Feng Zhang - Related publications

National Institutes of Health, Bethesda, MD 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Monakhova MV, Milakina MA, Savitskaia VY, Romanova EA, Rao DN, Kubareva EA. [MutL Protein from the Neisseria gonorrhoeae Mismatch Repair System: Interaction with ATP and DNA]. Molekuliarnaia Biologiia. 55: 289-304. PMID 33871442 DOI: 10.31857/S0026898421020117   
2021 Wickhorst PJ, Ihmels H. Berberrubine Phosphate: A Selective Fluorescent Probe for Quadruplex DNA. Molecules (Basel, Switzerland). 26. PMID 33924894 DOI: 10.3390/molecules26092566   
2021 Wickhorst PJ, Ihmels H. Selective, pH-Dependent Colorimetric and Fluorimetric Detection of Quadruplex DNA with 4-Dimethylamino(phenyl)-Substituted Berberine Derivatives. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 33855748 DOI: 10.1002/chem.202100297   
2021 Ujaoney AK, Padwal MK, Basu B. An Interaction Network of DNA-Repair Proteins: A Snapshot at Double Strand Break Repair in . Journal of Proteome Research. PMID 33929844 DOI: 10.1021/acs.jproteome.1c00078   
2021 Petruseva I, Naumenko N, Kuper J, Anarbaev R, Kappenberger J, Kisker C, Lavrik O. The Interaction Efficiency of XPD-p44 With Bulky DNA Damages Depends on the Structure of the Damage. Frontiers in Cell and Developmental Biology. 9: 617160. PMID 33777931 DOI: 10.3389/fcell.2021.617160   
2021 Duan B, Fu D, Zhang C, Ding P, Dong X, Xia B. Selective Nonmethylated CpG DNA Recognition Mechanism of Cysteine Clamp Domains. Journal of the American Chemical Society. PMID 33983734 DOI: 10.1021/jacs.1c00599   
2021 Begum NA, Haque F, Stanlie A, Husain A, Mondal S, Nakata M, Taniguchi T, Taniguchi H, Honjo T. Phf5a regulates DNA repair in class switch recombination via p400 and histone H2A variant deposition. The Embo Journal. e106393. PMID 33938017 DOI: 10.15252/embj.2020106393   
2021 Jacinto JP, Penas D, Guerra JPL, Almeida AV, Jones NC, Hoffmann SV, Tavares P, Pereira AS. Dps-DNA interaction in Marinobacter hydrocarbonoclasticus protein: effect of a single-charge alteration. European Biophysics Journal : Ebj. PMID 33900431 DOI: 10.1007/s00249-021-01538-0   
2021 Hu Y, Lacroix B, Citovsky V. Modulation of plant DNA damage response gene expression during Agrobacterium infection. Biochemical and Biophysical Research Communications. 554: 7-12. PMID 33774281 DOI: 10.1016/j.bbrc.2021.03.044   
2021 Park IS. The Nuclear DNA Content Determination of 31 Endemic Freshwater Fishes in Korea. Development & Reproduction. 25: 25-32. PMID 33977172 DOI: 10.12717/DR.2021.25.1.25   
2021 Kava HW, Leung WY, Galea AM, Murray V. The DNA binding properties of 9-aminoacridine carboxamide Pt complexes. Bioorganic & Medicinal Chemistry. 40: 116191. PMID 33965841 DOI: 10.1016/j.bmc.2021.116191   
2021 Harris CM, Zamperoni KE, Sernoskie SC, Chow NSM, Massey TE. Effects of in vivo treatment of mice with sulforaphane on repair of DNA pyridyloxylbutylation. Toxicology. 152753. PMID 33741493 DOI: 10.1016/j.tox.2021.152753   
2021 Mustafa M, Ali A, Siddiqui SA, Mir AR, Kausar T, Nayeem SM, Abidi M, Habib S. Biophysical characterization of structural and conformational changes in methylmethane sulfonate modified DNA leading to the frizzled backbone structure and strand breaks in DNA. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 33719845 DOI: 10.1080/07391102.2021.1899051   
2021 Stracy M, Schweizer J, Sherratt DJ, Kapanidis AN, Uphoff S, Lesterlin C. Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins. Molecular Cell. PMID 33621478 DOI: 10.1016/j.molcel.2021.01.039   
2021 Myers KS, Place M, Kominek J, Noguera DR, Donohue TJ. Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs. Microbiology Resource Announcements. 10. PMID 33858925 DOI: 10.1128/MRA.00160-21   
2021 Sui J, Gandotra N, Xie P, Lin Z, Scharfe C, Javanmard M. Multi-frequency impedance sensing for detection and sizing of DNA fragments. Scientific Reports. 11: 6490. PMID 33753781 DOI: 10.1038/s41598-021-85755-9   
2021 Diniz SN, da Silva CF, de Almeida IT, da Silva Costa FE, de Oliveira EML. INFβ treatment affects global DNA methylation in monocytes of patients with multiple sclerosis. Journal of Neuroimmunology. 355: 577563. PMID 33853016 DOI: 10.1016/j.jneuroim.2021.577563   
2021 Zhao Q, Wang W, Li JX, Yuan P, Liu Y, Li Y, Wang L, Song L. The DNA cytosine-5-methyltransferase 3 (DNMT3) involved in regulation of CgIL-17 expression in the immune response of oyster Crassostrea gigas. Developmental and Comparative Immunology. 104092. PMID 33819545 DOI: 10.1016/j.dci.2021.104092   
2021 Wegrzyn K, Zabrocka E, Bury K, Tomiczek B, Wieczor M, Czub J, Uciechowska U, Moreno-Del Alamo M, Walkow U, Grochowina I, Dutkiewicz R, Bujnicki JM, Giraldo R, Konieczny I. Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA. Nucleic Acids Research. 49: 3394-3408. PMID 33660784 DOI: 10.1093/nar/gkab113   
2021 Ueda S, Yamashita S, Watanabe SI, Wakabayashi M, Motoi N, Noguchi M, Sekine S, Sato Y, Ushijima T. Influence of degree of DNA degradation in formalin-fixed and paraffin-embedded tissue samples on accuracy of genome-wide DNA methylation analysis. Epigenomics. PMID 33820444 DOI: 10.2217/epi-2020-0431   
2021 Willaume S, Rass E, Fontanilla-Ramirez P, Moussa A, Wanschoor P, Bertrand P. A Link between Replicative Stress, Lamin Proteins, and Inflammation. Genes. 12. PMID 33918867 DOI: 10.3390/genes12040552   
2021 Westwood MN, Ljunggren KD, Boyd B, Becker J, Dwyer TJ, Meints GA. Single-Base Lesions and Mismatches Alter the Backbone Conformational Dynamics in DNA. Biochemistry. PMID 33689312 DOI: 10.1021/acs.biochem.0c00784   
2021 Davletgildeeva AT, Ishchenko AA, Saparbaev M, Fedorova OS, Kuznetsov NA. The Enigma of Substrate Recognition and Catalytic Efficiency of APE1-Like Enzymes. Frontiers in Cell and Developmental Biology. 9: 617161. PMID 33842455 DOI: 10.3389/fcell.2021.617161   
2021 Qu F, Tsegay PS, Liu Y. N-Methyladenosine, DNA Repair, and Genome Stability. Frontiers in Molecular Biosciences. 8: 645823. PMID 33898522 DOI: 10.3389/fmolb.2021.645823   
2021 Wang W, Ito T, Otsuka S, Nansai H, Abe K, Nakao Y, Ohgane J, Yoneda M, Sone H. Epigenetic effects of insecticides on early differentiation of mouse embryonic stem cells. Toxicology in Vitro : An International Journal Published in Association With Bibra. 75: 105174. PMID 33865946 DOI: 10.1016/j.tiv.2021.105174   
2021 Pauszek RF, Lamichhane R, Rajkarnikar Singh A, Millar DP. Single-molecule view of coordination in a multi-functional DNA polymerase. Elife. 10. PMID 33704066 DOI: 10.7554/eLife.62046   
2021 Sergi B, Bulut I, Xia Y, Waller ZAE, Yildizhan Y, Acilan C, Lord RM. Understanding the potential in vitro modes of action of bis(β-diketonato) oxovanadium(IV) complexes. Chemmedchem. PMID 33856120 DOI: 10.1002/cmdc.202100152   
2021 Wan L, Lam SL, Lee HK, Guo P. Effects of Adenine Methylation on the Structure and Thermodynamic Stability of a DNA Minidumbbell. International Journal of Molecular Sciences. 22. PMID 33807305 DOI: 10.3390/ijms22073633   
2021 Dixon G, Pan H, Yang D, Rosen BP, Jashari T, Verma N, Pulecio J, Caspi I, Lee K, Stransky S, Glezer A, Liu C, Rivas M, Kumar R, Lan Y, et al. QSER1 protects DNA methylation valleys from de novo methylation. Science (New York, N.Y.). 372. PMID 33833093 DOI: 10.1126/science.abd0875   
2021 Dilley K, Pagan F, Chapman B. Methods for ensuring the highest DNA concentration and yield in future and retrospective trace DNA extracts. Science & Justice : Journal of the Forensic Science Society. 61: 193-197. PMID 33736853 DOI: 10.1016/j.scijus.2020.11.005   
2021 Ming X, Zhu B, Li Y. Mitotic inheritance of DNA methylation: more than just copy and paste. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 33771455 DOI: 10.1016/j.jgg.2021.01.006   
2021 Li Z, Hua X, Serra-Cardona A, Xu X, Zhang Z. Efficient and strand-specific profiling of replicating chromatin with enrichment and sequencing of protein-associated nascent DNA in mammalian cells. Nature Protocols. PMID 33911256 DOI: 10.1038/s41596-021-00520-6   
2021 Steenwyk JL. Evolutionary Divergence in DNA Damage Responses among Fungi. Mbio. 12. PMID 33727357 DOI: 10.1128/mBio.03348-20   
2021 Li X, Zhang Y, Liu Q, Song S, Liu J. Poly ADP-ribose polymerase-1 promotes seed-setting rate by facilitating gametophyte development and meiosis in rice (Oryza sativa L.). The Plant Journal : For Cell and Molecular Biology. PMID 33977586 DOI: 10.1111/tpj.15344   
2021 Farhana FZ, Umer M, Saeed A, Pannu AS, Husaini S, Sonar P, Firoz SH, Shiddiky MJA. -MagnetoMethyl IP: a magnetic nanoparticle-mediated immunoprecipitation and electrochemical detection method for global DNA methylation. The Analyst. PMID 33949437 DOI: 10.1039/d1an00345c   
2021 Li Y, Xu Y, Liu T, Chang H, Yang X. The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 33860357 DOI: 10.1007/s00335-021-09870-8   
2021 Sarker AH, Cooper PK, Hazra TK. DNA glycosylase NEIL2 functions in multiple cellular processes. Progress in Biophysics and Molecular Biology. PMID 33753087 DOI: 10.1016/j.pbiomolbio.2021.03.003   
2021 Bigman LS, Greenblatt HM, Levy Y. What Are the Molecular Requirements for Protein Sliding along DNA? The Journal of Physical Chemistry. B. 125: 3119-3131. PMID 33754737 DOI: 10.1021/acs.jpcb.1c00757   
2021 Ye D, Wang J, Shen H, Feng X, Xiang L, Jin W, Zhao W, Ding J, He Z, Zou Y, Meng Q, Cui W, Zhang F, Di CA, Fan C, et al. An Oligonucleotide-Distortion-Responsive Organic Transistor for Platinum-Drug-Induced DNA-Damage Detection. Advanced Materials (Deerfield Beach, Fla.). e2100489. PMID 33987852 DOI: 10.1002/adma.202100489   
2021 Tripathi M, Rabbani S, Antony S, Malik A, Pande R, Asatkar AK. In-vitro investigation of biophysical interactions between Ag(I) complexes of bis (methyl)(thia/selena) salen and ct-DNA via multi-spectroscopic, physicochemical and molecular docking methods along with cytotoxicity study. Luminescence : the Journal of Biological and Chemical Luminescence. PMID 33834603 DOI: 10.1002/bio.4054   
2021 Del Prado A, Salas M. Strand Displacement and Unwinding Assays to Study the Concerted Action of the DNA Polymerase and SSB During Phi29 TP-DNA Replication. Methods in Molecular Biology (Clifton, N.J.). 2281: 333-342. PMID 33847970 DOI: 10.1007/978-1-0716-1290-3_22   
2021 Roy U, Greene EC. Single-Stranded DNA Curtains for Single-Molecule Visualization of Rad51-ssDNA Filament Dynamics. Methods in Molecular Biology (Clifton, N.J.). 2281: 193-207. PMID 33847959 DOI: 10.1007/978-1-0716-1290-3_11   
2021 Loveless TB, Grotts JH, Schechter MW, Forouzmand E, Carlson CK, Agahi BS, Liang G, Ficht M, Liu B, Xie X, Liu CC. Lineage tracing and analog recording in mammalian cells by single-site DNA writing. Nature Chemical Biology. PMID 33753928 DOI: 10.1038/s41589-021-00769-8   
2021 Wang S, Zhang Q, Shen Z, He Y, Chen ZH, Li J, Huang DS. Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture. Molecular Therapy. Nucleic Acids. 24: 154-163. PMID 33767912 DOI: 10.1016/j.omtn.2021.02.014   
2021 Aung MT, M Bakulski K, Feinberg JI, F Dou J, D Meeker J, Mukherjee B, Loch-Caruso R, Ladd-Acosta C, Volk HE, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Fallin MD. Maternal blood metal concentrations and whole blood DNA methylation during pregnancy in the Early Autism Risk Longitudinal Investigation (EARLI). Epigenetics. 1-16. PMID 33794742 DOI: 10.1080/15592294.2021.1897059   
2021 Fitieh A, Locke AJ, Motamedi M, Ismail IH. The Role of Polycomb Group Protein BMI1 in DNA Repair and Genomic Stability. International Journal of Molecular Sciences. 22. PMID 33804165 DOI: 10.3390/ijms22062976   
2021 Lee J, Jo I, Ahn J, Hong S, Jeong S, Kwon A, Ha NC. Crystal structure of the nuclease and capping domain of SbcD from Staphylococcus aureus. Journal of Microbiology (Seoul, Korea). PMID 33877576 DOI: 10.1007/s12275-021-1012-0   
2021 Song B, Wang C, Chen Y, Li G, Gao Y, Zhu F, Wu H, Lv M, Zhou P, Wei Z, He X, Cao Y. Sperm DNA integrity status is associated with DNA methylation signatures of imprinted genes and non-imprinted genes. Journal of Assisted Reproduction and Genetics. PMID 33786731 DOI: 10.1007/s10815-021-02157-6   
2021 Cheng M, Shu X, Cao J, Gao M, Xiang S, Wang F, Wang Y, Liu J. A Mutation-based Method for Pinpointing a DNA N6-methyladenine Methyltransferase's Modification Site at Single Base Resolution. Chembiochem : a European Journal of Chemical Biology. PMID 33779011 DOI: 10.1002/cbic.202100088   
2021 Moison C, Chagraoui J, Caron MC, Gagné JP, Coulombe Y, Poirier GG, Masson JY, Sauvageau G. Zinc finger protein E4F1 cooperates with PARP-1 and BRG1 to promote DNA double-strand break repair. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33692124 DOI: 10.1073/pnas.2019408118