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Shreejoy J. Tripathy, PhD - Publications

Affiliations: 
Biological Sciences Carnegie Mellon University, Pittsburgh, PA 
 University of British Columbia, Vancouver, Vancouver, BC, Canada 
Area:
Neuroinformatics
Website:
http://neuroelectro.org/
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Chameh HM, Falby M, Movahed M, Arbabi K, Rich S, Zhang L, Lefebvre J, Tripathy SJ, De Pittà M, Valiante TA. Distinctive biophysical features of human cell-types: insights from studies of neurosurgically resected brain tissue. Frontiers in Synaptic Neuroscience. 15: 1250834. PMID 37860223 DOI: 10.3389/fnsyn.2023.1250834  0.316
2023 Arbabi K, Jiang Y, Howard D, Nigam A, Inoue W, Gonzalez-Burgos G, Felsky D, Tripathy SJ. Investigating microglia-neuron crosstalk by characterizing microglial contamination in human and mouse patch-seq datasets. Iscience. 26: 107329. PMID 37520693 DOI: 10.1016/j.isci.2023.107329  0.42
2023 Kerrebijn I, Wainberg M, Zhukovsky P, Chen Y, Davie M, Felsky D, Tripathy SJ. Case-control virtual histology elucidates cell types associated with cortical thickness differences in Alzheimer's disease. Neuroimage. 276: 120177. PMID 37211192 DOI: 10.1016/j.neuroimage.2023.120177  0.325
2023 Venkatesan S, Chen T, Liu Y, Turner EE, Tripathy SJ, Lambe EK. Chrna5 and lynx prototoxins identify acetylcholine super-responder subplate neurons. Iscience. 26: 105992. PMID 36798433 DOI: 10.1016/j.isci.2023.105992  0.675
2023 Price KM, Wigg KG, Nigam A, Feng Y, Blokland K, Wilkinson M, Kerr EN, Guger SL, Lovett MW, Strug LJ, Tripathy SJ, Barr CL. Identification of brain cell types underlying genetic association with word reading and correlated traits. Molecular Psychiatry. PMID 36750735 DOI: 10.1038/s41380-023-01970-y  0.368
2022 Howard D, Chameh HM, Guet-McCreight A, Hsiao HA, Vuong M, Seo YS, Shah P, Nigam A, Chen Y, Davie M, Hay E, Valiante TA, Tripathy SJ. An in vitro whole-cell electrophysiology dataset of human cortical neurons. Gigascience. 11. PMID 36377463 DOI: 10.1093/gigascience/giac108  0.352
2022 Guet-McCreight A, Chameh HM, Mahallati S, Wishart M, Tripathy SJ, Valiante TA, Hay E. Age-dependent increased sag amplitude in human pyramidal neurons dampens baseline cortical activity. Cerebral Cortex (New York, N.Y. : 1991). PMID 36124673 DOI: 10.1093/cercor/bhac348  0.318
2022 Kim EH, Howard D, Chen Y, Tripathy SJ, French L. : A Tool to Visualize Gene Expression Across the Laminar Architecture of the Human Neocortex. Frontiers in Neuroinformatics. 16: 753770. PMID 35281717 DOI: 10.3389/fninf.2022.753770  0.662
2022 Gillespie TH, Tripathy SJ, Sy MF, Martone ME, Hill SL. The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types. Neuroinformatics. PMID 35267146 DOI: 10.1007/s12021-022-09566-7  0.427
2021 Sicherman J, Newton DF, Pavlidis P, Sibille E, Tripathy SJ. Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data. Frontiers in Molecular Neuroscience. 14: 637143. PMID 33746712 DOI: 10.3389/fnmol.2021.637143  0.582
2020 Mielnik CA, Binko MA, Chen Y, Funk AJ, Johansson EM, Intson K, Sivananthan N, Islam R, Milenkovic M, Horsfall W, Ross RA, Groc L, Salahpour A, McCullumsmith RE, Tripathy S, et al. Consequences of NMDA receptor deficiency can be rescued in the adult brain. Molecular Psychiatry. PMID 32807843 DOI: 10.1038/S41380-020-00859-4  0.602
2020 Nagy C, Maitra M, Tanti A, Suderman M, Théroux JF, Davoli MA, Perlman K, Yerko V, Wang YC, Tripathy SJ, Pavlidis P, Mechawar N, Ragoussis J, Turecki G. Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons. Nature Neuroscience. PMID 32341540 DOI: 10.1038/S41593-020-0621-Y  0.639
2020 Nagy C, Maitra M, Tanti A, Suderman M, Théroux J, Tripathy S, Pavlidis P, Mechawar N, Turecki G. Single-Cell Genomic Strategies to Understand Psychopathological Processes in Depression and Suicide Biological Psychiatry. 87: S43. DOI: 10.1016/J.Biopsych.2020.02.134  0.505
2019 Bomkamp C, Tripathy SJ, Bengtsson Gonzales C, Hjerling-Leffler J, Craig AM, Pavlidis P. Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes. Plos Computational Biology. 15: e1007113. PMID 31211786 DOI: 10.1371/Journal.Pcbi.1007113  0.681
2018 Tripathy SJ, Toker L, Bomkamp C, Mancarci BO, Belmadani M, Pavlidis P. Assessing Transcriptome Quality in Patch-Seq Datasets. Frontiers in Molecular Neuroscience. 11: 363. PMID 30349457 DOI: 10.3389/Fnmol.2018.00363  0.747
2018 Toker L, Mancarci BO, Tripathy S, Pavlidis P. Transcriptomic Evidence for Alterations in Astrocytes and Parvalbumin Interneurons in Subjects With Bipolar Disorder and Schizophrenia. Biological Psychiatry. PMID 30177255 DOI: 10.1016/J.Biopsych.2018.07.010  0.706
2017 Tebaykin D, Tripathy SJ, Binnion N, Li B, Gerkin RC, Pavlidis P. Modeling sources of inter-laboratory variability in electrophysiological properties of mammalian neurons. Journal of Neurophysiology. PMID 29357465 DOI: 10.1152/Jn.00604.2017  0.728
2017 Mancarci BO, Toker L, Tripathy SJ, Li B, Rocco B, Sibille E, Pavlidis P. Cross-Laboratory Analysis of Brain Cell Type Transcriptomes with Applications to Interpretation of Bulk Tissue Data. Eneuro. 4. PMID 29204516 DOI: 10.1523/ENEURO.0212-17.2017  0.742
2017 Tripathy SJ, Toker L, Li B, Crichlow CL, Tebaykin D, Mancarci BO, Pavlidis P. Transcriptomic correlates of neuron electrophysiological diversity. Plos Computational Biology. 13: e1005814. PMID 29069078 DOI: 10.1371/Journal.Pcbi.1005814  0.762
2015 Yu Y, Burton SD, Tripathy SJ, Urban NN. Postnatal development attunes olfactory bulb mitral cells to high frequency signaling. Journal of Neurophysiology. jn.00315.2015. PMID 26354312 DOI: 10.1152/Jn.00315.2015  0.737
2015 Wang W, Tripathy SJ, Padmanabhan K, Urban NN, Kass RE. An Empirical Model for Reliable Spiking Activity. Neural Computation. 27: 1609-23. PMID 26079749 DOI: 10.1162/Neco_A_00754  0.722
2015 Tripathy SJ, Burton SD, Geramita M, Gerkin RC, Urban NN. Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types. Journal of Neurophysiology. 113: 3474-89. PMID 25810482 DOI: 10.1152/Jn.00237.2015  0.807
2015 Mancarcı O, Toker L, Tripathy S, Pavlidis P. A comprehensive database of cell-type specific marker genes for the mammalian brain F1000research. 4. DOI: 10.7490/F1000Research.1110181.1  0.624
2015 Tebaykin D, Tripathy S, Li B, Abdollahzadeh D, Anderson K, Pavlidis P. Application of large-scale text-mining and curation for extracting neuronal electrophysiology data F1000research. 4. DOI: 10.7490/F1000Research.1110179.1  0.59
2015 Tripathy SJ, Tebaykin D, Li B, Marcarci O, Toker L, Pavlidis P. Large-scale analysis of brain-wide electrophysiological diversity reveals novel characterization of mammalian neuron types Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-O4  0.814
2014 Tripathy SJ, Savitskaya J, Burton SD, Urban NN, Gerkin RC. NeuroElectro: a window to the world's neuron electrophysiology data. Frontiers in Neuroinformatics. 8: 40. PMID 24808858 DOI: 10.3389/Fninf.2014.00040  0.796
2013 Gerkin RC, Tripathy SJ, Urban NN. Origins of correlated spiking in the mammalian olfactory bulb. Proceedings of the National Academy of Sciences of the United States of America. 110: 17083-8. PMID 24082089 DOI: 10.1073/Pnas.1303830110  0.723
2013 Tripathy SJ, Padmanabhan K, Gerkin RC, Urban NN. Intermediate intrinsic diversity enhances neural population coding. Proceedings of the National Academy of Sciences of the United States of America. 110: 8248-53. PMID 23630284 DOI: 10.1073/Pnas.1221214110  0.785
2013 De Waard A, Alder J, Burton SD, Gerkin RC, Harviston M, Marques D, Tripathy SJ, Urban NN. Creating an Urban Legend: A System for Electrophysiology Data Management and Exploration Aaai Fall Symposium - Technical Report. 23-27.  0.721
2012 Urban N, Tripathy S. Neuroscience: Circuits drive cell diversity. Nature. 488: 289-90. PMID 22895331 DOI: 10.1038/488289A  0.701
2010 Carr JA, Lustgarten J, Ahmed N, Bergfeld N, Bulin SE, Shoukfeh O, Tripathy S. The organization of CRF neuronal pathways in toads: Evidence that retinal afferents do not contribute significantly to tectal CRF content. Brain, Behavior and Evolution. 76: 71-86. PMID 20926857 DOI: 10.1159/000319555  0.385
2010 Tripathy SJ, Padmanabhan K, Urban NN. A practical demonstration of the computational benefits of biophysical diversity among neurons Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-P164  0.732
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