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Alan Hodgkinson - Publications

Affiliations: 
University of Montreal (Canada) 
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Carbajosa G, Ali AT, Hodgkinson A. Identification of human mitochondrial RNA cleavage sites and candidate RNA processing factors. Bmc Biology. 20: 168. PMID 35869520 DOI: 10.1186/s12915-022-01373-5  0.786
2022 Saukkonen A, Kilpinen H, Hodgkinson A. Highly accurate quantification of allelic gene expression for population and disease genetics. Genome Research. PMID 35794008 DOI: 10.1101/gr.276296.121  0.405
2022 Rodriguez-Algarra F, Seaborne RAE, Danson AF, Yildizoglu S, Yoshikawa H, Law PP, Ahmad Z, Maudsley VA, Brew A, Holmes N, Ochôa M, Hodgkinson A, Marzi SJ, Pradeepa MM, Loose M, et al. Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states. Genome Biology. 23: 54. PMID 35164830 DOI: 10.1186/s13059-022-02617-x  0.307
2021 Fairbrother-Browne A, Ali AT, Reynolds RH, Garcia-Ruiz S, Zhang D, Chen Z, Ryten M, Hodgkinson A. Mitochondrial-nuclear cross-talk in the human brain is modulated by cell type and perturbed in neurodegenerative disease. Communications Biology. 4: 1262. PMID 34737414 DOI: 10.1038/s42003-021-02792-w  0.784
2020 Wilson BC, Boehme L, Annibali A, Hodgkinson A, Carroll TS, Oakey RJ, Seitan VC. Intellectual disability-associated factor Zbtb11 cooperates with NRF-2/GABP to control mitochondrial function. Nature Communications. 11: 5469. PMID 33122634 DOI: 10.1038/s41467-020-19205-x  0.394
2020 Ali AT, Idaghdour Y, Hodgkinson A. Analysis of mitochondrial m1A/G RNA modification reveals links to nuclear genetic variants and associated disease processes. Communications Biology. 3: 147. PMID 32221480 DOI: 10.1038/s42003-020-0879-3  0.783
2019 Ali AT, Boehme L, Carbajosa G, Seitan VC, Small KS, Hodgkinson A. Nuclear genetic regulation of the human mitochondrial transcriptome. Elife. 8. PMID 30775970 DOI: 10.7554/Elife.41927  0.811
2019 Ali AT, Boehme L, Carbajosa G, Seitan VC, Small KS, Hodgkinson A. Author response: Nuclear genetic regulation of the human mitochondrial transcriptome Elife. DOI: 10.7554/Elife.41927.026  0.787
2018 Favé MJ, Lamaze FC, Soave D, Hodgkinson A, Gauvin H, Bruat V, Grenier JC, Gbeha E, Skead K, Smargiassi A, Johnson M, Idaghdour Y, Awadalla P. Gene-by-environment interactions in urban populations modulate risk phenotypes. Nature Communications. 9: 827. PMID 29511166 DOI: 10.1038/S41467-018-03202-2  0.626
2017 Peischl S, Dupanloup I, Foucal A, Jomphe M, Bruat V, Grenier JC, Gouy A, Gilbert KJ, Gbeha E, Bosshard L, Hip-Ki E, Agbessi M, Hodgkinson A, Vézina H, Awadalla P, et al. Relaxed Selection During a Recent Human Expansion. Genetics. PMID 29187508 DOI: 10.1534/Genetics.117.300551  0.683
2017 Idaghdour Y, Hodgkinson A. Integrated genomic analysis of mitochondrial RNA processing in human cancers. Genome Medicine. 9: 36. PMID 28420414 DOI: 10.1186/S13073-017-0426-0  0.682
2016 Hodgkinson A, Grenier JC, Gbeha E, Awadalla P. A haplotype-based normalization technique for the analysis and detection of allele specific expression. Bmc Bioinformatics. 17: 364. PMID 27618913 DOI: 10.1186/s12859-016-1238-8  0.603
2016 Merner ND, Mercado A, Khanna AR, Hodgkinson A, Bruat V, Awadalla P, Gamba G, Rouleau GA, Kahle KT. Gain-of-function missense variant in SLC12A2, encoding the bumetanide-sensitive NKCC1 cotransporter, identified in human schizophrenia. Journal of Psychiatric Research. 77: 22-26. PMID 26955005 DOI: 10.1016/J.Jpsychires.2016.02.016  0.651
2015 Leblond CS, Gan-Or Z, Spiegelman D, Laurent SB, Szuto A, Hodgkinson A, Dionne-Laporte A, Provencher P, de Carvalho M, Orrù S, Brunet D, Bouchard JP, Awadalla P, Dupré N, Dion PA, et al. Replication study of MATR3 in familial and sporadic amyotrophic lateral sclerosis. Neurobiology of Aging. PMID 26493020 DOI: 10.1016/J.Neurobiolaging.2015.09.013  0.629
2015 Hussin JG, Hodgkinson A, Idaghdour Y, Grenier JC, Goulet JP, Gbeha E, Hip-Ki E, Awadalla P. Recombination affects accumulation of damaging and disease-associated mutations in human populations. Nature Genetics. 47: 400-4. PMID 25685891 DOI: 10.1038/Ng.3216  0.795
2014 Kahle KT, Merner ND, Friedel P, Silayeva L, Liang B, Khanna A, Shang Y, Lachance-Touchette P, Bourassa C, Levert A, Dion PA, Walcott B, Spiegelman D, Dionne-Laporte A, Hodgkinson A, et al. Genetically encoded impairment of neuronal KCC2 cotransporter function in human idiopathic generalized epilepsy. Embo Reports. 15: 766-74. PMID 24928908 DOI: 10.15252/Embr.201438840  0.672
2014 Hodgkinson A, Idaghdour Y, Gbeha E, Grenier JC, Hip-Ki E, Bruat V, Goulet JP, de Malliard T, Awadalla P. High-resolution genomic analysis of human mitochondrial RNA sequence variation. Science (New York, N.Y.). 344: 413-5. PMID 24763589 DOI: 10.1126/Science.1251110  0.805
2013 Casals F, Hodgkinson A, Hussin J, Idaghdour Y, Bruat V, de Maillard T, Grenier JC, Grenier JC, Gbeha E, Hamdan FF, Girard S, Spinella JF, Larivière M, Saillour V, Healy J, et al. Whole-exome sequencing reveals a rapid change in the frequency of rare functional variants in a founding population of humans. Plos Genetics. 9: e1003815. PMID 24086152 DOI: 10.1371/Journal.Pgen.1003815  0.788
2013 Hodgkinson A, Casals F, Idaghdour Y, Grenier JC, Hernandez RD, Awadalla P. Selective constraint, background selection, and mutation accumulation variability within and between human populations. Bmc Genomics. 14: 495. PMID 23875710 DOI: 10.1186/1471-2164-14-495  0.796
2013 Samuels ME, Majewski J, Alirezaie N, Fernandez I, Casals F, Patey N, Decaluwe H, Gosselin I, Haddad E, Hodgkinson A, Idaghdour Y, Marchand V, Michaud JL, Rodrigue MA, Desjardins S, et al. Exome sequencing identifies mutations in the gene TTC7A in French-Canadian cases with hereditary multiple intestinal atresia. Journal of Medical Genetics. 50: 324-9. PMID 23423984 DOI: 10.1136/Jmedgenet-2012-101483  0.771
2012 Hodgkinson A, Chen Y, Eyre-Walker A. The large-scale distribution of somatic mutations in cancer genomes. Human Mutation. 33: 136-43. PMID 21953857 DOI: 10.1002/Humu.21616  0.646
2011 Hodgkinson A, Eyre-Walker A. Variation in the mutation rate across mammalian genomes. Nature Reviews. Genetics. 12: 756-66. PMID 21969038 DOI: 10.1038/Nrg3098  0.654
2010 Hodgkinson A, Eyre-Walker A. The genomic distribution and local context of coincident SNPs in human and chimpanzee. Genome Biology and Evolution. 2: 547-57. PMID 20675616 DOI: 10.1093/Gbe/Evq039  0.623
2010 Hodgkinson A, Eyre-Walker A. Human triallelic sites: evidence for a new mutational mechanism? Genetics. 184: 233-41. PMID 19884308 DOI: 10.1534/Genetics.109.110510  0.594
2009 Hodgkinson A, Ladoukakis E, Eyre-Walker A. Cryptic variation in the human mutation rate. Plos Biology. 7: e1000027. PMID 19192947 DOI: 10.1371/Journal.Pbio.1000027  0.639
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