin D, Smedemark-Margulies N, Saulnier JL, Boulting GL, Straub C, Cho YK, Melkonian M, et al. All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins. Nature Methods. 11: 825-33. PMID 24952910 DOI: 10.1038/Nmeth.3000  0.722
2014 Zhao Y, Abdelfattah AS, Zhao Y, Ruangkittisakul A, Ballanyi K, Campbell RE, Harrison DJ. Microfluidic cell sorter-aided directed evolution of a protein-based calcium ion indicator with an inverted fluorescent response. Integrative Biology : Quantitative Biosciences From Nano to Macro. 6: 714-25. PMID 24840546 DOI: 10.1039/C4Ib00039K  0.724
2014 Tewson P, Westenberg M, Zhao Y, Campbell RE, Quinn AM, Hughes TE. Correction: Simultaneous detection of Ca2+ and diacylglycerol signaling in living cells (PloS ONE) Plos One. 9. DOI: 10.1371/Annotation/108Decc5-1A4A-4Fa7-A867-D6Cfaea8F471  0.486
2014 Abdelfattah AS, Platisa J, Zhao Y, Pieribone VA, Campbell RE. Development of a Red Genetically-Encoded Voltage Indicator and its use with Channelrhodopsin for All-Optical Electrophysiology Biophysical Journal. 106: 629a-630a. DOI: 10.1016/J.Bpj.2013.11.3482  0.574
2014 Zhao Y, Hochbaum D, Harrison DJ, Cohen AE, Campbell RE. A Comprehensive Live Cell Screening Approach for Developing Improved Microbial Rhodopsin-Based Voltage Biosensors Biophysical Journal. 106: 415a. DOI: 10.1016/J.Bpj.2013.11.2334  0.728
2013 Wu J, Liu L, Matsuda T, Zhao Y, Rebane A, Drobizhev M, Chang YF, Araki S, Arai Y, March K, Hughes TE, Sagou K, Miyata T, Nagai T, Li WH, et al. Improved orange and red Ca²± indicators and photophysical considerations for optogenetic applications. Acs Chemical Neuroscience. 4: 963-72. PMID 23452507 DOI: 10.1021/Cn400012B  0.588
2013 Alford SC, Wu J, Zhao Y, Campbell RE, Knöpfel T. Optogenetic reporters. Biology of the Cell / Under the Auspices of the European Cell Biology Organization. 105: 14-29. PMID 23126299 DOI: 10.1111/boc.201200054  0.755
2013 Zhao Y, Hoi H, Campbell RE, Harrison DJ. Microfluidic cell sorter aided directed evolution of an improved fluorescent protein-based calcium ion indicator 17th International Conference On Miniaturized Systems For Chemistry and Life Sciences, Microtas 2013. 2: 1006-1008.  0.721
2012 Tewson P, Westenberg M, Zhao Y, Campbell RE, Quinn AM, Hughes TE. Simultaneous detection of Ca2+ and diacylglycerol signaling in living cells. Plos One. 7: e42791. PMID 22912738 DOI: 10.1371/Journal.Pone.0042791  0.649
2012 Zhao Y, Hoi H, Campbell RE, Jed Harrison D. Microfluidic cell sorter aided live cell screening for improved fluorescent protein Proceedings of the 16th International Conference On Miniaturized Systems For Chemistry and Life Sciences, Microtas 2012. 1120-1122.  0.692
2011 Zhao Y, Araki S, Wu J, Teramoto T, Chang YF, Nakano M, Abdelfattah AS, Fujiwara M, Ishihara T, Nagai T, Campbell RE. An expanded palette of genetically encoded Ca²⁺ indicators. Science (New York, N.Y.). 333: 1888-91. PMID 21903779 DOI: 10.1126/Science.1208592  0.668
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