| Year |
Citation |
Score |
| 2022 |
Stow EC, Baddoo M, LaRosa AJ, LaCoste D, Deininger P, Belancio V. SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution. Mobile Dna. 13: 21. PMID 36028901 DOI: 10.1186/s13100-022-00276-0 |
0.687 |
|
| 2022 |
Freeman B, White T, Kaul T, Stow EC, Baddoo M, Ungerleider N, Morales M, Yang H, Deharo D, Deininger P, Belancio VP. Analysis of epigenetic features characteristic of L1 loci expressed in human cells. Nucleic Acids Research. PMID 35100410 DOI: 10.1093/nar/gkac013 |
0.812 |
|
| 2021 |
Stow EC, Kaul T, deHaro DL, Dem MR, Beletsky AG, Morales ME, Du Q, LaRosa AJ, Yang H, Smither E, Baddoo M, Ungerleider N, Deininger P, Belancio VP. Organ-, sex- and age-dependent patterns of endogenous L1 mRNA expression at a single locus resolution. Nucleic Acids Research. PMID 34023901 DOI: 10.1093/nar/gkab369 |
0.786 |
|
| 2021 |
Morales ME, Kaul T, Walker J, Everett C, White T, Deininger P. Altered DNA repair creates novel Alu/Alu repeat-mediated deletions. Human Mutation. PMID 33675284 DOI: 10.1002/humu.24193 |
0.83 |
|
| 2020 |
Kaul T, Morales ME, Sartor AO, Belancio VP, Deininger P. Comparative analysis on the expression of L1 loci using various RNA-Seq preparations. Mobile Dna. 11: 2. PMID 31921361 DOI: 10.1186/S13100-019-0194-Z |
0.816 |
|
| 2019 |
Kaul T, Morales ME, Smither E, Baddoo M, Belancio VP, Deininger P. RNA Next-Generation Sequencing and a Bioinformatics Pipeline to Identify Expressed LINE-1s at the Locus-Specific Level. Journal of Visualized Experiments : Jove. PMID 31157783 DOI: 10.3791/59771 |
0.836 |
|
| 2018 |
Morales ME, Kaul T, Deininger P. Long-Distance Relationships: Suppression of Repeat-Mediated Deletions. Trends in Genetics : Tig. PMID 29804746 DOI: 10.1016/J.Tig.2018.05.003 |
0.82 |
|
| 2018 |
Kaul T, Sabol R, Morales ME, Bunnell B, Deininger P. 2057 L1 expression analysis in adipose-derived stem cells Journal of Clinical and Translational Science. 2: 16-16. DOI: 10.1017/cts.2018.89 |
0.791 |
|
| 2017 |
Servant G, Streva VA, Deininger PL. Transcription coupled repair and biased insertion of human retrotransposon L1 in transcribed genes. Mobile Dna. 8: 18. PMID 29225704 DOI: 10.1186/S13100-017-0100-5 |
0.8 |
|
| 2017 |
Servant G, Streva VA, Derbes RS, Wijetunge MI, Neeland M, White TB, Belancio VP, Roy-Engel AM, Deininger PL. The Nucleotide Excision Repair Pathway Limits L1 Retrotransposition. Genetics. 205: 139-153. PMID 28049704 DOI: 10.1534/Genetics.116.188680 |
0.839 |
|
| 2016 |
Deininger P, Morales ME, White TB, Baddoo M, Hedges DJ, Servant G, Srivastav S, Smither ME, Concha M, DeHaro DL, Flemington EK, Belancio VP. A comprehensive approach to expression of L1 loci. Nucleic Acids Research. PMID 27899577 DOI: 10.1093/Nar/Gkw1067 |
0.821 |
|
| 2016 |
Morales ME, Derbes RS, Ade CM, Ortego JC, Stark J, Deininger PL, Roy-Engel AM. Heavy Metal Exposure Influences Double Strand Break DNA Repair Outcomes. Plos One. 11: e0151367. PMID 26966913 DOI: 10.1371/Journal.Pone.0151367 |
0.784 |
|
| 2016 |
Deininger P, Belancio VP. Detection of LINE-1 RNAs by Northern Blot. Methods in Molecular Biology (Clifton, N.J.). 1400: 223-236. PMID 26895057 DOI: 10.1007/978-1-4939-3372-3_15 |
0.762 |
|
| 2015 |
White TB, Morales ME, Deininger PL. Alu elements and DNA double-strand break repair. Mobile Genetic Elements. 5: 81-85. PMID 26942043 DOI: 10.1080/2159256X.2015.1093067 |
0.713 |
|
| 2015 |
Servant G, Deininger PL. Insertion of Retrotransposons at Chromosome Ends: Adaptive Response to Chromosome Maintenance. Frontiers in Genetics. 6: 358. PMID 26779254 DOI: 10.3389/fgene.2015.00358 |
0.319 |
|
| 2015 |
Streva VA, Jordan VE, Linker S, Hedges DJ, Batzer MA, Deininger PL. Sequencing, identification and mapping of primed L1 elements (SIMPLE) reveals significant variation in full length L1 elements between individuals. Bmc Genomics. 16: 220. PMID 25887476 DOI: 10.1186/S12864-015-1374-Y |
0.826 |
|
| 2015 |
Morales ME, White TB, Streva VA, DeFreece CB, Hedges DJ, Deininger PL. The contribution of alu elements to mutagenic DNA double-strand break repair. Plos Genetics. 11: e1005016. PMID 25761216 DOI: 10.1371/Journal.Pgen.1005016 |
0.843 |
|
| 2015 |
Deininger P. Jerzy Jurka – 1950–2014 Mobile Dna. 6: 1. DOI: 10.1186/S13100-014-0031-3 |
0.452 |
|
| 2014 |
Belancio VP, Blask DE, Deininger P, Hill SM, Jazwinski SM. The aging clock and circadian control of metabolism and genome stability. Frontiers in Genetics. 5: 455. PMID 25642238 DOI: 10.3389/Fgene.2014.00455 |
0.654 |
|
| 2014 |
White TB, McCoy AM, Streva VA, Fenrich J, Deininger PL. A droplet digital PCR detection method for rare L1 insertions in tumors. Mobile Dna. 5: 30. PMID 25598847 DOI: 10.1186/S13100-014-0030-4 |
0.797 |
|
| 2013 |
Ade C, Roy-Engel AM, Deininger PL. Alu elements: an intrinsic source of human genome instability. Current Opinion in Virology. 3: 639-45. PMID 24080407 DOI: 10.1016/J.Coviro.2013.09.002 |
0.847 |
|
| 2013 |
Zhang W, Edwards A, Fan W, Fang Z, Deininger P, Zhang K. Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data. Bmc Genomics. 14: 584. PMID 23984937 DOI: 10.1186/1471-2164-14-584 |
0.434 |
|
| 2013 |
Streva VA, Faber ZJ, Deininger PL. LINE-1 and Alu retrotransposition exhibit clonal variation. Mobile Dna. 4: 16. PMID 23732044 DOI: 10.1186/1759-8753-4-16 |
0.777 |
|
| 2013 |
Wallace NA, Gasior SL, Faber ZJ, Howie HL, Deininger PL, Galloway DA. HPV 5 and 8 E6 expression reduces ATM protein levels and attenuates LINE-1 retrotransposition. Virology. 443: 69-79. PMID 23706308 DOI: 10.1016/J.Virol.2013.04.022 |
0.756 |
|
| 2012 |
Zhang W, Edwards A, Zhu D, Flemington EK, Deininger P, Zhang K. miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines. Plos One. 7: e31429. PMID 22348086 DOI: 10.1371/Journal.Pone.0031429 |
0.58 |
|
| 2011 |
Deininger P. Alu elements: know the SINEs. Genome Biology. 12: 236. PMID 22204421 DOI: 10.1186/Gb-2011-12-12-236 |
0.485 |
|
| 2011 |
Zhang W, Edwards A, Fan W, Deininger P, Zhang K. Alu distribution and mutation types of cancer genes. Bmc Genomics. 12: 157. PMID 21429208 DOI: 10.1186/1471-2164-12-157 |
0.423 |
|
| 2011 |
Nesterova IV, Bennett CA, Erdem SS, Hammer RP, Deininger PL, Soper SA. Near-IR single fluorophore quenching system based on phthalocyanine (Pc) aggregation and its application for monitoring inhibitor/activator action on a therapeutic target: L1-EN. The Analyst. 136: 1103-5. PMID 21221467 DOI: 10.1039/C0An00782J |
0.59 |
|
| 2010 |
Wallace NA, Belancio VP, Faber Z, Deininger P. Feedback inhibition of L1 and alu retrotransposition through altered double strand break repair kinetics. Mobile Dna. 1: 22. PMID 20979631 DOI: 10.1186/1759-8753-1-22 |
0.798 |
|
| 2010 |
Chaconas G, Craig N, Curcio MJ, Deininger P, Feschotte C, Levin H, Rice PA, Voytas DF. Meeting report for mobile DNA 2010. Mobile Dna. 1: 20. PMID 20735816 DOI: 10.1186/1759-8753-1-20 |
0.329 |
|
| 2010 |
Belancio VP, Roy-Engel AM, Deininger PL. All y'all need to know 'bout retroelements in cancer. Seminars in Cancer Biology. 20: 200-10. PMID 20600922 DOI: 10.1016/J.Semcancer.2010.06.001 |
0.711 |
|
| 2010 |
Belancio VP, Roy-Engel AM, Pochampally RR, Deininger P. Somatic expression of LINE-1 elements in human tissues. Nucleic Acids Research. 38: 3909-22. PMID 20215437 DOI: 10.1093/Nar/Gkq132 |
0.689 |
|
| 2009 |
Zhang K, Fan W, Deininger P, Edwards A, Xu Z, Zhu D. Breaking the computational barrier: a divide-conquer and aggregate based approach for Alu insertion site characterisation. International Journal of Computational Biology and Drug Design. 2: 302-22. PMID 20090173 DOI: 10.1504/Ijcbdd.2009.030763 |
0.337 |
|
| 2009 |
Belancio VP, Deininger PL, Roy-Engel AM. LINE dancing in the human genome: transposable elements and disease. Genome Medicine. 1: 97. PMID 19863772 DOI: 10.1186/Gm97 |
0.723 |
|
| 2009 |
Comeaux MS, Roy-Engel AM, Hedges DJ, Deininger PL. Diverse cis factors controlling Alu retrotransposition: what causes Alu elements to die? Genome Research. 19: 545-55. PMID 19273617 DOI: 10.1101/Gr.089789.108 |
0.825 |
|
| 2009 |
Bochukova EG, Roscioli T, Hedges DJ, Taylor IB, Johnson D, David DJ, Deininger PL, Wilkie AO. Rare mutations of FGFR2 causing apert syndrome: identification of the first partial gene deletion, and an Alu element insertion from a new subfamily. Human Mutation. 30: 204-11. PMID 18726952 DOI: 10.1002/humu.20825 |
0.761 |
|
| 2008 |
Wallace NA, Belancio VP, Deininger PL. L1 mobile element expression causes multiple types of toxicity. Gene. 419: 75-81. PMID 18555620 DOI: 10.1016/J.Gene.2008.04.013 |
0.806 |
|
| 2008 |
Wallace N, Wagstaff BJ, Deininger PL, Roy-Engel AM. LINE-1 ORF1 protein enhances Alu SINE retrotransposition. Gene. 419: 1-6. PMID 18534786 DOI: 10.1016/J.Gene.2008.04.007 |
0.695 |
|
| 2008 |
Gasior SL, Roy-Engel AM, Deininger PL. ERCC1/XPF limits L1 retrotransposition. Dna Repair. 7: 983-9. PMID 18396111 DOI: 10.1016/j.dnarep.2008.02.006 |
0.401 |
|
| 2008 |
Belancio VP, Roy-Engel AM, Deininger P. The impact of multiple splice sites in human L1 elements. Gene. 411: 38-45. PMID 18261861 DOI: 10.1016/J.Gene.2007.12.022 |
0.728 |
|
| 2008 |
Belancio VP, Hedges DJ, Deininger P. Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. Genome Research. 18: 343-58. PMID 18256243 DOI: 10.1101/Gr.5558208 |
0.825 |
|
| 2007 |
Lentz J, Pan F, Ng SS, Deininger P, Keats B. Ush1c216A knock-in mouse survives Katrina. Mutation Research. 616: 139-44. PMID 17174357 DOI: 10.1016/J.Mrfmmm.2006.11.006 |
0.33 |
|
| 2007 |
Hedges DJ, Deininger PL. Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity. Mutation Research. 616: 46-59. PMID 17157332 DOI: 10.1016/j.mrfmmm.2006.11.021 |
0.815 |
|
| 2007 |
Gasior SL, Preston G, Hedges DJ, Gilbert N, Moran JV, Deininger PL. Characterization of pre-insertion loci of de novo L1 insertions. Gene. 390: 190-8. PMID 17067767 DOI: 10.1016/J.Gene.2006.08.024 |
0.807 |
|
| 2007 |
Batzer MA, Deininger PL, Jurka J, Moran JV. Introduction for the Gene special issue dedicated to the meeting "Genomic impact of eukaryotic transposable elements" at Asilomar. Gene. 390: 1-2. PMID 17027200 DOI: 10.1016/J.Gene.2006.07.036 |
0.698 |
|
| 2007 |
Belancio VP, Whelton M, Deininger P. Requirements for polyadenylation at the 3' end of LINE-1 elements. Gene. 390: 98-107. PMID 17023124 DOI: 10.1016/J.Gene.2006.07.029 |
0.762 |
|
| 2006 |
Xing J, Wang H, Belancio VP, Cordaux R, Deininger PL, Batzer MA. Emergence of primate genes by retrotransposon-mediated sequence transduction. Proceedings of the National Academy of Sciences of the United States of America. 103: 17608-13. PMID 17101974 DOI: 10.1073/Pnas.0603224103 |
0.846 |
|
| 2006 |
Battilana J, Fagundes NJ, Heller AH, Goldani A, Freitas LB, Tarazona-Santos E, Munkhbat B, Munkhtuvshin N, Krylov M, Benevolenskaia L, Arnett FC, Batzer MA, Deininger PL, Salzano FM, Bonatto SL. Alu insertion polymorphisms in Native Americans and related Asian populations. Annals of Human Biology. 33: 142-60. PMID 16684689 DOI: 10.1080/03014460500487347 |
0.611 |
|
| 2006 |
Belancio VP, Hedges DJ, Deininger P. LINE-1 RNA splicing and influences on mammalian gene expression. Nucleic Acids Research. 34: 1512-21. PMID 16554555 DOI: 10.1093/Nar/Gkl027 |
0.822 |
|
| 2006 |
Gasior SL, Wakeman TP, Xu B, Deininger PL. The human LINE-1 retrotransposon creates DNA double-strand breaks. Journal of Molecular Biology. 357: 1383-93. PMID 16490214 DOI: 10.1016/j.jmb.2006.01.089 |
0.363 |
|
| 2005 |
Kale SP, Moore L, Deininger PL, Roy-Engel AM. Heavy metals stimulate human LINE-1 retrotransposition. International Journal of Environmental Research and Public Health. 2: 14-23. PMID 16705797 |
0.378 |
|
| 2005 |
El-Sawy M, Kale SP, Dugan C, Nguyen TQ, Belancio V, Bruch H, Roy-Engel AM, Deininger PL. Nickel stimulates L1 retrotransposition by a post-transcriptional mechanism. Journal of Molecular Biology. 354: 246-57. PMID 16249005 DOI: 10.1016/J.Jmb.2005.09.050 |
0.733 |
|
| 2005 |
Roy-Engel AM, El-Sawy M, Farooq L, Odom GL, Perepelitsa-Belancio V, Bruch H, Oyeniran OO, Deininger PL. Human retroelements may introduce intragenic polyadenylation signals. Cytogenetic and Genome Research. 110: 365-71. PMID 16093688 DOI: 10.1159/000084968 |
0.674 |
|
| 2005 |
Fagundes NJ, Salzano FM, Batzer MA, Deininger PL, Bonatto SL. Worldwide genetic variation at the 3'-UTR region of the LDLR gene: possible influence of natural selection. Annals of Human Genetics. 69: 389-400. PMID 15996168 DOI: 10.1046/J.1529-8817.2005.00163.X |
0.666 |
|
| 2005 |
El-Sawy M, Deininger P. Tandem insertions of Alu elements. Cytogenetic and Genome Research. 108: 58-62. PMID 15545716 DOI: 10.1159/000080802 |
0.457 |
|
| 2004 |
Kass DH, Knight A, Deininger PL. Evolution of a hypervariable region of the low density lipoprotein receptor (LDLR) gene in humans and other hominoids. Genetica. 121: 187-93. PMID 15330118 DOI: 10.1023/B:GENE.0000040387.14317.98 |
0.367 |
|
| 2004 |
Odom GL, Robichaux JL, Deininger PL. Predicting mammalian SINE subfamily activity from A-tail length. Molecular Biology and Evolution. 21: 2140-8. PMID 15297600 DOI: 10.1093/Molbev/Msh225 |
0.641 |
|
| 2004 |
Savas S, Frischhertz B, Batzer MA, Deininger PL, Keats BJ. Structure, diversity, and evolution of the 45-bp VNTR in intron 5 of the USH1C gene. Genomics. 83: 439-44. PMID 14962669 DOI: 10.1016/J.Ygeno.2003.09.006 |
0.608 |
|
| 2003 |
Deininger PL, Moran JV, Batzer MA, Kazazian HH. Mobile elements and mammalian genome evolution. Current Opinion in Genetics & Development. 13: 651-8. PMID 14638329 DOI: 10.1016/J.Gde.2003.10.013 |
0.725 |
|
| 2003 |
Perepelitsa-Belancio V, Deininger P. RNA truncation by premature polyadenylation attenuates human mobile element activity. Nature Genetics. 35: 363-6. PMID 14625551 DOI: 10.1038/Ng1269 |
0.486 |
|
| 2003 |
Johanning K, Stevenson CA, Oyeniran OO, Gozal YM, Roy-Engel AM, Jurka J, Deininger PL. Potential for retroposition by old Alu subfamilies. Journal of Molecular Evolution. 56: 658-64. PMID 12911029 DOI: 10.1007/S00239-002-2433-Y |
0.418 |
|
| 2002 |
Deininger PL, Batzer MA. Mammalian retroelements. Genome Research. 12: 1455-65. PMID 12368238 DOI: 10.1101/gr.282402 |
0.739 |
|
| 2002 |
Roy-Engel AM, Salem AH, Oyeniran OO, Deininger L, Hedges DJ, Kilroy GE, Batzer MA, Deininger PL. Active Alu element "A-tails": size does matter. Genome Research. 12: 1333-44. PMID 12213770 DOI: 10.1101/Gr.384802 |
0.848 |
|
| 2002 |
West N, Roy-Engel AM, Imataka H, Sonenberg N, Deininger P. Shared protein components of SINE RNPs. Journal of Molecular Biology. 321: 423-32. PMID 12162956 DOI: 10.1016/S0022-2836(02)00542-9 |
0.718 |
|
| 2002 |
Batzer MA, Deininger PL. Alu repeats and human genomic diversity. Nature Reviews. Genetics. 3: 370-9. PMID 11988762 DOI: 10.1038/Nrg798 |
0.737 |
|
| 2002 |
Roy-Engel AM, Carroll ML, El-Sawy M, Salem AH, Garber RK, Nguyen SV, Deininger PL, Batzer MA. Non-traditional Alu evolution and primate genomic diversity. Journal of Molecular Biology. 316: 1033-40. PMID 11884141 DOI: 10.1006/Jmbi.2001.5380 |
0.842 |
|
| 2002 |
Savas S, Frischhertz B, Pelias MZ, Batzer MA, Deininger PL, Keats BB. The USH1C 216G-->A mutation and the 9-repeat VNTR(t,t) allele are in complete linkage disequilibrium in the Acadian population. Human Genetics. 110: 95-7. PMID 11810303 DOI: 10.1007/S00439-001-0653-7 |
0.6 |
|
| 2001 |
Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 159: 279-90. PMID 11560904 |
0.843 |
|
| 2001 |
Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, et al. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. Journal of Molecular Biology. 311: 17-40. PMID 11469855 DOI: 10.1006/Jmbi.2001.4847 |
0.83 |
|
| 2001 |
Justice CM, Den Z, Nguyen SV, Stoneking M, Deininger PL, Batzer MA, Keats BJ. Phylogenetic analysis of the Friedreich ataxia GAA trinucleotide repeat. Journal of Molecular Evolution. 52: 232-8. PMID 11428460 DOI: 10.1007/S002390010151 |
0.684 |
|
| 2001 |
Stoneking M, Deininger P, Batzer M. Interspersed repeat polymorphisms and human evolution Pathologie Biologie. 49: 391. DOI: 10.1016/S0369-8114(01)00182-1 |
0.675 |
|
| 2000 |
Alemán C, Roy-Engel AM, Shaikh TH, Deininger PL. Cis-acting influences on Alu RNA levels. Nucleic Acids Research. 28: 4755-61. PMID 11095687 |
0.625 |
|
| 2000 |
Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Research. 10: 1485-95. PMID 11042148 DOI: 10.1101/Gr.152300 |
0.844 |
|
| 2000 |
Roy AM, West NC, Rao A, Adhikari P, Alemán C, Barnes AP, Deininger PL. Upstream flanking sequences and transcription of SINEs. Journal of Molecular Biology. 302: 17-25. PMID 10964558 DOI: 10.1006/Jmbi.2000.4027 |
0.825 |
|
| 2000 |
Zhang Y, Dipple KM, Vilain E, Huang BL, Finlayson G, Therrell BL, Worley K, Deininger P, McCabe ER. AluY insertion (IVS4-52ins316alu) in the glycerol kinase gene from an individual with benign glycerol kinase deficiency. Human Mutation. 15: 316-23. PMID 10737976 DOI: 10.1002/(Sici)1098-1004(200004)15:4<316::Aid-Humu3>3.0.Co;2-9 |
0.307 |
|
| 2000 |
Chen C, Parker MS, Barnes AP, Deininger P, Bobbin RP. Functional expression of three P2X(2) receptor splice variants from guinea pig cochlea. Journal of Neurophysiology. 83: 1502-9. PMID 10712475 DOI: 10.1152/Jn.2000.83.3.1502 |
0.613 |
|
| 1999 |
Roy AM, Carroll ML, Kass DH, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Recently integrated human Alu repeats: finding needles in the haystack. Genetica. 107: 149-61. PMID 10952208 DOI: 10.1023/A:1003941704138 |
0.848 |
|
| 1999 |
Deininger PL, Batzer MA. Alu repeats and human disease. Molecular Genetics and Metabolism. 67: 183-93. PMID 10381326 DOI: 10.1006/Mgme.1999.2864 |
0.733 |
|
| 1998 |
Roy AM, Gong C, Kass DH, Deininger PL. Recent B2 element insertions in the mouse genome. Dna Sequence : the Journal of Dna Sequencing and Mapping. 8: 343-8. PMID 10993604 DOI: 10.3109/10425179809034078 |
0.315 |
|
| 1998 |
Scott DA, Greinwald JH, Marietta JR, Drury S, Swiderski RE, Viñas A, DeAngelis MM, Carmi R, Ramesh A, Kraft ML, Elbedour K, Skworak AB, Friedman RA, Srikumari Srisailapathy CR, Verhoeven K, ... ... Deininger PL, et al. Identification and mutation analysis of a cochlear-expressed, zinc finger protein gene at the DFNB7/11 and dn hearing-loss loci on human chromosome 9q and mouse chromosome 19. Gene. 215: 461-9. PMID 9758550 DOI: 10.1016/S0378-1119(98)00316-3 |
0.663 |
|
| 1998 |
Viñas AM, Drury SS, DeAngelis MM, Den Z, Huang JM, Berlin CI, Hunt JD, Batzer MA, Deininger PL, Keats BJ. The mouse deafness locus (dn) is associated with an inversion on chromosome 19. Biochimica Et Biophysica Acta. 1407: 257-62. PMID 9748617 DOI: 10.1016/S0925-4439(98)00050-7 |
0.626 |
|
| 1998 |
DeAngelis MM, Doucet JP, Drury S, Sherry ST, Robichaux MB, Den Z, Pelias MZ, Ditta GM, Keats BJ, Deininger PL, Batzer MA. Assembly of a high-resolution map of the Acadian Usher syndrome region and localization of the nuclear EF-hand acidic gene. Biochimica Et Biophysica Acta. 1407: 84-91. PMID 9639681 DOI: 10.1016/S0925-4439(98)00025-8 |
0.755 |
|
| 1998 |
Novick GE, Novick CC, Yunis J, Yunis E, Antunez de Mayolo P, Scheer WD, Deininger PL, Stoneking M, York DS, Batzer MA, Herrera RJ. Polymorphic Alu insertions and the Asian origin of Native American populations. Human Biology. 70: 23-39. PMID 9489232 |
0.608 |
|
| 1997 |
Stoneking M, Fontius JJ, Clifford SL, Soodyall H, Arcot SS, Saha N, Jenkins T, Tahir MA, Deininger PL, Batzer MA. Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa. Genome Research. 7: 1061-71. PMID 9371742 DOI: 10.1101/Gr.7.11.1061 |
0.655 |
|
| 1997 |
Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL, Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutation Research. 382: 5-11. PMID 9360633 DOI: 10.1016/S1383-5726(97)00002-2 |
0.726 |
|
| 1997 |
Shaikh TH, Roy AM, Kim J, Batzer MA, Deininger PL. cDNAs derived from primary and small cytoplasmic Alu (scAlu) transcripts. Journal of Molecular Biology. 271: 222-34. PMID 9268654 DOI: 10.1006/Jmbi.1997.1161 |
0.824 |
|
| 1997 |
Kass DH, Kim J, Rao A, Deininger PL. Evolution of B2 repeats: the muroid explosion. Genetica. 99: 1-13. PMID 9226433 DOI: 10.1007/Bf02259494 |
0.671 |
|
| 1997 |
Batzer MA, Sherry ST, Deininger PL, Stoneking M. Alu repeats and human evolution. Response. Journal of Molecular Evolution. 45: 7-8. PMID 9211728 DOI: 10.1007/Pl00006198 |
0.641 |
|
| 1997 |
Deininger P. DNA Sequencing Strategies: Automated and Advanced Approaches. Edited by W. Ansorge, H. Voss, and J. Zimmermann Analytical Biochemistry. 247: 462. DOI: 10.1006/Abio.1997.2081 |
0.34 |
|
| 1996 |
Kass DH, Batzer MA, Deininger PL. Characterization and population diversity of interspersed repeat sequence variants (IRS-morphs). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 39: 688-96. PMID 18469928 DOI: 10.1139/G96-087 |
0.724 |
|
| 1996 |
Arcot SS, Adamson AW, Lamerdin JE, Kanagy B, Deininger PL, Carrano AV, Batzer MA. Alu fossil relics--distribution and insertion polymorphism. Genome Research. 6: 1084-92. PMID 8938432 DOI: 10.1101/Gr.6.11.1084 |
0.726 |
|
| 1996 |
Deininger PL, Tiedge H, Kim J, Brosius J. Evolution, expression, and possible function of a master gene for amplification of an interspersed repeated DNA family in rodents. Progress in Nucleic Acid Research and Molecular Biology. 52: 67-88. PMID 8821258 DOI: 10.1016/S0079-6603(08)60964-2 |
0.631 |
|
| 1996 |
Kim J, Deininger PL. Recent amplification of rat ID sequences. Journal of Molecular Biology. 261: 322-7. PMID 8780774 DOI: 10.1006/Jmbi.1996.0464 |
0.649 |
|
| 1996 |
Knight A, Batzer MA, Stoneking M, Tiwari HK, Scheer WD, Herrera RJ, Deininger PL. DNA sequences of Alu elements indicate a recent replacement of the human autosomal genetic complement. Proceedings of the National Academy of Sciences of the United States of America. 93: 4360-4. PMID 8633071 DOI: 10.1073/Pnas.93.9.4360 |
0.712 |
|
| 1996 |
Kass DH, Kim J, Deininger PL. Sporadic amplification of ID elements in rodents. Journal of Molecular Evolution. 42: 7-14. PMID 8576967 DOI: 10.1007/Bf00163205 |
0.697 |
|
| 1996 |
Batzer MA, Deininger PL, Hellmann-Blumberg U, Jurka J, Labuda D, Rubin CM, Schmid CW, Zietkiewicz E, Zuckerkandl E. Standardized nomenclature for Alu repeats. Journal of Molecular Evolution. 42: 3-6. PMID 8576960 DOI: 10.1007/Bf00163204 |
0.715 |
|
| 1996 |
Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, et al. Genetic variation of recent Alu insertions in human populations. Journal of Molecular Evolution. 42: 22-9. PMID 8576959 DOI: 10.1007/Bf00163207 |
0.683 |
|
| 1996 |
Shaikh TH, Deininger PL. The role and amplification of the HS Alu subfamily founder gene. Journal of Molecular Evolution. 42: 15-21. PMID 8576958 DOI: 10.1007/BF00163206 |
0.581 |
|
| 1996 |
Novick GE, Batzer MA, Deininger PL, Herrera RJ. The Mobile Genetic Element "Alu" in the Human Genome Bioscience. 46: 32-41. DOI: 10.2307/1312653 |
0.739 |
|
| 1996 |
Batzer MA, Deininger PL, Schmid CW. SINEs, LINEs and retrotransposable elements: Functional implications Journal of Molecular Evolution. 42: 1-1. DOI: 10.1007/Bf00163203 |
0.738 |
|
| 1996 |
Novick GE, Batzer MA, Deininger PL, Herrera RJ. The mobile genetic element Alu in the human genome Bioscience. 46: 32-41. |
0.708 |
|
| 1996 |
Novick GE, Batzer MA, Deininger PL, Herrera RJ. The mobile genetic element Alu in the human genome Bioscience. 46: 32-41. |
0.355 |
|
| 1995 |
Novick GE, Novick CC, Yunis J, Yunis E, Martinez K, Duncan GG, Troup GM, Deininger PL, Stoneking M, Batzer MA. Polymorphic human specific Alu insertions as markers for human identification. Electrophoresis. 16: 1596-601. PMID 8582340 DOI: 10.1002/Elps.11501601263 |
0.703 |
|
| 1995 |
Arcot SS, Wang Z, Weber JL, Deininger PL, Batzer MA. Alu repeats: a source for the genesis of primate microsatellites. Genomics. 29: 136-44. PMID 8530063 DOI: 10.1006/Geno.1995.1224 |
0.734 |
|
| 1995 |
Kass DH, Batzer MA, Deininger PL. A new restriction-site polymorphism in exon 18 of the low density lipoprotein receptor (LDLR) gene. Human Genetics. 95: 363-4. PMID 7868136 DOI: 10.1007/Bf00225211 |
0.611 |
|
| 1995 |
Kass DH, Batzer MA, Deininger PL. Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution. Molecular and Cellular Biology. 15: 19-25. PMID 7799926 DOI: 10.1128/Mcb.15.1.19 |
0.748 |
|
| 1995 |
Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. Journal of Molecular Biology. 247: 418-27. PMID 7714898 DOI: 10.1006/Jmbi.1994.0150 |
0.824 |
|
| 1995 |
Arcot SS, Fontius JJ, Deininger PL, Batzer MA. Identification and analysis of a 'young' polymorphic Alu element. Biochimica Et Biophysica Acta. 1263: 99-102. PMID 7632743 DOI: 10.1016/0167-4781(95)00080-Z |
0.706 |
|
| 1995 |
Arcot SS, Shaikh TH, Kim J, Bennett L, Alegria-Hartman M, Nelson DO, Deininger PL, Batzer MA. Sequence diversity and chromosomal distribution of "young" Alu repeats. Gene. 163: 273-8. PMID 7590280 DOI: 10.1016/0378-1119(95)00317-Y |
0.846 |
|
| 1995 |
Norris J, Fan D, Aleman C, Marks JR, Futreal PA, Wiseman RW, Iglehart JD, Deininger PL, McDonnell DP. Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers. The Journal of Biological Chemistry. 270: 22777-82. PMID 7559405 DOI: 10.1074/Jbc.270.39.22777 |
0.3 |
|
| 1995 |
Kim J, Kass DH, Deininger PL. Transcription and processing of the rodent ID repeat family in germline and somatic cells. Nucleic Acids Research. 23: 2245-51. PMID 7541910 DOI: 10.1093/Nar/23.12.2245 |
0.642 |
|
| 1994 |
Kim J, Martignetti JA, Shen MR, Brosius J, Deininger P. Rodent BC1 RNA gene as a master gene for ID element amplification. Proceedings of the National Academy of Sciences of the United States of America. 91: 3607-11. PMID 8170955 DOI: 10.1073/Pnas.91.9.3607 |
0.705 |
|
| 1994 |
Batzer MA, Stoneking M, Alegria-Hartman M, Bazan H, Kass DH, Shaikh TH, Novick GE, Ioannou PA, Scheer WD, Herrera RJ, Deininger PL. African origin of human-specific polymorphic Alu insertions Proceedings of the National Academy of Sciences of the United States of America. 91: 12288-12292. PMID 7991620 DOI: 10.1073/Pnas.91.25.12288 |
0.779 |
|
| 1994 |
Batzer MA, Alegria-Hartman M, Deininger PL. A consensus Alu repeat probe for physical mapping. Genetic Analysis, Techniques and Applications. 11: 34-8. PMID 7917498 DOI: 10.1016/1050-3862(94)90058-2 |
0.704 |
|
| 1994 |
Kass DH, Aleman C, Batzer MA, Deininger PL. Identification of a human specific Alu insertion in the factor XIIIB gene. Genetica. 94: 1-8. PMID 7729692 DOI: 10.1007/Bf01429214 |
0.696 |
|
| 1993 |
Novick GE, Gonzalez T, Garrison J, Novick CC, Batzer MA, Deininger PL, Herrera RJ. The use of polymorphic Alu insertions in human DNA fingerprinting. Exs. 67: 283-91. PMID 8400699 DOI: 10.1007/978-3-0348-8583-6_26 |
0.695 |
|
| 1993 |
Deininger P. Induction of DNA rearrangement and transposition. Proceedings of the National Academy of Sciences of the United States of America. 90: 3780-1. PMID 8387196 DOI: 10.1073/Pnas.90.9.3780 |
0.495 |
|
| 1993 |
Batzer MA, Schmid CW, Deininger PL. Evolutionary analyses of repetitive DNA sequences. Methods in Enzymology. 224: 213-32. PMID 8264388 DOI: 10.1016/0076-6879(93)24017-O |
0.771 |
|
| 1993 |
Deininger PL, Batzer MA. Evolution of retroposons Evol.Biol.. 27: 157-196. DOI: 10.1007/978-1-4615-2878-4_5 |
0.653 |
|
| 1992 |
Batzer MA, Bazan HA, Kim J, Morrow SL, Shaikh TH, Arcot SS, Deininger PL. Large-scale subcloning of bacteriophage lambda ZAP clones. Biotechniques. 12: 370-1. PMID 1533305 |
0.451 |
|
| 1992 |
Shen MR, Deininger PL. An in vivo assay for measuring the recombination potential between DNA sequences in mammalian cells. Analytical Biochemistry. 205: 83-9. PMID 1443563 DOI: 10.1016/0003-2697(92)90582-R |
0.303 |
|
| 1992 |
Deininger PL, Batzer MA, Hutchison CA, Edgell MH. Master genes in mammalian repetitive DNA amplification. Trends in Genetics : Tig. 8: 307-11. PMID 1365396 DOI: 10.1016/0168-9525(92)90262-3 |
0.655 |
|
| 1991 |
Batzer MA, Carlton JE, Deininger PL. Enhanced evolutionary PCR using oligonucleotides with inosine at the 3'-terminus. Nucleic Acids Research. 19: 5081. PMID 1923780 DOI: 10.1093/Nar/19.18.5081 |
0.623 |
|
| 1991 |
Batzer MA, Deininger PL. A human-specific subfamily of Alu sequences. Genomics. 9: 481-7. PMID 1851725 DOI: 10.1016/0888-7543(91)90414-A |
0.707 |
|
| 1991 |
Batzer MA, Gudi VA, Mena JC, Foltz DW, Herrera RJ, Deininger PL. Amplification dynamics of human-specific (HS) Alu family members. Nucleic Acids Research. 19: 3619-23. PMID 1649453 DOI: 10.1093/Nar/19.13.3619 |
0.652 |
|
| 1991 |
Batzer MA, Kilroy GE, Richard PE, Shaikh TH, Desselle TD, Hoppens CL, Deininger PL. Structure and variability of recently inserted alu family members Nucleic Acids Research. 19: 698. DOI: 10.1093/nar/19.3.698-b |
0.462 |
|
| 1990 |
Batzer MA, Kilroy GE, Richard PE, Shaikh TH, Desselle TD, Hoppens CL, Deininger PL. Structure and variability of recently inserted Alu family members. Nucleic Acids Research. 18: 6793-8. PMID 2175877 DOI: 10.1093/Nar/18.23.6793 |
0.75 |
|
| 1989 |
Slagel VK, Deininger PL. In vivo transcription of a cloned prosimian primate SINE sequence. Nucleic Acids Research. 17: 8669-82. PMID 2479909 |
0.312 |
|
| 1987 |
Flemington E, Bradshaw HD, Traina-Dorge V, Slagel V, Deininger PL. Sequence, structure and promoter characterization of the human thymidine kinase gene. Gene. 52: 267-77. PMID 3301530 DOI: 10.1016/0378-1119(87)90053-9 |
0.638 |
|
| 1987 |
Slagel V, Flemington E, Traina-Dorge V, Bradshaw H, Deininger P. Clustering and subfamily relationships of the Alu family in the human genome. Molecular Biology and Evolution. 4: 19-29. PMID 3128713 DOI: 10.1093/Oxfordjournals.Molbev.A040422 |
0.622 |
|
| 1985 |
Daniels GR, Deininger PL. Repeat sequence families derived from mammalian tRNA genes. Nature. 317: 819-22. PMID 3851163 |
0.354 |
|
| 1985 |
Daniels GR, Deininger PL. Integration site preferences of the Alu family and similar repetitive DNA sequences. Nucleic Acids Research. 13: 8939-54. PMID 3001654 DOI: 10.1093/nar/13.24.8939 |
0.335 |
|
| 1985 |
Heller M, Flemington E, Kieff E, Deininger P. Repeat arrays in cellular DNA related to the Epstein-Barr virus IR3 repeat. Molecular and Cellular Biology. 5: 457-65. PMID 2985954 DOI: 10.1128/Mcb.5.3.457 |
0.67 |
|
| 1985 |
Derse D, Diniak AJ, Casey JW, Deininger PL. Nucleotide sequence and structure of integrated bovine leukemia virus long terminal repeats. Virology. 141: 162-6. PMID 2983496 DOI: 10.1016/0042-6822(85)90193-X |
0.304 |
|
| 1983 |
Farrell PJ, Bankier A, Séguin C, Deininger P, Barrell BG. Latent and lytic cycle promoters of Epstein-Barr virus Embo Journal. 2: 1331-1338. PMID 10872327 DOI: 10.1002/J.1460-2075.1983.Tb01588.X |
0.365 |
|
| 1983 |
Daniels GR, Fox GM, Loewensteiner D, Schmid CW, Deininger PL. Species-specific homogeneity of the primate Alu family of repeated DNA sequences. Nucleic Acids Research. 11: 7579-93. PMID 6647031 DOI: 10.1093/Nar/11.21.7579 |
0.614 |
|
| 1982 |
Deininger PL, Bankier A, Farrell P, Baer R, Barrell B. Sequence analysis and in vitro transcription of portions of the Epstein-Barr virus genome Journal of Cellular Biochemistry. 19: 267-274. PMID 6296170 DOI: 10.1002/Jcb.240190308 |
0.347 |
|
| 1981 |
Rinehart FP, Ritch TG, Deininger PL, Schmid CW. Renaturation rate studies of a single family of interspersed repeated sequences in human deoxyribonucleic acid. Biochemistry. 20: 3003-10. PMID 6788076 DOI: 10.1021/Bi00514A003 |
0.64 |
|
| 1981 |
Deininger PL, Jolly DJ, Rubin CM, Friedmann T, Schmid CW. Base sequence studies of 300 nucleotide renatured repeated human DNA clones. Journal of Molecular Biology. 151: 17-33. PMID 6276559 DOI: 10.1016/0022-2836(81)90219-9 |
0.721 |
|
| 1981 |
Fuhrman SA, Deininger PL, LaPorte P, Friedmann T, Geiduschek EP. Analysis of transcription of the human Alu family ubiquitous repeating element by eukaryotic RNA polymerase III. Nucleic Acids Research. 9: 6439-56. PMID 6275362 DOI: 10.1093/Nar/9.23.6439 |
0.501 |
|
| 1981 |
Deininger PL, LaPorte P, Friedmann T. Nucleotide sequence changes in polyoma ts-a mutants: correlation with protein structure. Journal of Virology. 37: 871-5. PMID 6262533 DOI: 10.1128/Jvi.37.3.871-875.1981 |
0.413 |
|
| 1981 |
Fujimura FK, Deininger PL, Friedmann T, Linney E. Mutation near the polyoma DNA replication origin permits productive infection of F9 embryonal carcinoma cells. Cell. 23: 809-14. PMID 6261957 DOI: 10.1016/0092-8674(81)90445-1 |
0.461 |
|
| 1981 |
Srivatsan ES, Deininger PL, Friedmann T. Nucleotide sequence at polyoma VP1 mRNA splice sites. Journal of Virology. 37: 244-7. PMID 6260979 DOI: 10.1128/Jvi.37.1.244-247.1981 |
0.512 |
|
| 1981 |
Eckhart W, Delbrück S, Deininger P, Friedmann T, Hunter T. A mutation increasing the size of the polyoma virion proteins, VP2 and VP3. Virology. 109: 35-46. PMID 6258312 DOI: 10.1016/0042-6822(81)90469-4 |
0.516 |
|
| 1980 |
Rubin CM, Deininger PL, Houck CM, Schmid CW. A dimer satellite sequence in bonnet monkey DNA consists of distinct monomer subunits. Journal of Molecular Biology. 136: 151-67. PMID 6768891 DOI: 10.1016/0022-2836(80)90310-1 |
0.631 |
|
| 1980 |
Hunter T, Hutchinson MA, Eckhart W, Friedmann T, Esty A, La Porte P, Deininger P. Organization of T antigens in the polyoma virus genome. Cold Spring Harbor Symposia On Quantitative Biology. 44: 131-9. PMID 6253126 DOI: 10.1101/Sqb.1980.044.01.015 |
0.506 |
|
| 1980 |
Jelinek WR, Toomey TP, Leinwand L, Duncan CH, Biro PA, Choudary PV, Weissman SM, Rubin CM, Houck CM, Deininger PL, Schmid CW. Ubiquitous, interspersed repeated sequences in mammalian genomes. Proceedings of the National Academy of Sciences of the United States of America. 77: 1398-402. PMID 6246492 DOI: 10.1073/Pnas.77.3.1398 |
0.655 |
|
| 1980 |
Rubin CM, Houck CM, Deininger PL, Friedmann T, Schmid CW. Partial nucleotide sequence of the 300-nucleotide interspersed repeated human DNA sequences. Nature. 284: 372-4. PMID 6244506 DOI: 10.1038/284372A0 |
0.718 |
|
| 1979 |
Hunter T, Hutchinson MA, Eckhart W, Friedmann T, Esty A, LaPorte P, Deininger P. Regions of the polyoma genome coding for T antigens. Nucleic Acids Research. 7: 2275-88. PMID 230465 DOI: 10.1093/Nar/7.8.2275 |
0.532 |
|
| 1979 |
Deininger P, Esty A, LaPorte P, Friedmann T. Nucleotide sequence and genetic organization of the polyoma late region: features common to the polyoma early region and SV40. Cell. 18: 771-9. PMID 229965 DOI: 10.1016/0092-8674(79)90130-2 |
0.558 |
|
| 1979 |
Friedmann T, Esty A, LaPorte P, Deininger P. The nucleotide sequence and genome organization of the polyoma early region: extensive nucleotide and amino acid homology with SV40. Cell. 17: 715-24. PMID 225042 DOI: 10.1016/0092-8674(79)90278-2 |
0.55 |
|
| 1979 |
Deininger PL, Schmid CW. A study of the evolution of repeated DNA sequences in primates and the existence of a new class of repetitive sequences in primates. Journal of Molecular Biology. 127: 437-60. PMID 107318 DOI: 10.1016/0022-2836(79)90231-6 |
0.654 |
|
| 1978 |
Rinehart FP, Deininger PL, Schmid CW. A critical examination of possible fractionations of human DNA according to base composition. Biochimica Et Biophysica Acta. 520: 21-37. PMID 81071 DOI: 10.1016/0005-2787(78)90004-7 |
0.612 |
|
| 1976 |
Deininger PL, Schmid CW. An electron microscope study of the DNA sequence organization of the human genome. Journal of Molecular Biology. 106: 773-90. PMID 988187 DOI: 10.1016/0022-2836(76)90264-3 |
0.66 |
|
| 1976 |
Deininger PL, Schmid CW. Thermal stability of human DNA and chimpanzee DNA heteroduplexes. Science (New York, N.Y.). 194: 846-8. PMID 982047 DOI: 10.1126/Science.982047 |
0.587 |
|
| 1975 |
Schmid CW, Deininger PL. Sequence organization of the human genome. Cell. 6: 345-58. PMID 1052772 DOI: 10.1016/0092-8674(75)90184-1 |
0.658 |
|
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