Xin Liu - Publications

Affiliations: 
BGI Genomics 

108 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Liu Y, Wang S, Li L, Yang T, Dong S, Wei T, Wu S, Liu Y, Gong Y, Feng X, Ma J, Chang G, Huang J, Yang Y, Wang H, ... ... Liu X, et al. The Cycas genome and the early evolution of seed plants. Nature Plants. PMID 35437001 DOI: 10.1038/s41477-022-01129-7  0.319
2021 Guo X, Fang D, Sahu SK, Yang S, Guang X, Folk R, Smith SA, Chanderbali AS, Chen S, Liu M, Yang T, Zhang S, Liu X, Xu X, Soltis PS, et al. Chloranthus genome provides insights into the early diversification of angiosperms. Nature Communications. 12: 6930. PMID 34836973 DOI: 10.1038/s41467-021-26922-4  0.362
2021 Varshney RK, Roorkiwal M, Sun S, Bajaj P, Chitikineni A, Thudi M, Singh NP, Du X, Upadhyaya HD, Khan AW, Wang Y, Garg V, Fan G, Cowling WA, Crossa J, ... ... Liu X, et al. A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature. PMID 34759320 DOI: 10.1038/s41586-021-04066-1  0.366
2021 Tian R, Han K, Geng Y, Yang C, Guo H, Shi C, Xu S, Yang G, Zhou X, Gladyshev VN, Liu X, Chopin LK, Fisher DO, Baker AM, Leiner NO, et al. A chromosome-level genome of the agile gracile mouse opossum (Gracilinanus Agilis). Genome Biology and Evolution. PMID 34247236 DOI: 10.1093/gbe/evab162  0.332
2021 Wei T, van Treuren R, Liu X, Zhang Z, Chen J, Liu Y, Dong S, Sun P, Yang T, Lan T, Wang X, Xiong Z, Liu Y, Wei J, Lu H, ... ... Liu X, et al. Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce. Nature Genetics. PMID 33846635 DOI: 10.1038/s41588-021-00831-0  0.343
2021 Wang K, Wang J, Zhu C, Yang L, Ren Y, Ruan J, Fan G, Hu J, Xu W, Bi X, Zhu Y, Song Y, Chen H, Ma T, Zhao R, ... ... Liu X, et al. African lungfish genome sheds light on the vertebrate water-to-land transition. Cell. PMID 33545087 DOI: 10.1016/j.cell.2021.01.047  0.322
2020 Fan Y, Sahu SK, Yang T, Mu W, Wei J, Cheng L, Yang J, Mu R, Liu J, Zhao J, Zhao Y, Xu X, Liu X, Liu H. Dissecting the genome of star fruit (Averrhoa carambola L.). Horticulture Research. 7: 94. PMID 34059631 DOI: 10.1038/s41438-020-0306-4  0.32
2020 Lv M, Zhang Y, Liu K, Li C, Wang J, Fan G, Liu X, Yang H, Liu C, Mahboob S, Liu J, Shao C. A Chromosome-Level Genome Assembly of the Anglerfish . Frontiers in Genetics. 11: 581161. PMID 33329719 DOI: 10.3389/fgene.2020.581161  0.324
2020 Hao S, Han K, Meng L, Huang X, Cao W, Shi C, Zhang M, Wang Y, Liu Q, Zhang Y, Sun H, Seim I, Xu X, Liu X, Fan G. African Arowana Genome Provides Insights on Ancient Teleost Evolution. Iscience. 23: 101662. PMID 33134892 DOI: 10.1016/j.isci.2020.101662  0.34
2020 Fan G, Liu X, Sun S, Shi C, Du X, Han K, Yang B, Fu Y, Liu M, Seim I, Zhang H, Xu Q, Wang J, Su X, Shao L, ... ... Liu X, et al. The Chromosome Level Genome and Genome-wide Association Study for the Agronomic Traits of . Iscience. 23: 101538. PMID 33083766 DOI: 10.1016/J.Isci.2020.101538  0.548
2020 Zhu T, Li Y, Pang Y, Han Y, Li J, Wang Z, Liu X, Li H, Hua Y, Jiang H, Teng H, Quan J, Liu Y, Geng M, Li M, et al. Chromosome-level genome assembly of Lethenteron reissneri provides insights into lamprey evolution. Molecular Ecology Resources. PMID 33053263 DOI: 10.1111/1755-0998.13279  0.344
2020 Han K, Shi C, Li L, Seim I, Lee SM, Xu X, Yang H, Fan G, Liu X. Lineage-specific evolution of mangrove plastid genomes. The Plant Genome. 13: e20019. PMID 33016609 DOI: 10.1002/Tpg2.20019  0.462
2020 Du Z, Kuang S, Li Y, Han P, Liu J, Wang Z, Huang Y, Guan Y, Xu X, Liu X, Banerjee S, Pan S. Family-Based Whole Genome Sequencing Identified Novel Variants in ABCA5 Gene in a Patient with Idiopathic Ventricular Tachycardia. Pediatric Cardiology. PMID 32939586 DOI: 10.1007/S00246-020-02446-4  0.36
2020 Xu M, Guo L, Gu S, Wang O, Zhang R, Peters BA, Fan G, Liu X, Xu X, Deng L, Zhang Y. TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads. Gigascience. 9. PMID 32893860 DOI: 10.1093/Gigascience/Giaa094  0.414
2020 Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, ... ... Liu X, et al. Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K). Gigascience. 9. PMID 32810278 DOI: 10.1093/Gigascience/Giaa080  0.333
2020 Li L, Wang S, Wang H, Sahu SK, Marin B, Li H, Xu Y, Liang H, Li Z, Cheng S, Reder T, Çebi Z, Wittek S, Petersen M, Melkonian B, ... ... Liu X, et al. Author Correction: The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution. PMID 32678322 DOI: 10.1038/S41559-020-1268-5  0.328
2020 Li L, Wang S, Wang H, Sahu SK, Marin B, Li H, Xu Y, Liang H, Li Z, Cheng S, Reder T, Çebi Z, Wittek S, Petersen M, Melkonian B, ... ... Liu X, et al. The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution. PMID 32572216 DOI: 10.1038/S41559-020-1221-7  0.394
2020 Fan Y, Sahu SK, Yang T, Mu W, Wei J, Cheng L, Yang J, Mu R, Liu J, Zhao J, Zhao Y, Xu X, Liu X, Liu H. Dissecting the genome of star fruit ( L.). Horticulture Research. 7: 94. PMID 32528706 DOI: 10.1038/S41438-020-0306-4  0.391
2020 Shi C, Han K, Li L, Seim I, Lee SM, Xu X, Yang H, Fan G, Liu X. Complete Chloroplast Genomes of 14 Mangroves: Phylogenetic and Comparative Genomic Analyses. Biomed Research International. 2020: 8731857. PMID 32462024 DOI: 10.1155/2020/8731857  0.413
2020 Sun S, Wang Y, Zeng W, Du X, Li L, Hong X, Huang X, Zhang H, Zhang M, Fan G, Liu X, Liu S. The genome of Mekong tiger perch (Datnioides undecimradiatus) provides insights into the phylogenetic position of Lobotiformes and biological conservation. Scientific Reports. 10: 8164. PMID 32424221 DOI: 10.1038/S41598-020-64398-2  0.416
2020 Yu J, Xiang X, Huang J, Liang X, Pan X, Dong Z, Petersen TS, Qu K, Yang L, Zhao X, Li S, Zheng T, Xu Z, Liu C, Han P, ... ... Liu X, et al. Haplotyping by CRISPR-mediated DNA circularization (CRISPR-hapC) broadens allele-specific gene editing. Nucleic Acids Research. PMID 31943080 DOI: 10.1093/Nar/Gkz1233  0.306
2020 Sinha P, Singh VK, Saxena RK, Kale SM, Li Y, Garg V, Tang M, Khan AW, Kim KD, Chitikineni A, Saxena KB, Sameer Kumar CV, Liu X, Xu X, Jackson S, et al. Genome-wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal. PMID 31925873 DOI: 10.1111/Pbi.13333  0.3
2019 Sahu SK, Liu M, Yssel A, Kariba R, Muthemba S, Jiang S, Song B, Hendre PS, Muchugi A, Jamnadass R, Kao SM, Featherston J, Zerega NJC, Xu X, Yang H, ... ... Liu X, et al. Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis). Genes. 11. PMID 31878322 DOI: 10.3390/Genes11010027  0.39
2019 Peng L, Li L, Liu X, Chen J, Shi C, Guo W, Xu Q, Fan G, Liu X, Li D. Chromosome-Level Comprehensive Genome of Mangrove Sediment-Derived Fungus HXQ-H-1. Journal of Fungi (Basel, Switzerland). 6. PMID 31878043 DOI: 10.3390/Jof6010007  0.386
2019 Chen X, Fang D, Wu C, Liu B, Liu Y, Sahu SK, Song B, Yang S, Yang T, Wei J, Wang X, Zhang W, Xu Q, Wang H, Yuan L, ... ... Liu X, et al. Comparative plastome analysis of root- and stem-feeding parasites of Santalales untangle the footprints of feeding mode and lifestyle transitions. Genome Biology and Evolution. PMID 31845987 DOI: 10.1093/Gbe/Evz271  0.33
2019 Wang S, Li L, Li H, Sahu SK, Wang H, Xu Y, Xian W, Song B, Liang H, Cheng S, Chang Y, Song Y, Çebi Z, Wittek S, Reder T, ... ... Liu X, et al. Genomes of early-diverging streptophyte algae shed light on plant terrestrialization. Nature Plants. PMID 31844283 DOI: 10.1038/S41477-019-0560-3  0.403
2019 Liu J, Shi C, Shi CC, Li W, Zhang QJ, Zhang Y, Li K, Lu HF, Shi C, Zhu ST, Xiao ZY, Nan H, Yue Y, Zhu XG, Wu Y, ... ... Liu X, et al. The Chromosome-based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis. Molecular Plant. PMID 31838037 DOI: 10.1016/J.Molp.2019.10.017  0.41
2019 Agarwal G, Clevenger J, Kale SM, Wang H, Pandey MK, Choudhary D, Yuan M, Wang X, Culbreath AK, Holbrook CC, Liu X, Varshney RK, Guo B. A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports. 9: 18246. PMID 31796847 DOI: 10.1038/S41598-019-54747-1  0.305
2019 Cheng S, Xian W, Fu Y, Marin B, Keller J, Wu T, Sun W, Li X, Xu Y, Zhang Y, Wittek S, Reder T, Günther G, Gontcharov A, Wang S, ... ... Liu X, et al. Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution. Cell. 179: 1057-1067.e14. PMID 31730849 DOI: 10.1016/J.Cell.2019.10.019  0.371
2019 Pettersson ME, Rochus CM, Han F, Chen J, Hill J, Wallerman O, Fan G, Hong X, Xu Q, Zhang H, Liu S, Liu X, Haggerty L, Hunt T, Martin FJ, et al. A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection. Genome Research. PMID 31649060 DOI: 10.1101/Gr.253435.119  0.347
2019 Song B, Song Y, Fu Y, Kizito EB, Kamenya SN, Kabod PN, Liu H, Muthemba S, Kariba R, Njuguna J, Maina S, Stomeo F, Djikeng A, Hendre PS, Chen X, ... ... Liu X, et al. Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome. Gigascience. 8. PMID 31574156 DOI: 10.1093/Gigascience/Giz115  0.378
2019 Zhao YP, Fan G, Yin PP, Sun S, Li N, Hong X, Hu G, Zhang H, Zhang FM, Han JD, Hao YJ, Xu Q, Yang X, Xia W, Chen W, ... ... Liu X, et al. Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil. Nature Communications. 10: 4201. PMID 31519986 DOI: 10.1038/S41467-019-12133-5  0.552
2019 Xu Y, Wang S, Li L, Sahu SK, Petersen M, Liu X, Melkonian M, Zhang G, Liu H. Molecular evidence for origin, diversification and ancient gene duplication of plant subtilases (SBTs). Scientific Reports. 9: 12485. PMID 31462749 DOI: 10.1038/S41598-019-48664-6  0.348
2019 Dong Y, Chen S, Cheng S, Zhou W, Ma Q, Chen Z, Fu CX, Liu X, Zhao YP, Soltis PS, Wong GK, Soltis DE, Xiang J. Natural selection and repeated patterns of molecular evolution following allopatric divergence. Elife. 8. PMID 31373555 DOI: 10.7554/Elife.45199  0.543
2019 Liang H, Wei T, Xu Y, Li L, Kumar Sahu S, Wang H, Li H, Fu X, Zhang G, Melkonian M, Liu X, Wang S, Liu H. Phylogenomics Provides New Insights into Gains and Losses of Selenoproteins among Archaeplastida. International Journal of Molecular Sciences. 20. PMID 31226841 DOI: 10.3390/Ijms20123020  0.384
2019 Ershov NI, Mordvinov VA, Prokhortchouk EB, Pakharukova MY, Gunbin KV, Ustyantsev K, Genaev MA, Blinov AG, Mazur A, Boulygina E, Tsygankova S, Khrameeva E, Chekanov N, Fan G, Xiao A, ... ... Liu X, et al. New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes. Bmc Genomics. 20: 399. PMID 31117933 DOI: 10.1186/S12864-019-5752-8  0.327
2019 He Y, Chang Y, Bao L, Yu M, Li R, Niu J, Fan G, Song W, Seim I, Qin Y, Li X, Liu J, Kong X, Peng M, Sun M, ... ... Liu X, ... ... Liu X, et al. A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth. Molecular Ecology Resources. PMID 31077549 DOI: 10.1111/1755-0998.13034  0.353
2019 Hendre PS, Muthemba S, Kariba R, Muchugi A, Fu Y, Chang Y, Song B, Liu H, Liu M, Liao X, Sahu SK, Wang S, Li L, Lu H, Peng S, ... ... Liu X, et al. African Orphan Crops Consortium (AOCC): status of developing genomic resources for African orphan crops. Planta. PMID 31073657 DOI: 10.1007/S00425-019-03156-9  0.361
2019 Varshney RK, Thudi M, Roorkiwal M, He W, Upadhyaya HD, Yang W, Bajaj P, Cubry P, Rathore A, Jian J, Doddamani D, Khan AW, Garg V, Chitikineni A, Xu D, ... ... Liu X, et al. Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics. PMID 31036963 DOI: 10.1038/S41588-019-0401-3  0.394
2019 Iqbal N, Liu X, Yang T, Huang Z, Hanif Q, Asif M, Khan QM, Mansoor S. Genomic variants identified from whole-genome resequencing of indicine cattle breeds from Pakistan. Plos One. 14: e0215065. PMID 30973947 DOI: 10.1371/Journal.Pone.0215065  0.392
2019 Lan T, Lin H, Zhu W, Tellier LCAM, Yang M, Liu X, Wang J, Wang J, Yang H, Xu X, Guo X. Correction to: Deep whole-genome sequencing of 90 Han Chinese Genomes. Gigascience. 8. PMID 30801124 DOI: 10.1093/Gigascience/Giz001  0.369
2019 Fan G, Zhang Y, Liu X, Wang J, Sun Z, Sun S, Zhang H, Chen J, Lv M, Han K, Tan X, Hu J, Guan R, Fu Y, Liu S, ... ... Liu X, et al. The first chromosome-level genome for a marine mammal as a resource to study ecology and evolution. Molecular Ecology Resources. PMID 30735609 DOI: 10.1111/1755-0998.13003  0.333
2019 Zou Y, Xue W, Luo G, Deng Z, Qin P, Guo R, Sun H, Xia Y, Liang S, Dai Y, Wan D, Jiang R, Su L, Feng Q, Jie Z, ... ... Liu X, et al. 1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses. Nature Biotechnology. 37: 179-185. PMID 30718868 DOI: 10.1038/S41587-018-0008-8  0.325
2019 Liu H, Wei J, Yang T, Mu W, Song B, Yang T, Fu Y, Wang X, Hu G, Li W, Zhou H, Chang Y, Chen X, Chen H, Cheng L, ... ... Liu X, et al. Molecular digitization of a botanical garden: high-depth whole genome sequencing of 689 vascular plant species from the Ruili Botanical Garden. Gigascience. PMID 30689836 DOI: 10.1093/Gigascience/Giz007  0.321
2019 Dong Y, Chen S, Cheng S, Zhou W, Ma Q, Chen Z, Fu C, Liu X, Zhao Y, Soltis PS, Wong GK, Soltis DE, Xiang Q. Author response: Natural selection and repeated patterns of molecular evolution following allopatric divergence Elife. DOI: 10.7554/Elife.45199.057  0.505
2019 Mu W, Yang T, Liu X. The complete plastid genomes of four species from Brassicales Mitochondrial Dna Part B. 4: 124-125. DOI: 10.1080/23802359.2018.1536480  0.357
2018 Gong L, Fan G, Ren Y, Chen Y, Qiu Q, Liu L, Qin Y, Liu B, Jiang L, Li H, Zeng Y, Gao Q, Zhang C, Wang Z, Jiang H, ... ... Liu X, et al. Chromosomal level reference genome of Tachypleus tridentatus provides insights into evolution and adaptation of horseshoe crabs. Molecular Ecology Resources. PMID 30592378 DOI: 10.1111/1755-0998.12988  0.355
2018 Chang Y, Liu H, Liu M, Liao X, Sahu SK, Fu Y, Song B, Cheng S, Kariba R, Muthemba S, Hendre PS, Mayes S, Ho WK, Kendabie P, Wang S, ... ... Liu X, et al. The draft genomes of five agriculturally important African orphan crops. Gigascience. PMID 30535374 DOI: 10.1093/Gigascience/Giy152  0.397
2018 Huang J, Liang X, Xuan Y, Geng C, Li Y, Lu H, Qu S, Mei X, Chen H, Yu T, Sun N, Rao J, Wang J, Zhang W, Chen Y, ... ... Liu X, et al. Erratum to: A reference human genome dataset of the BGISEQ-500 sequencer. Gigascience. 7. PMID 30500904 DOI: 10.1093/Gigascience/Giy144  0.406
2018 Bai H, Guo X, Narisu N, Lan T, Wu Q, Xing Y, Zhang Y, Bond SR, Pei Z, Zhang Y, Zhang D, Jirimutu J, Zhang D, Yang X, Morigenbatu M, ... ... Liu X, et al. Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia. Nature Genetics. PMID 30397334 DOI: 10.1038/S41588-018-0250-5  0.379
2018 Shao C, Li C, Wang N, Qin Y, Xu W, Liu Q, Zhou Q, Zhao Y, Li X, Liu S, Chen X, Mahboob S, Liu X, Chen S. Chromosome-level genome assembly of the spotted sea bass, Lateolabrax maculatus. Gigascience. PMID 30239684 DOI: 10.1093/Gigascience/Giy114  0.408
2018 Zhao H, Wang S, Wang J, Chen C, Hao S, Chen L, Fei B, Han K, Li R, Shi C, Sun H, Wang S, Xu H, Yang K, Xu X, ... ... Liu X, et al. The chromosome-level genome assemblies of two rattans (Calamus simplicifolius and Daemonorops jenkinsiana). Gigascience. PMID 30101322 DOI: 10.1093/Gigascience/Giy097  0.413
2018 Burgarella C, Cubry P, Kane NA, Varshney RK, Mariac C, Liu X, Shi C, Thudi M, Couderc M, Xu X, Chitikineni A, Scarcelli N, Barnaud A, Rhoné B, Dupuy C, et al. A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology & Evolution. PMID 30082736 DOI: 10.1038/S41559-018-0643-Y  0.44
2018 Fan G, Chan J, Ma K, Yang B, Zhang H, Yang X, Shi C, Law H, Ren Z, Xu Q, Liu Q, Wang J, Chen W, Shao L, Gonçalves D, ... ... Liu X, et al. Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression. Gigascience. PMID 30010754 DOI: 10.1093/Gigascience/Giy087  0.409
2018 Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, ... ... Liu X, et al. Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature Plants. PMID 29967517 DOI: 10.1038/S41477-018-0188-8  0.449
2018 Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, et al. Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. Science (New York, N.Y.). PMID 29794220 DOI: 10.1126/Science.Aat1743  0.386
2018 Wu Y, Zhang Y, Hou Z, Fan G, Pi J, Sun S, Chen J, Liu H, Du X, Shen J, Hu G, Chen W, Pan A, Yin P, Chen X, ... ... Liu X, et al. Population genomic data reveal genes related to important traits of quail. Gigascience. PMID 29762663 DOI: 10.1093/Gigascience/Giy049  0.459
2018 Zhang Q, Zhang H, Sun L, Fan G, Ye M, Jiang L, Liu X, Ma K, Shi C, Bao F, Guan R, Han Y, Fu Y, Pan H, Chen Z, et al. The genetic architecture of floral traits in the woody plant Prunus mume. Nature Communications. 9: 1702. PMID 29703940 DOI: 10.1038/S41467-018-04093-Z  0.414
2018 Agarwal G, Clevenger J, Pandey MK, Wang H, Shasidhar Y, Chu Y, Fountain JC, Choudhary D, Culbreath AK, Liu X, Huang G, Wang X, Deshmukh R, Holbrook CC, Bertioli DJ, et al. High-density genetic map using whole-genome re-sequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal. PMID 29637729 DOI: 10.1111/Pbi.12930  0.34
2018 Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, ... Liu X, et al. 10KP: A phylodiverse genome sequencing plan. Gigascience. 7: 1-9. PMID 29618049 DOI: 10.1093/Gigascience/Giy013  0.431
2017 Lan T, Lin H, Zhu W, Laurent TCAM, Yang M, Liu X, Wang J, Wang J, Yang H, Xu X, Guo X. Deep whole-genome sequencing of 90 Han Chinese genomes. Gigascience. 6: 1-7. PMID 28938720 DOI: 10.1093/Gigascience/Gix067  0.423
2017 Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, ... ... Liu X, et al. Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology. PMID 28922347 DOI: 10.1038/Nbt.3943  0.441
2017 Song B, Morse D, Song Y, Fu Y, Lin X, Wang W, Cheng S, Chen W, Liu X, Lin S. Comparative Genomics Reveals Two Major Bouts of Gene Retroposition Coinciding with Crucial Periods of Symbiodinium Evolution. Genome Biology and Evolution. 9: 2037-2047. PMID 28903461 DOI: 10.1093/Gbe/Evx144  0.461
2017 Du X, Fan G, Jiao Y, Zhang H, Guo X, Huang R, Zheng Z, Bian C, Deng Y, Wang Q, Wang Z, Liang X, Liang H, Shi C, Zhao X, ... ... Liu X, et al. The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization. Gigascience. 6: 1-12. PMID 28873964 DOI: 10.1093/Gigascience/Gix059  0.321
2017 Sun F, Fan G, Hu Q, Zhou Y, Guan M, Tong C, Li J, Du D, Qi C, Jiang L, Liu W, Huang S, Chen W, Yu J, Mei D, ... ... Liu X, et al. The high-quality genome of Brassica napus cultivar 'ZS11' reveals the introgression history in semi-winter morphotype. The Plant Journal : For Cell and Molecular Biology. PMID 28849613 DOI: 10.1111/Tpj.13669  0.448
2017 Qiao X, Su R, Wang Y, Wang R, Yang T, Li X, Chen W, He S, Jiang Y, Xu Q, Wan W, Zhang Y, Zhang W, Chen J, Liu B, ... Liu X, et al. Genome-wide Target Enrichment-aided Chip Design: a 66 K SNP Chip for Cashmere Goat. Scientific Reports. 7: 8621. PMID 28819310 DOI: 10.1038/S41598-017-09285-Z  0.342
2017 Zhao H, Zhao S, Fei B, Liu H, Yang H, Dai H, Wang D, Jin W, Tang F, Gao Q, Xun H, Wang Y, Qi L, Yue X, ... ... Liu X, et al. Announcing the Genome Atlas of Bamboo and Rattan (GABR) project: promoting research in evolution and in economically and ecologically beneficial plants. Gigascience. PMID 28637269 DOI: 10.1093/Gigascience/Gix046  0.43
2017 Fu Y, Li L, Hao S, Guan R, Fan G, Shi C, Wan H, Chen W, Zhang H, Liu G, Wang J, Ma L, You J, Ni X, Yue Z, ... ... Liu X, et al. Draft genome sequence of the Tibetan medicinal herb, Rhodiola crenulata. Gigascience. PMID 28475810 DOI: 10.1093/Gigascience/Gix033  0.379
2017 Huang J, Liang X, Xuan Y, Geng C, Li Y, Lu H, Qu S, Mei X, Chen H, Yu T, Sun N, Rao J, Wang J, Zhang W, Chen Y, ... ... Liu X, et al. A reference human genome dataset of the BGISEQ-500 sequencer. Gigascience. PMID 28379488 DOI: 10.1093/Gigascience/Gix024  0.386
2017 Yu Y, Xiang Q, Manos PS, Soltis DE, Soltis PS, Song BH, Cheng S, Liu X, Wong G. Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences. Plos One. 12: e0171361. PMID 28225773 DOI: 10.1371/Journal.Pone.0171361  0.457
2017 Xu Y, Sun Y, Ma J, Zhou S, Fang W, Ye J, Tan L, Ji J, Luo D, Li L, Li J, Fang C, Pei N, Shi S, Liu X, et al. A novel Enterovirus 96 circulating in China causes hand, foot, and mouth disease. Virus Genes. PMID 28176160 DOI: 10.1007/S11262-017-1431-5  0.311
2016 Thudi M, Chitikineni A, Liu X, He W, Roorkiwal M, Yang W, Jian J, Doddamani D, Gaur PM, Rathore A, Samineni S, Saxena RK, Xu D, Singh NP, Chaturvedi SK, et al. Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports. 6: 38636. PMID 27982107 DOI: 10.1038/Srep38636  0.39
2016 Guan R, Zhao Y, Zhang H, Fan G, Liu X, Zhou W, Shi C, Wang J, Liu W, Liang X, Fu Y, Ma K, Zhao L, Zhang F, Lu Z, et al. Draft genome of the living fossil Ginkgo biloba. Gigascience. 5: 49. PMID 27871309 DOI: 10.1186/S13742-016-0154-1  0.549
2016 Zhao Y, Huang J, Wang Z, Jing S, Wang Y, Ouyang Y, Cai B, Xin XF, Liu X, Zhang C, Pan Y, Ma R, Li Q, Jiang W, Zeng Y, et al. Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791169 DOI: 10.1073/Pnas.1614862113  0.333
2016 Xiao L, Estellé J, Kiilerich P, Ramayo-Caldas Y, Xia Z, Feng Q, Liang S, Pedersen AØ, Kjeldsen NJ, Liu C, Maguin E, Doré J, Pons N, Le Chatelier E, Prifti E, ... ... Liu X, et al. A reference gene catalogue of the pig gut microbiome. Nature Microbiology. 1: 16161. PMID 27643971 DOI: 10.1038/Nmicrobiol.2016.161  0.362
2016 Martinez Barrio A, Lamichhaney S, Fan G, Rafati N, Pettersson M, Zhang H, Dainat J, Ekman D, Höppner M, Jern P, Martin M, Nystedt B, Liu X, Chen W, Liang X, et al. The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing. Elife. 5. PMID 27138043 DOI: 10.7554/Elife.12081  0.368
2016 Pei N, Ma J, Li L, Ji J, Li J, Deng J, Liu X. Complete Genome Sequence of a Salivirus in Respiratory Specimens from a Child with Adenovirus Infection. Genome Announcements. 4. PMID 27056215 DOI: 10.1128/Genomea.00159-16  0.347
2016 Valliyodan B, Dan Qiu, Patil G, Zeng P, Huang J, Dai L, Chen C, Li Y, Joshi T, Song L, Vuong TD, Musket TA, Xu D, Shannon JG, Shifeng C, ... Liu X, et al. Landscape of genomic diversity and trait discovery in soybean. Scientific Reports. 6: 23598. PMID 27029319 DOI: 10.1038/Srep23598  0.454
2016 Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, et al. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. PMID 26901068 DOI: 10.1038/Ng.3517  0.446
2016 Cheng S, Gutmann B, Zhong X, Ye Y, Fisher MF, Bai F, Castleden I, Song Y, Song B, Huang J, Liu X, Xu X, Lim BL, Bond CS, Yiu SM, et al. Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants. The Plant Journal : For Cell and Molecular Biology. PMID 26764122 DOI: 10.1111/Tpj.13121  0.316
2016 Barrio AM, Lamichhaney S, Fan G, Rafati N, Pettersson M, Zhang H, Dainat J, Ekman D, Höppner M, Jern P, Martin M, Nystedt B, Liu X, Chen W, Liang X, et al. Author response: The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing Elife. DOI: 10.7554/Elife.12081.037  0.417
2015 Lamichhaney S, Fan G, Widemo F, Gunnarsson U, Thalmann DS, Hoeppner MP, Kerje S, Gustafson U, Shi C, Zhang H, Chen W, Liang X, Huang L, Wang J, Liang E, ... ... Liu X, et al. Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax). Nature Genetics. PMID 26569123 DOI: 10.1038/Ng.3430  0.363
2015 Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, ... ... Liu X, et al. The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis. Science (New York, N.Y.). 350: 691-4. PMID 26542574 DOI: 10.1126/Science.Aad0408  0.425
2015 Li F, Fan G, Lu C, Xiao G, Zou C, Kohel RJ, Ma Z, Shang H, Ma X, Wu J, Liang X, Huang G, Percy RG, Liu K, Yang W, ... ... Liu X, et al. Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution. Nature Biotechnology. 33: 524-30. PMID 25893780 DOI: 10.1038/Nbt.3208  0.448
2015 Song B, Cheng S, Sun Y, Zhong X, Jin J, Guan R, Murphy RW, Che J, Zhang Y, Liu X. A genome draft of the legless anguid lizard, Ophisaurus gracilis. Gigascience. 4: 17. PMID 25859342 DOI: 10.1186/S13742-015-0056-7  0.454
2015 Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW, Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao YY, Pan ZJ, et al. Corrigendum: The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics. 47: 304. PMID 25711871 DOI: 10.1038/Ng0315-304A  0.349
2015 Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW, Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao YY, Pan ZJ, et al. The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics. 47: 65-72. PMID 25420146 DOI: 10.1038/Ng.3149  0.433
2014 You X, Bian C, Zan Q, Xu X, Liu X, Chen J, Wang J, Qiu Y, Li W, Zhang X, Sun Y, Chen S, Hong W, Li Y, Cheng S, et al. Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes. Nature Communications. 5: 5594. PMID 25463417 DOI: 10.1038/Ncomms6594  0.417
2014 Cao K, Zheng Z, Wang L, Liu X, Zhu G, Fang W, Cheng S, Zeng P, Chen C, Wang X, Xie M, Zhong X, Wang X, Zhao P, Bian C, et al. Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops. Genome Biology. 15: 415. PMID 25079967 DOI: 10.1186/S13059-014-0415-1  0.399
2014 Qi X, Li MW, Xie M, Liu X, Ni M, Shao G, Song C, Kay-Yuen Yim A, Tao Y, Wong FL, Isobe S, Wong CF, Wong KS, Xu C, Li C, ... ... Liu X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nature Communications. 5: 4340. PMID 25004933 DOI: 10.1038/Ncomms5340  0.44
2014 Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, ... ... Liu X, et al. The sheep genome illuminates biology of the rumen and lipid metabolism. Science (New York, N.Y.). 344: 1168-73. PMID 24904168 DOI: 10.1126/Science.1252806  0.329
2014 Cao K, Zheng Z, Wang L, Liu X, Zhu G, Fang W, Cheng S, Zeng P, Chen C, Wang X, Xie M, Zhong X, Wang X, Zhao P, Bian C, et al. Comparative population genomics reveals the domestication history of the peach, Genome Biology. 15: 415. DOI: 10.1186/Preaccept-1190140987122406  0.396
2013 Zhou X, Sun F, Xu S, Fan G, Zhu K, Liu X, Chen Y, Shi C, Yang Y, Huang Z, Chen J, Hou H, Guo X, Chen W, Chen Y, et al. Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations. Nature Communications. 4: 2708. PMID 24169659 DOI: 10.1038/Ncomms3708  0.452
2013 Qi J, Liu X, Shen D, Miao H, Xie B, Li X, Zeng P, Wang S, Shang Y, Gu X, Du Y, Li Y, Lin T, Yuan J, Yang X, et al. A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity. Nature Genetics. 45: 1510-5. PMID 24141363 DOI: 10.1038/Ng.2801  0.447
2013 Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, et al. The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers. The Plant Cell. 25: 2813-30. PMID 23983221 DOI: 10.1105/Tpc.113.113480  0.468
2013 Wang Y, Fan G, Liu Y, Sun F, Shi C, Liu X, Peng J, Chen W, Huang X, Cheng S, Liu Y, Liang X, Zhu H, Bian C, Zhong L, et al. The sacred lotus genome provides insights into the evolution of flowering plants. The Plant Journal : For Cell and Molecular Biology. 76: 557-67. PMID 23952714 DOI: 10.1111/Tpj.12313  0.466
2013 Lewis NE, Liu X, Li Y, Nagarajan H, Yerganian G, O'Brien E, Bordbar A, Roth AM, Rosenbloom J, Bian C, Xie M, Chen W, Li N, Baycin-Hizal D, Latif H, et al. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nature Biotechnology. 31: 759-65. PMID 23873082 DOI: 10.1038/Nbt.2624  0.422
2013 Lyu J, Zhang S, Dong Y, He W, Zhang J, Deng X, Zhang Y, Li X, Li B, Huang W, Wan W, Yu Y, Li Q, Li J, Liu X, et al. Analysis of elite variety tag SNPs reveals an important allele in upland rice. Nature Communications. 4: 2138. PMID 23828614 DOI: 10.1038/Ncomms3138  0.334
2013 Dong Y, Xie M, Jiang Y, Xiao N, Du X, Zhang W, Tosser-Klopp G, Wang J, Yang S, Liang J, Chen W, Chen J, Zeng P, Hou Y, Bian C, ... ... Liu X, et al. Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nature Biotechnology. 31: 135-41. PMID 23263233 DOI: 10.1038/Nbt.2478  0.413
2012 Tian Z, Zhao M, She M, Du J, Cannon SB, Liu X, Xu X, Qi X, Li MW, Lam HM, Ma J. Genome-wide characterization of nonreference transposons reveals evolutionary propensities of transposons in soybean. The Plant Cell. 24: 4422-36. PMID 23175746 DOI: 10.1105/Tpc.112.103630  0.402
2012 Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, ... ... Liu X, et al. Maize HapMap2 identifies extant variation from a genome in flux. Nature Genetics. 44: 803-7. PMID 22660545 DOI: 10.1038/Ng.2313  0.459
2012 Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S, Kaneko T, Nakamura Y, Shibata D, Aoki K, Egholm M, Knight J, Bogden R, Li C, Shuang Y, ... ... Liu X, et al. The tomato genome sequence provides insights into fleshy fruit evolution Nature. 485: 635-641. PMID 22660326 DOI: 10.1038/Nature11119  0.47
2012 Zhang G, Liu X, Quan Z, Cheng S, Xu X, Pan S, Xie M, Zeng P, Yue Z, Wang W, Tao Y, Bian C, Han C, Xia Q, Peng X, et al. Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nature Biotechnology. 30: 549-54. PMID 22580950 DOI: 10.1038/Nbt.2195  0.343
2012 Hou Y, Song L, Zhu P, Zhang B, Tao Y, Xu X, Li F, Wu K, Liang J, Shao D, Wu H, Ye X, Ye C, Wu R, Jian M, ... ... Liu X, et al. Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell. 148: 873-85. PMID 22385957 DOI: 10.1016/J.Cell.2012.02.028  0.376
2012 Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, et al. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nature Biotechnology. 30: 105-11. PMID 22158310 DOI: 10.1038/Nbt.2050  0.413
2011 Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan HC, et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology. 29: 735-41. PMID 21804562 DOI: 10.1038/Nbt.1932  0.426
2011 Lam H, Xu X, Liu X, Chen W, Yang G, Wong F, Li M, He W, Qin N, Wang B, Li J, Jian M, Wang J, Shao G, Wang J, et al. Addendum: Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection Nature Genetics. 43: 387-387. DOI: 10.1038/Ng0411-387  0.409
2010 Lam HM, Xu X, Liu X, Chen W, Yang G, Wong FL, Li MW, He W, Qin N, Wang B, Li J, Jian M, Wang J, Shao G, Wang J, et al. Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nature Genetics. 42: 1053-9. PMID 21076406 DOI: 10.1038/Ng.715  0.434
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