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Anna Goldenberg, Ph.D. - Publications

Affiliations: 
2007 Carnegie Mellon University, Pittsburgh, PA 
Area:
Computer Science, Artificial Intelligence
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Malkin D, Light N, Subrasi V, Brew B, Paramathas S, Nabbi A, Prykhozhij S, Pugh T, Berman J, Goldenberg A, Shlien A. Abstract IA02: Novel strategies for early cancer detection and prevention: The Li-Fraumeni syndrome story Cancer Research. 80. DOI: 10.1158/1538-7445.Pedca19-Ia02  0.308
2019 Mer AS, Ba-Alawi W, Smirnov P, Wang YX, Brew B, Ortmann J, Tsao MS, Cescon DW, Goldenberg A, Haibe-Kains B. Integrative pharmacogenomics analysis of patient-derived xenografts. Cancer Research. PMID 31142512 DOI: 10.1158/0008-5472.Can-19-0349  0.345
2019 Nelson W, Zitnik M, Wang B, Leskovec J, Goldenberg A, Sharan R. To Embed or Not: Network Embedding as a Paradigm in Computational Biology. Frontiers in Genetics. 10: 381. PMID 31118945 DOI: 10.3389/Fgene.2019.00381  0.302
2019 Rampášek L, Hidru D, Smirnov P, Haibe-Kains B, Goldenberg A. Dr.VAE: Improving drug response prediction via modeling of drug perturbation effects. Bioinformatics (Oxford, England). PMID 30850846 DOI: 10.1093/Bioinformatics/Btz158  0.307
2019 Zitnik M, Nguyen F, Wang B, Leskovec J, Goldenberg A, Hoffman MM. Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities. An International Journal On Information Fusion. 50: 71-91. PMID 30467459 DOI: 10.1016/J.Inffus.2018.09.012  0.335
2019 Mer AS, Ba-alawi W, Smirnov P, Wang YX, Brew B, Tsao M, Cescon D, Goldenberg A, Haibe-Kains B. Abstract 3378: Systematic pharmacogenomic analysis of large patient derived xenografts data Cancer Research. 79: 3378-3378. DOI: 10.1158/1538-7445.Am2019-3378  0.351
2019 Subasri V, Light N, Brew B, Anderson N, Shlien A, Goldenberg A, Malkin D. Abstract 1639: Predictive modeling of cancer-type in Li-Fraumeni syndrome Cancer Research. 79: 1639-1639. DOI: 10.1158/1538-7445.Am2019-1639  0.341
2018 Zizzo AN, Erdman L, Feldman BM, Goldenberg A. Similarity Network Fusion: A Novel Application to Making Clinical Diagnoses. Rheumatic Diseases Clinics of North America. 44: 285-293. PMID 29622295 DOI: 10.1016/J.Rdc.2018.01.005  0.321
2017 Mezlini AM, Goldenberg A. Incorporating networks in a probabilistic graphical model to find drivers for complex human diseases. Plos Computational Biology. 13: e1005580. PMID 29023450 DOI: 10.1371/Journal.Pcbi.1005580  0.313
2017 Mamatjan Y, Agnihotri S, Goldenberg A, Tonge P, Mansouri S, Zadeh G, Aldape K. Molecular Signatures for Tumor Classification An Analysis of TCGA Data. The Journal of Molecular Diagnostics : Jmd. PMID 28867603 DOI: 10.1016/J.Jmoldx.2017.07.008  0.326
2017 Cavalli FMG, Remke M, Rampasek L, Peacock J, Shih DJH, Luu B, Garzia L, Torchia J, Nor C, Morrissy AS, Agnihotri S, Thompson YY, Kuzan-Fischer CM, Farooq H, Isaev K, ... ... Goldenberg A, et al. Intertumoral Heterogeneity within Medulloblastoma Subgroups. Cancer Cell. 31: 737-754.e6. PMID 28609654 DOI: 10.1016/J.Ccell.2017.05.005  0.311
2017 Brew BM, Malkin D, Erdman L, Doria A, Berman J, Shlien A, Guha T, Novokmet A, Goldenberg A. Abstract 973: Methylation accurately predicts age of cancer onset in patients with Li Fraumeni Syndrome Cancer Research. 77: 973-973. DOI: 10.1158/1538-7445.Am2017-973  0.311
2016 Safikhani Z, Smirnov P, Freeman M, El-Hachem N, She A, Rene Q, Goldenberg A, Birkbak NJ, Hatzis C, Shi L, Beck AH, Aerts HJWL, Quackenbush J, Haibe-Kains B. Revisiting inconsistency in large pharmacogenomic studies. F1000research. 5: 2333. PMID 28928933 DOI: 10.12688/F1000Research.9611.3  0.323
2016 Safikhani Z, El-Hachem N, Quevedo R, Smirnov P, Goldenberg A, Juul Birkbak N, Mason C, Hatzis C, Shi L, Aerts HJ, Quackenbush J, Haibe-Kains B. Assessment of pharmacogenomic agreement. F1000research. 5: 825. PMID 27408686 DOI: 10.12688/F1000Research.8705.1  0.318
2015 Smirnov P, Safikhani Z, El-Hachem N, Wang D, She A, Olsen C, Freeman M, Selby H, Gendoo DM, Grossman P, Beck AH, Aerts HJ, Lupien M, Goldenberg A, Haibe-Kains B. PharmacoGx: An R package for analysis of large pharmacogenomic datasets. Bioinformatics (Oxford, England). PMID 26656004 DOI: 10.1093/Bioinformatics/Btv723  0.336
2014 Wang B, Mezlini AM, Demir F, Fiume M, Tu Z, Brudno M, Haibe-Kains B, Goldenberg A. Similarity network fusion for aggregating data types on a genomic scale. Nature Methods. 11: 333-7. PMID 24464287 DOI: 10.1038/Nmeth.2810  0.357
2013 Mezlini AM, Smith EJ, Fiume M, Buske O, Savich GL, Shah S, Aparicio S, Chiang DY, Goldenberg A, Brudno M. iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data. Genome Research. 23: 519-29. PMID 23204306 DOI: 10.1101/Gr.142232.112  0.316
2011 Goldenberg A, Mostafavi S, Quon G, Boutros PC, Morris QD. Unsupervised detection of genes of influence in lung cancer using biological networks. Bioinformatics (Oxford, England). 27: 3166-72. PMID 21965819 DOI: 10.1093/Bioinformatics/Btr533  0.325
2011 Mostafavi S, Goldenberg A, Morris Q. Predicting node characteristics from molecular networks. Methods in Molecular Biology (Clifton, N.J.). 781: 399-414. PMID 21877293 DOI: 10.1007/978-1-61779-276-2_20  0.301
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