| Year |
Citation |
Score |
| 2023 |
Rems L, Rainot A, Wiczew D, Szulc N, Tarek M. Cellular excitability and ns-pulsed electric fields: Potential involvement of lipid oxidation in the action potential activation. Bioelectrochemistry (Amsterdam, Netherlands). 155: 108588. PMID 37879163 DOI: 10.1016/j.bioelechem.2023.108588 |
0.322 |
|
| 2023 |
Kongmeneck AD, Kasimova MA, Tarek M. Modulation of the I channel by PIP requires two binding sites per monomer. Bba Advances. 3: 100073. PMID 37082259 DOI: 10.1016/j.bbadva.2023.100073 |
0.456 |
|
| 2021 |
Loussouarn G, Tarek M. Editorial: Molecular Mechanisms of Voltage-Gating in Ion Channels. Frontiers in Pharmacology. 12: 768153. PMID 34603066 DOI: 10.3389/fphar.2021.768153 |
0.347 |
|
| 2021 |
Wiczew D, Szulc N, Tarek M. Molecular dynamics simulations of the effects of lipid oxidation on the permeability of cell membranes. Bioelectrochemistry (Amsterdam, Netherlands). 141: 107869. PMID 34119820 DOI: 10.1016/j.bioelechem.2021.107869 |
0.323 |
|
| 2020 |
Cierluk K, Szlasa W, Rossowska J, Tarek M, Szewczyk A, Saczko J, Kulbacka J. Cepharanthine induces ROS stress in glioma and neuronal cells via modulation of VDAC permeability. Saudi Pharmaceutical Journal : Spj : the Official Publication of the Saudi Pharmaceutical Society. 28: 1364-1373. PMID 33250643 DOI: 10.1016/J.Jsps.2020.08.026 |
0.392 |
|
| 2020 |
Szlasa W, Zendran I, Zalesińska A, Tarek M, Kulbacka J. Lipid composition of the cancer cell membrane. Journal of Bioenergetics and Biomembranes. PMID 32715369 DOI: 10.1007/S10863-020-09846-4 |
0.361 |
|
| 2020 |
Escoffre JM, Campomanes P, Tarek M, Bouakaz A. New insights on the role of ROS in the mechanisms of sonoporation-mediated gene delivery. Ultrasonics Sonochemistry. 64: 104998. PMID 32062534 DOI: 10.1016/J.Ultsonch.2020.104998 |
0.347 |
|
| 2020 |
Hou P, Kang PW, Kongmeneck AD, Yang ND, Liu Y, Shi J, Xu X, White KM, Zaydman MA, Kasimova MA, Seebohm G, Zhong L, Zou X, Tarek M, Cui J. Two-stage electro-mechanical coupling of a K channel in voltage-dependent activation. Nature Communications. 11: 676. PMID 32015334 DOI: 10.1038/S41467-020-14406-W |
0.395 |
|
| 2020 |
Hou P, Kang PW, Kongmeneck AD, Yang N, Liu Y, Shi J, Xu X, White KM, Zaydman MA, Kasimova MA, Seebohm G, Zhong L, Zou X, Tarek M, Cui J. Two-stage “Hand-and-Elbow” Gating Mechanism of a KV Channel Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.764 |
0.38 |
|
| 2019 |
Kotnik T, Rems L, Tarek M, Miklavčič D. Membrane Electroporation and Electropermeabilization: Mechanisms and Models. Annual Review of Biophysics. PMID 30786231 DOI: 10.1146/Annurev-Biophys-052118-115451 |
0.477 |
|
| 2019 |
Rems L, Viano M, Kasimova MA, Miklavčič D, Tarek M. The contribution of lipid peroxidation to membrane permeability in electropermeabilization: A molecular dynamics study. Bioelectrochemistry (Amsterdam, Netherlands). 125: 46-57. PMID 30265863 DOI: 10.1016/J.Bioelechem.2018.07.018 |
0.458 |
|
| 2018 |
Bonhenry D, Dehez F, Tarek M. Effects of hydration on the protonation state of a lysine analog crossing a phospholipid bilayer - insights from molecular dynamics and free-energy calculations. Physical Chemistry Chemical Physics : Pccp. 20: 9101-9107. PMID 29565093 DOI: 10.1039/C8Cp00312B |
0.415 |
|
| 2018 |
Deyawe A, Kasimova MA, Delemotte L, Loussouarn G, Tarek M. Studying Kv Channels Function using Computational Methods. Methods in Molecular Biology (Clifton, N.J.). 1684: 321-341. PMID 29058202 DOI: 10.1007/978-1-4939-7362-0_24 |
0.691 |
|
| 2017 |
Tarek M. Atomistic Simulations of Electroporation of Model Cell Membranes. Advances in Anatomy, Embryology, and Cell Biology. 227: 1-15. PMID 28980037 DOI: 10.1007/978-3-319-56895-9_1 |
0.408 |
|
| 2016 |
Rems L, Tarek M, Casciola M, Miklavčič D. Properties of lipid electropores II: Comparison of continuum-level modeling of pore conductance to molecular dynamics simulations. Bioelectrochemistry (Amsterdam, Netherlands). 112: 112-24. PMID 27091314 DOI: 10.1016/J.Bioelechem.2016.03.005 |
0.449 |
|
| 2016 |
Casciola M, Tarek M. A molecular insight into the electro-transfer of small molecules through electropores driven by electric fields. Biochimica Et Biophysica Acta. 1858: 2278-2289. PMID 27018309 DOI: 10.1016/J.Bbamem.2016.03.022 |
0.444 |
|
| 2016 |
Casciola M, Kasimova MA, Rems L, Zullino S, Apollonio F, Tarek M. Properties of lipid electropores I: Molecular dynamics simulations of stabilized pores by constant charge imbalance. Bioelectrochemistry (Amsterdam, Netherlands). 109: 108-16. PMID 26883056 DOI: 10.1016/J.Bioelechem.2016.01.006 |
0.493 |
|
| 2016 |
Tarek M, Delemotte L, Kasimova M, Klein ML, Carnevale V. In-Silico Electrophysiology: On the Activation of Voltage-Gated Ion Channels using Molecular Dynamics Simulations Biophysical Journal. 110: 107a. DOI: 10.1016/J.Bpj.2015.11.633 |
0.752 |
|
| 2015 |
Cournia Z, Allen TW, Andricioaei I, Antonny B, Baum D, Brannigan G, Buchete NV, Deckman JT, Delemotte L, Del Val C, Friedman R, Gkeka P, Hege HC, Hénin J, Kasimova MA, ... ... Tarek M, et al. Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory. The Journal of Membrane Biology. 248: 611-40. PMID 26063070 DOI: 10.1007/S00232-015-9802-0 |
0.689 |
|
| 2015 |
Kasimova MA, Zaydman MA, Cui J, Tarek M. PIP₂-dependent coupling is prominent in Kv7.1 due to weakened interactions between S4-S5 and S6. Scientific Reports. 5: 7474. PMID 25559286 DOI: 10.1038/Srep07474 |
0.423 |
|
| 2015 |
Delemotte L, Kasimova MA, Klein ML, Tarek M, Carnevale V. Free-energy landscape of ion-channel voltage-sensor-domain activation. Proceedings of the National Academy of Sciences of the United States of America. 112: 124-9. PMID 25535341 DOI: 10.1073/Pnas.1416959112 |
0.726 |
|
| 2015 |
Polak A, Velikonja A, Kramar P, Tarek M, Miklavčič D. Electroporation threshold of POPC lipid bilayers with incorporated polyoxyethylene glycol (C12E8) Journal of Physical Chemistry B. 119: 192-200. PMID 25495217 DOI: 10.1021/Jp509789M |
0.545 |
|
| 2015 |
Kasimova MA, Delemotte L, Klein ML, Carnevale V, Tarek M. PIP2 Modifies the Free Energy of the Kv1.2 Voltage-Sensor Activation Biophysical Journal. 108: 120a. DOI: 10.1016/J.Bpj.2014.11.673 |
0.7 |
|
| 2015 |
Delemotte L, Carnevale V, Klein ML, Kasimova MA, Tarek M. Molecular Determinants of Voltage Sensor Domain Activation Biophysical Journal. 108: 427a. DOI: 10.1016/J.Bpj.2014.11.2336 |
0.713 |
|
| 2015 |
Zaydman MA, Kasimova M, Delaloye K, Shi J, Liang H, Beller Z, Tarek M, Cui J. The Mechanism of KCNE1 Modulation of KCNQ1 Channels Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.1911 |
0.48 |
|
| 2014 |
Conti Nibali V, D'Angelo G, Paciaroni A, Tobias DJ, Tarek M. On the Coupling between the Collective Dynamics of Proteins and Their Hydration Water. The Journal of Physical Chemistry Letters. 5: 1181-6. PMID 26274468 DOI: 10.1021/Jz500023E |
0.322 |
|
| 2014 |
Garrec J, Monari A, Assfeld X, Mir LM, Tarek M. Lipid Peroxidation in Membranes: The Peroxyl Radical Does Not "Float". The Journal of Physical Chemistry Letters. 5: 1653-8. PMID 26270361 DOI: 10.1021/Jz500502Q |
0.4 |
|
| 2014 |
Zaydman MA, Kasimova MA, McFarland K, Beller Z, Hou P, Kinser HE, Liang H, Zhang G, Shi J, Tarek M, Cui J. Domain-domain interactions determine the gating, permeation, pharmacology, and subunit modulation of the IKs ion channel. Elife. 3: e03606. PMID 25535795 DOI: 10.7554/Elife.03606 |
0.409 |
|
| 2014 |
Amarouch MY, Kasimova MA, Tarek M, Abriel H. Functional interaction between S1 and S4 segments in voltage-gated sodium channels revealed by human channelopathies. Channels (Austin, Tex.). 8: 414-20. PMID 25483584 DOI: 10.4161/19336950.2014.958922 |
0.406 |
|
| 2014 |
Conti Nibali V, D'Angelo G, Tarek M. Molecular dynamics simulation of short-wavelength collective dynamics of phospholipid membranes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 89. PMID 25353727 DOI: 10.1103/Physreve.89.050301 |
0.35 |
|
| 2014 |
Polak A, Tarek M, Tomšič M, Valant J, Poklar Ulrih N, Jamnik A, Kramar P, Miklavčič D. Structural properties of archaeal lipid bilayers: Small-angle X-ray scattering and molecular dynamics simulation study Langmuir. 30: 8308-8315. PMID 25000416 DOI: 10.1021/La5014208 |
0.454 |
|
| 2014 |
Salomone F, Breton M, Leray I, Cardarelli F, Boccardi C, Bonhenry D, Tarek M, Mir LM, Beltram F. High-yield nontoxic gene transfer through conjugation of the CM₁₈-Tat₁₁ chimeric peptide with nanosecond electric pulses. Molecular Pharmaceutics. 11: 2466-74. PMID 24865174 DOI: 10.1021/Mp500223T |
0.365 |
|
| 2014 |
Casciola M, Bonhenry D, Liberti M, Apollonio F, Tarek M. A molecular dynamic study of cholesterol rich lipid membranes: comparison of electroporation protocols. Bioelectrochemistry (Amsterdam, Netherlands). 100: 11-7. PMID 24731593 DOI: 10.1016/J.Bioelechem.2014.03.009 |
0.435 |
|
| 2014 |
Kasimova MA, Tarek M, Shaytan AK, Shaitan KV, Delemotte L. Voltage-gated ion channel modulation by lipids: insights from molecular dynamics simulations. Biochimica Et Biophysica Acta. 1838: 1322-31. PMID 24513257 DOI: 10.1016/J.Bbamem.2014.01.024 |
0.725 |
|
| 2014 |
Polak A, Tarek M, Tomšič M, Valant J, Ulrih NP, Jamnik A, Kramar P, Miklavčič D. Electroporation of archaeal lipid membranes using MD simulations Bioelectrochemistry. 100: 18-26. PMID 24461702 DOI: 10.1016/J.Bioelechem.2013.12.006 |
0.429 |
|
| 2014 |
Tarek M. Prerequisites to proton transport in the bacterial ClC-ec1 Cl-/H+ exchanger. Proceedings of the National Academy of Sciences of the United States of America. 111: 1668-9. PMID 24459185 DOI: 10.1073/Pnas.1323186111 |
0.382 |
|
| 2014 |
Zaydman MA, Kasimova MA, McFarland K, Beller Z, Hou P, Kinser HE, Liang H, Zhang G, Shi J, Tarek M, Cui J. Author response: Domain–domain interactions determine the gating, permeation, pharmacology, and subunit modulation of the IKs ion channel Elife. DOI: 10.7554/Elife.03606.019 |
0.37 |
|
| 2014 |
Dehez F, Delemotte L, Kramar P, Miklavčič D, Tarek M. Evidence of Conducting Hydrophobic Nanopores Across Membranes in Response to an Electric Field Journal of Physical Chemistry C. 118: 6752-6757. DOI: 10.1021/Jp4114865 |
0.694 |
|
| 2014 |
Zaydman MA, Kasimova M, Beller Z, Delaloye K, Shi J, Silva JR, Tarek M, Cui J. State-Dependent Lipid Interactions Couple the Conformations of the Voltage-Sensing and Pore-Gate Domains Biophysical Journal. 106: 742a. DOI: 10.1016/J.Bpj.2013.11.4085 |
0.457 |
|
| 2014 |
Kasimova M, Shaytan A, Shaitan K, Tarek M. Investigation of Ion Permeation through the Cx26 Hemichannel Biophysical Journal. 106: 5-6. DOI: 10.1016/J.Bpj.2013.11.3093 |
0.443 |
|
| 2014 |
Kasimova M, Delemotte L, Polak A, Miklavcic D, Casciola M, Apollonio F, Breton M, Mir L, Shaytan A, Shaitan K, Tarek M. Molecular Insights into Electroporation and Electrotransfer through Model Cell Membranes Biophysical Journal. 106: 291. DOI: 10.1016/J.Bpj.2013.11.1701 |
0.696 |
|
| 2014 |
Delemotte L, Kasimova M, Carnevale V, Klein ML, Tarek M. Multi-Dimensional Free Energy Landscape of Voltage Sensor Domain Activation Biophysical Journal. 106: 233a. DOI: 10.1016/J.Bpj.2013.11.1367 |
0.713 |
|
| 2013 |
Bonhenry D, Tarek M, Dehez F. Effects of Phospholipid Composition on the Transfer of a Small Cationic Peptide Across a Model Biological Membrane. Journal of Chemical Theory and Computation. 9: 5675-84. PMID 26592298 DOI: 10.1021/Ct400576E |
0.457 |
|
| 2013 |
Abriel H, de Lange E, Kucera JP, Loussouarn G, Tarek M. Computational tools to investigate genetic cardiac channelopathies. Frontiers in Physiology. 4: 390. PMID 24421770 DOI: 10.3389/Fphys.2013.00390 |
0.317 |
|
| 2013 |
Lacerda L, Ali-Boucetta H, Kraszewski S, Tarek M, Prato M, Ramseyer C, Kostarelos K, Bianco A. How do functionalized carbon nanotubes land on, bind to and pierce through model and plasma membranes. Nanoscale. 5: 10242-50. PMID 24056765 DOI: 10.1039/C3Nr03184E |
0.338 |
|
| 2013 |
Polak A, Bonhenry D, Dehez F, Kramar P, Miklavčič D, Tarek M. On the electroporation thresholds of lipid bilayers: Molecular dynamics simulation investigations Journal of Membrane Biology. 246: 843-850. PMID 23780415 DOI: 10.1007/S00232-013-9570-7 |
0.464 |
|
| 2013 |
Tarek M, Delemotte L. Omega currents in voltage-gated ion channels: what can we learn from uncovering the voltage-sensing mechanism using MD simulations? Accounts of Chemical Research. 46: 2755-62. PMID 23697886 DOI: 10.1021/Ar300290U |
0.737 |
|
| 2013 |
Abderemane-Ali F, Es-Salah-Lamoureux Z, Delemotte L, Kasimova MA, Labro AJ, Snyders DJ, Fedida D, Tarek M, Baró I, Loussouarn G. Dual effect of phosphatidylinositol (4,5)-bisphosphate PIP2on Shaker K+channels. Journal of Biological Chemistry. 288: 10951-10951. DOI: 10.1074/Jbc.A112.382085 |
0.601 |
|
| 2013 |
Paciaroni A, Conti Nibali V, Orecchini A, Petrillo C, Haertlein M, Moulin M, Tarek M, D’Angelo G, Sacchetti F. Vibrational excitations of proteins and their hydration water in the far-infrared range Chemical Physics. 424: 80-83. DOI: 10.1016/J.Chemphys.2013.05.013 |
0.31 |
|
| 2013 |
Abderemane-Ali F, Es-Salah-Lamoureux Z, Delemotte L, Kasimova MA, Labro AJ, Snyders DJ, Fedida D, Tarek M, Baró I, Loussouarn G. Dual Effect of PIP2 on Shaker K+ Channels Biophysical Journal. 104: 464a. DOI: 10.1016/J.Bpj.2012.11.2567 |
0.715 |
|
| 2013 |
Delemotte L, Kasimova M, Tarek M, Treptow W, Carnevale V, Klein ML. Voltage Gated Cation Channels Activation: Towards an Ab-Initio Kinetic Model Biophysical Journal. 104: 279a. DOI: 10.1016/J.Bpj.2012.11.1565 |
0.727 |
|
| 2012 |
Vargas E, Yarov-Yarovoy V, Khalili-Araghi F, Catterall WA, Klein ML, Tarek M, Lindahl E, Schulten K, Perozo E, Bezanilla F, Roux B. An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations. The Journal of General Physiology. 140: 587-94. PMID 23183694 DOI: 10.1085/Jgp.201210873 |
0.6 |
|
| 2012 |
Loussouarn G, Tarek M. Mechanisms of Ion Channels Voltage-Dependency: All about Molecular Sensors, Gates, Levers, Locks, and Grease. Frontiers in Pharmacology. 3: 174. PMID 23060794 DOI: 10.3389/Fphar.2012.00174 |
0.465 |
|
| 2012 |
Abderemane-Ali F, Es-Salah-Lamoureux Z, Delemotte L, Kasimova MA, Labro AJ, Snyders DJ, Fedida D, Tarek M, Baró I, Loussouarn G. Dual effect of phosphatidylinositol (4,5)-bisphosphate PIP(2) on Shaker K(+) [corrected] channels. The Journal of Biological Chemistry. 287: 36158-67. PMID 22932893 DOI: 10.1074/Jbc.M112.382085 |
0.715 |
|
| 2012 |
Kramar P, Delemotte L, Maček Lebar A, Kotulska M, Tarek M, Miklavčič D. Molecular-level characterization of lipid membrane electroporation using linearly rising current. The Journal of Membrane Biology. 245: 651-9. PMID 22886207 DOI: 10.1007/S00232-012-9487-6 |
0.71 |
|
| 2012 |
Breton M, Delemotte L, Silve A, Mir LM, Tarek M. Transport of siRNA through lipid membranes driven by nanosecond electric pulses: an experimental and computational study. Journal of the American Chemical Society. 134: 13938-41. PMID 22880891 DOI: 10.1021/Ja3052365 |
0.652 |
|
| 2012 |
Kraszewski S, Bianco A, Tarek M, Ramseyer C. Insertion of short amino-functionalized single-walled carbon nanotubes into phospholipid bilayer occurs by passive diffusion. Plos One. 7: e40703. PMID 22815794 DOI: 10.1371/Journal.Pone.0040703 |
0.395 |
|
| 2012 |
Delemotte L, Klein ML, Tarek M. Molecular dynamics simulations of voltage-gated cation channels: insights on voltage-sensor domain function and modulation. Frontiers in Pharmacology. 3: 97. PMID 22654756 DOI: 10.3389/Fphar.2012.00097 |
0.746 |
|
| 2012 |
Delemotte L, Tarek M. Molecular dynamics simulations of lipid membrane electroporation. The Journal of Membrane Biology. 245: 531-43. PMID 22644388 DOI: 10.1007/S00232-012-9434-6 |
0.684 |
|
| 2012 |
Kotnik T, Kramar P, Pucihar G, Miklavcic D, Tarek M. Cell membrane electroporation- Part 1: The phenomenon Ieee Electrical Insulation Magazine. 28: 14-23. DOI: 10.1109/Mei.2012.6268438 |
0.431 |
|
| 2011 |
Kraszewski S, Tarek M, Ramseyer C. Uptake and translocation mechanisms of cationic amino derivatives functionalized on pristine C60 by lipid membranes: a molecular dynamics simulation study. Acs Nano. 5: 8571-8. PMID 21981729 DOI: 10.1021/Nn201952C |
0.455 |
|
| 2011 |
Kaye MD, Schmalzl K, Nibali VC, Tarek M, Rheinstädter MC. Ethanol enhances collective dynamics of lipid membranes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 050907. PMID 21728483 DOI: 10.1103/Physreve.83.050907 |
0.365 |
|
| 2011 |
Delemotte L, Tarek M, Klein ML, Amaral C, Treptow W. Intermediate states of the Kv1.2 voltage sensor from atomistic molecular dynamics simulations Proceedings of the National Academy of Sciences of the United States of America. 108: 6109-6114. PMID 21444776 DOI: 10.1073/Pnas.1102724108 |
0.747 |
|
| 2011 |
Delemotte L, Treptow W, Klein ML, Tarek M. On the function and modulation of the Kv1.2 voltage-gated ion channel: Insights from large-scale all-atom molecular dynamics simulations F1000research. 2. DOI: 10.7490/F1000Research.1340.1 |
0.5 |
|
| 2011 |
Sautot P, Tarek M, Stébé M, Paris C, Arab-Tehrany E, Linder M. Structural, hydration, and phase transition properties of phosphatidylcholine from salmon heads European Journal of Lipid Science and Technology. 113: 744-755. DOI: 10.1002/Ejlt.201000449 |
0.386 |
|
| 2010 |
Delemotte L, Treptow W, Klein ML, Tarek M. Effect of sensor domain mutations on the properties of voltage-gated ion channels: molecular dynamics studies of the potassium channel Kv1.2. Biophysical Journal. 99: L72-4. PMID 21044565 DOI: 10.1016/J.Bpj.2010.08.069 |
0.734 |
|
| 2010 |
Kraszewski S, Tarek M, Treptow W, Ramseyer C. Affinity of C60 neat fullerenes with membrane proteins: a computational study on potassium channels. Acs Nano. 4: 4158-64. PMID 20568711 DOI: 10.1021/Nn100723R |
0.484 |
|
| 2010 |
Khalfa A, Tarek M. On the antibacterial action of cyclic peptides: insights from coarse-grained MD simulations. The Journal of Physical Chemistry. B. 114: 2676-84. PMID 20143883 DOI: 10.1021/Jp9064196 |
0.38 |
|
| 2010 |
Sautot P, Linder M, Tarek M. Influence of multiple double bonds on the structural and dynamical properties of a multi-component PC membrane extracted from Salmon heads Chemistry and Physics of Lipids. 163. DOI: 10.1016/J.Chemphyslip.2010.05.091 |
0.36 |
|
| 2009 |
Tobias DJ, Sengupta N, Tarek M. Hydration dynamics of purple membranes. Faraday Discussions. 141: 99-116; discussion 1. PMID 19227353 DOI: 10.1039/B809371G |
0.417 |
|
| 2009 |
Treptow W, Tarek M, Klein ML. Initial response of the potassium channel voltage sensor to a transmembrane potential Journal of the American Chemical Society. 131: 2107-2109. PMID 19175309 DOI: 10.1021/Ja807330G |
0.594 |
|
| 2009 |
Khalfa A, Treptow W, Maigret B, Tarek M. Self assembly of peptides near or within membranes using coarse grained MD simulations Chemical Physics. 358: 161-170. DOI: 10.1016/J.Chemphys.2009.01.012 |
0.354 |
|
| 2008 |
Tarek M, Tobias DJ. The role of protein-solvent hydrogen bond dynamics in the structural relaxation of a protein in glycerol versus water. European Biophysics Journal : Ebj. 37: 701-9. PMID 18427802 DOI: 10.1007/S00249-008-0324-X |
0.331 |
|
| 2008 |
Delemotte L, Dehez F, Treptow W, Tarek M. Modeling membranes under a transmembrane potential. The Journal of Physical Chemistry. B. 112: 5547-50. PMID 18412411 DOI: 10.1021/Jp710846Y |
0.7 |
|
| 2008 |
Treptow W, Marrink SJ, Tarek M. Gating motions in voltage-gated potassium channels revealed by coarse-grained molecular dynamics simulations. The Journal of Physical Chemistry. B. 112: 3277-82. PMID 18293960 DOI: 10.1021/Jp709675E |
0.531 |
|
| 2007 |
Dehez F, Tarek M, Chipot C. Energetics of ion transport in a peptide nanotube. The Journal of Physical Chemistry. B. 111: 10633-5. PMID 17705530 DOI: 10.1021/Jp075308S |
0.466 |
|
| 2006 |
Treptow W, Tarek M. K+ conduction in the selectivity filter of potassium channels is monitored by the charge distribution along their sequence. Biophysical Journal. 91: L81-3. PMID 16980355 DOI: 10.1529/Biophysj.106.095992 |
0.412 |
|
| 2006 |
Treptow W, Tarek M. Molecular restraints in the permeation pathway of ion channels. Biophysical Journal. 91: L26-8. PMID 16751240 DOI: 10.1529/Biophysj.106.087437 |
0.47 |
|
| 2006 |
Chipot C, Tarek M. Interaction of a peptide nanotube with a water-membrane interface. Physical Biology. 3: S20-5. PMID 16582462 DOI: 10.1088/1478-3975/3/1/S03 |
0.425 |
|
| 2006 |
Treptow W, Tarek M. Environment of the gating charges in the Kv1.2 Shaker potassium channel. Biophysical Journal. 90: L64-6. PMID 16533847 DOI: 10.1529/Biophysj.106.080754 |
0.508 |
|
| 2006 |
Hénin J, Maigret B, Tarek M, Escrieut C, Fourmy D, Chipot C. Probing a model of a GPCR/ligand complex in an explicit membrane environment: the human cholecystokinin-1 receptor. Biophysical Journal. 90: 1232-40. PMID 16326901 DOI: 10.1529/Biophysj.105.070599 |
0.333 |
|
| 2005 |
Tarek M. Membrane electroporation: a molecular dynamics simulation. Biophysical Journal. 88: 4045-53. PMID 15764667 DOI: 10.1529/Biophysj.104.050617 |
0.498 |
|
| 2004 |
Curtis JE, Tarek M, Tobias DJ. Methyl group dynamics as a probe of the protein dynamical transition. Journal of the American Chemical Society. 126: 15928-9. PMID 15584703 DOI: 10.1021/Ja0480623 |
0.323 |
|
| 2004 |
Treptow W, Maigret B, Chipot C, Tarek M. Coupled motions between pore and voltage-sensor domains: a model for Shaker B, a voltage-gated potassium channel. Biophysical Journal. 87: 2365-79. PMID 15454436 DOI: 10.1529/Biophysj.104.039628 |
0.537 |
|
| 2003 |
Tarek M, Maigret B, Chipot C. Molecular dynamics investigation of an oriented cyclic peptide nanotube in DMPC bilayers. Biophysical Journal. 85: 2287-98. PMID 14507693 DOI: 10.1016/S0006-3495(03)74653-0 |
0.458 |
|
| 2003 |
Koubi L, Saiz L, Tarek M, Scharf D, Klein ML. Influence of Anesthetic and Nonimmobilizer Molecules on the Physical Properties of a Polyunsaturated Lipid Bilayer Journal of Physical Chemistry B. 107: 14500-14508. DOI: 10.1021/Jp035169O |
0.439 |
|
| 2002 |
Tarek M, Tobias DJ. Single-particle and collective dynamics of protein hydration water: a molecular dynamics study. Physical Review Letters. 89: 275501. PMID 12513215 DOI: 10.1103/Physrevlett.89.275501 |
0.314 |
|
| 2002 |
Koubi L, Tarek M, Bandyopadhyay S, Klein ML, Scharf D. Effects of the nonimmobilizer hexafluroethane on the model membrane dimyristoylphosphatidylcholine. Anesthesiology. 97: 848-55. PMID 12357150 DOI: 10.1097/00000542-200210000-00016 |
0.473 |
|
| 2002 |
Koubi L, Tarek M, Bandyopadhyay S, Klein ML, Scharf D. Membrane structural perturbations caused by anesthetics and nonimmobilizers: a molecular dynamics investigation. Biophysical Journal. 81: 3339-45. PMID 11720997 DOI: 10.1016/S0006-3495(01)75967-X |
0.572 |
|
| 2000 |
Majkrzak CF, Berk NF, Krueger S, Dura JA, Tarek M, Tobias D, Silin V, Meuse CW, Woodward J, Plant AL. First-principles determination of hybrid bilayer membrane structure by phase-sensitive neutron reflectometry Biophysical Journal. 79: 3330-3340. PMID 11106635 DOI: 10.1016/S0006-3495(00)76564-7 |
0.37 |
|
| 2000 |
Tarek M, Tobias DJ. The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments. Biophysical Journal. 79: 3244-57. PMID 11106628 DOI: 10.1016/S0006-3495(00)76557-X |
0.336 |
|
| 2000 |
Koubi L, Tarek M, Klein ML, Scharf D. Distribution of halothane in a dipalmitoylphosphatidylcholine bilayer from molecular dynamics calculations. Biophysical Journal. 78: 800-11. PMID 10653792 DOI: 10.1016/S0006-3495(00)76637-9 |
0.522 |
|
| 2000 |
Bandyopadhyay S, Tarek M, Lynch ML, Klein ML. Molecular dynamics study of the poly(oxyethylene) surfactant C12E2 and water Langmuir. 16: 942-946. DOI: 10.1021/La9909493 |
0.464 |
|
| 2000 |
Tarek M, Martyna GJ, Tobias DJ. Amplitudes and frequencies of protein dynamics: Analysis of discrepancies between neutron scattering and molecular dynamics simulations [1] Journal of the American Chemical Society. 122: 10450-10451. DOI: 10.1021/Ja0016506 |
0.326 |
|
| 1999 |
Tarek M, Tu K, Klein ML, Tobias DJ. Molecular dynamics simulations of supported phospholipid/alkanethiol bilayers on a gold(111) surface. Biophysical Journal. 77: 964-72. PMID 10423441 DOI: 10.1016/S0006-3495(99)76947-X |
0.533 |
|
| 1999 |
Bandyopadhyay S, Tarek M, Klein ML. Molecular Dynamics Study of a Lipid−DNA Complex The Journal of Physical Chemistry B. 103: 10075-10080. DOI: 10.1021/Jp9927496 |
0.514 |
|
| 1999 |
Tarek M, Tobias DJ. Environmental dependence of the dynamics of protein hydration water [10] Journal of the American Chemical Society. 121: 9740-9741. DOI: 10.1021/Ja990643I |
0.303 |
|
| 1998 |
Tu K, Tarek M, Klein ML, Scharf D. Effects of anesthetics on the structure of a phospholipid bilayer: molecular dynamics investigation of halothane in the hydrated liquid crystal phase of dipalmitoylphosphatidylcholine. Biophysical Journal. 75: 2123-34. PMID 9788906 DOI: 10.1016/S0006-3495(98)77655-6 |
0.529 |
|
| 1998 |
Bandyopadhyay S, Klein ML, Martyna GJ, Tarek M. Molecular dynamics studies of the hexagonal mesophase of sodium dodecylsulphate in aqueous solution Molecular Physics. 95: 377-384. DOI: 10.1080/00268979809483170 |
0.389 |
|
| 1998 |
Bandyopadhyay S, Shelley JC, Tarek M, Moore PB, Klein ML. Surfactant Aggregation at a Hydrophobic Surface The Journal of Physical Chemistry B. 102: 6318-6322. DOI: 10.1021/Jp982051C |
0.458 |
|
| 1998 |
Bandyopadhyay S, Tarek M, Klein ML. Computer simulation studies of amphiphilic interfaces Current Opinion in Colloid & Interface Science. 3: 242-246. DOI: 10.1016/S1359-0294(98)80067-8 |
0.456 |
|
| 1998 |
Tarek M, Bandyopadhyay S, Klein ML. Molecular dynamics studies of aqueous surfactants systems Journal of Molecular Liquids. 78: 1-6. DOI: 10.1016/S0167-7322(98)00078-6 |
0.463 |
|
| 1997 |
Tarek M, Klein ML. Molecular Dynamics Study of Two-Component Systems: The Shape and Surface Structure of Water/Ethanol Droplets The Journal of Physical Chemistry A. 101: 8639-8642. DOI: 10.1021/Jp972278S |
0.437 |
|
| 1996 |
Tarek M, Tobias DJ, Klein ML. Molecular dynamics investigation of the surface/bulk equilibrium in an ethanol-water solution Journal of the Chemical Society - Faraday Transactions. 92: 559-563. DOI: 10.1039/Ft9969200559 |
0.442 |
|
| 1996 |
Tarek M, Tobias DJ, Klein ML. Molecular dynamics investigation of an ethanol-water solution Physica a: Statistical Mechanics and Its Applications. 231: 117-122. DOI: 10.1016/0378-4371(95)00450-5 |
0.422 |
|
| 1995 |
Tarek M, Tobias DJ, Klein ML. Molecular Dynamics Simulation of Tetradecyltrimethylammonium Bromide Monolayers at the Air/Water Interface The Journal of Physical Chemistry. 99: 1393-1402. DOI: 10.1021/J100005A006 |
0.476 |
|
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