Year |
Citation |
Score |
2022 |
MacCarthy CM, Huertas J, Ortmeier C, Vom Bruch H, Tan DS, Reinke D, Sander A, Bergbrede T, Jauch R, Schöler HR, Cojocaru V. OCT4 interprets and enhances nucleosome flexibility. Nucleic Acids Research. PMID 36130732 DOI: 10.1093/nar/gkac755 |
0.329 |
|
2020 |
Huertas J, MacCarthy CM, Schöler HR, Cojocaru V. Nucleosomal DNA Dynamics Mediate Oct4 Pioneer Factor Binding. Biophysical Journal. PMID 32027821 DOI: 10.1016/J.Bpj.2019.12.038 |
0.43 |
|
2020 |
Öztürk MA, De M, Cojocaru V, Wade RC. Chromatosome Structure and Dynamics from Molecular Simulations. Annual Review of Physical Chemistry. PMID 32017651 DOI: 10.1146/Annurev-Physchem-071119-040043 |
0.642 |
|
2019 |
Viplav A, Saha T, Huertas J, Selenschik P, Ebrahimkutty MP, Grill D, Lehrich J, Hentschel A, Biasizzo M, Mengoni S, Ahrends R, Gerke V, Cojocaru V, Klingauf J, Galic M. ArhGEF37 assists Dynamin2 during Clathrin-mediated endocytosis. Journal of Cell Science. PMID 30926623 DOI: 10.1242/Jcs.226530 |
0.354 |
|
2018 |
Öztürk MA, Cojocaru V, Wade RC. Toward an Ensemble View of Chromatosome Structure: A Paradigm Shift from One to Many. Structure (London, England : 1993). PMID 29937356 DOI: 10.1016/J.Str.2018.05.009 |
0.63 |
|
2018 |
Öztürk MA, Cojocaru V, Wade RC. Dependence of Chromatosome Structure on Linker Histone Sequence and Posttranslational Modification. Biophysical Journal. PMID 29759374 DOI: 10.1016/J.Bpj.2018.04.034 |
0.652 |
|
2018 |
Wang X, Srivastava Y, Jankowski A, Malik V, Wei Y, Del Rosario RCH, Cojocaru V, Prabhakar S, Jauch R. DNA-mediated dimerization on a compact sequence signature controls enhancer engagement and regulation by FOXA1. Nucleic Acids Research. PMID 29669022 DOI: 10.1093/Nar/Gky259 |
0.409 |
|
2017 |
Hu C, Malik V, Chang YK, Veerapandian V, Srivastava Y, Huang YH, Hou L, Cojocaru V, Stormo GD, Jauch R. Coop-seq analysis demonstrates that Sox2 evokes latent specificities in the DNA recognition by Pax6. Journal of Molecular Biology. PMID 29050852 DOI: 10.1016/J.Jmb.2017.10.013 |
0.386 |
|
2016 |
Jerabek S, Ng CK, Wu G, Arauzo-Bravo MJ, Kim KP, Esch D, Malik V, Chen Y, Velychko S, MacCarthy CM, Yang X, Cojocaru V, Schöler HR, Jauch R. Changing POU dimerization preferences converts Oct6 into a pluripotency inducer. Embo Reports. PMID 28007765 DOI: 10.15252/Embr.201642958 |
0.34 |
|
2016 |
Öztürk MA, Pachov GV, Wade RC, Cojocaru V. Conformational selection and dynamic adaptation upon linker histone binding to the nucleosome. Nucleic Acids Research. PMID 27270081 DOI: 10.1093/Nar/Gkw514 |
0.639 |
|
2015 |
Yu X, Nandekar P, Mustafa G, Cojocaru V, Lepesheva GI, Wade RC. Ligand tunnels in T. brucei and human CYP51: Insights for parasite-specific drug design. Biochimica Et Biophysica Acta. 1860: 67-78. PMID 26493722 DOI: 10.1016/J.Bbagen.2015.10.015 |
0.65 |
|
2015 |
Tapia N, MacCarthy C, Esch D, Gabriele Marthaler A, Tiemann U, Araúzo-Bravo MJ, Jauch R, Cojocaru V, Schöler HR. Dissecting the role of distinct OCT4-SOX2 heterodimer configurations in pluripotency. Scientific Reports. 5: 13533. PMID 26314899 DOI: 10.1038/Srep13533 |
0.342 |
|
2015 |
Merino F, Bouvier B, Cojocaru V. Cooperative DNA Recognition Modulated by an Interplay between Protein-Protein Interactions and DNA-Mediated Allostery. Plos Computational Biology. 11: e1004287. PMID 26067358 DOI: 10.1371/Journal.Pcbi.1004287 |
0.357 |
|
2015 |
Yu X, Cojocaru V, Mustafa G, Salo-Ahen OM, Lepesheva GI, Wade RC. Dynamics of CYP51: implications for function and inhibitor design. Journal of Molecular Recognition : Jmr. 28: 59-73. PMID 25601796 DOI: 10.1002/Jmr.2412 |
0.708 |
|
2015 |
Narasimhan K, Pillay S, Huang YH, Jayabal S, Udayasuryan B, Veerapandian V, Kolatkar P, Cojocaru V, Pervushin K, Jauch R. DNA-mediated cooperativity facilitates the co-selection of cryptic enhancer sequences by SOX2 and PAX6 transcription factors. Nucleic Acids Research. 43: 1513-28. PMID 25578969 DOI: 10.1093/Nar/Gku1390 |
0.359 |
|
2014 |
Merino F, Ng CK, Veerapandian V, Schöler HR, Jauch R, Cojocaru V. Structural basis for the SOX-dependent genomic redistribution of OCT4 in stem cell differentiation. Structure (London, England : 1993). 22: 1274-86. PMID 25126959 DOI: 10.1016/J.Str.2014.06.014 |
0.394 |
|
2014 |
Jerabek S, Merino F, Schöler HR, Cojocaru V. OCT4: dynamic DNA binding pioneers stem cell pluripotency. Biochimica Et Biophysica Acta. 1839: 138-54. PMID 24145198 DOI: 10.1016/J.Bbagrm.2013.10.001 |
0.337 |
|
2013 |
Veith N, Feldman-Salit A, Cojocaru V, Henrich S, Kummer U, Wade RC. Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria. Plos Computational Biology. 9: e1003159. PMID 23946717 DOI: 10.1371/Journal.Pcbi.1003159 |
0.539 |
|
2013 |
Feldman-Salit A, Hering S, Messiha HL, Veith N, Cojocaru V, Sieg A, Westerhoff HV, Kreikemeyer B, Wade RC, Fiedler T. Regulation of the activity of lactate dehydrogenases from four lactic acid bacteria. The Journal of Biological Chemistry. 288: 21295-306. PMID 23720742 DOI: 10.1074/Jbc.M113.458265 |
0.518 |
|
2013 |
Yu X, Cojocaru V, Wade RC. Conformational diversity and ligand tunnels of mammalian cytochrome P450s. Biotechnology and Applied Biochemistry. 60: 134-45. PMID 23587001 DOI: 10.1002/Bab.1074 |
0.685 |
|
2013 |
Esch D, Vahokoski J, Groves MR, Pogenberg V, Cojocaru V, Vom Bruch H, Han D, Drexler HC, Araúzo-Bravo MJ, Ng CK, Jauch R, Wilmanns M, Schöler HR. A unique Oct4 interface is crucial for reprogramming to pluripotency. Nature Cell Biology. 15: 295-301. PMID 23376973 DOI: 10.1038/Ncb2680 |
0.387 |
|
2012 |
Cojocaru V, Winn PJ, Wade RC. Multiple, ligand-dependent routes from the active site of cytochrome P450 2C9. Current Drug Metabolism. 13: 143-54. PMID 22208529 DOI: 10.2174/138920012798918462 |
0.619 |
|
2011 |
Cojocaru V, Balali-Mood K, Sansom MS, Wade RC. Structure and dynamics of the membrane-bound cytochrome P450 2C9. Plos Computational Biology. 7: e1002152. PMID 21852944 DOI: 10.1371/Journal.Pcbi.1002152 |
0.576 |
|
2007 |
Cojocaru V, Winn PJ, Wade RC. The ins and outs of cytochrome P450s. Biochimica Et Biophysica Acta. 1770: 390-401. PMID 16920266 DOI: 10.1016/J.Bbagen.2006.07.005 |
0.551 |
|
2005 |
Cojocaru V, Klement R, Jovin TM. Loss of G-A base pairs is insufficient for achieving a large opening of U4 snRNA K-turn motif. Nucleic Acids Research. 33: 3435-46. PMID 15956103 DOI: 10.1093/Nar/Gki664 |
0.301 |
|
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