| Year |
Citation |
Score |
| 2024 |
An H, Pires JC, Conant GC. Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression. Plos Computational Biology. 20: e1011803. PMID 38227592 DOI: 10.1371/journal.pcbi.1011803 |
0.698 |
|
| 2023 |
Assis R, Conant G, Holland B, Liberles DA, O'Reilly MM, Wilson AE. Models for the retention of duplicate genes and their biological underpinnings. F1000research. 12: 1400. PMID 38173826 DOI: 10.12688/f1000research.141786.1 |
0.362 |
|
| 2023 |
Mabry ME, Abrahams RS, Al-Shehbaz IA, Baker WJ, Barak S, Barker MS, Barrett RL, Beric A, Bhattacharya S, Carey SB, Conant GC, Conran JG, Dassanayake M, Edger PP, Hall JC, et al. Complementing model species with model clades. The Plant Cell. PMID 37824826 DOI: 10.1093/plcell/koad260 |
0.733 |
|
| 2023 |
Siddiqui M, Conant GC. POInT: orthology prediction and synteny exploration for paleopolyploid genomes. Bmc Bioinformatics. 24: 174. PMID 37106333 DOI: 10.1186/s12859-023-05298-w |
0.325 |
|
| 2022 |
McRae L, Beric A, Conant GC. Hybridization order is not the driving factor behind biases in duplicate gene losses among the hexaploid Solanaceae. Proceedings. Biological Sciences. 289: 20221810. PMID 36285500 DOI: 10.1098/rspb.2022.1810 |
0.369 |
|
| 2022 |
Hao Y, Conant GC. POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes. Methods in Molecular Biology (Clifton, N.J.). 2512: 81-91. PMID 35818001 DOI: 10.1007/978-1-0716-2429-6_6 |
0.559 |
|
| 2022 |
Hao Y, Fleming J, Petterson J, Lyons E, Edger PP, Pires JC, Thorne JL, Conant GC. Convergent evolution of polyploid genomes from across the eukaryotic tree of life. G3 (Bethesda, Md.). PMID 35451464 DOI: 10.1093/g3journal/jkac094 |
0.773 |
|
| 2021 |
Washburn JD, Strable J, Dickinson P, Kothapalli SS, Brose JM, Covshoff S, Conant GC, Hibberd JM, Pires JC. Distinct C sub-types and C bundle sheath isolation in the Paniceae grasses. Plant Direct. 5: e373. PMID 34988355 DOI: 10.1002/pld3.373 |
0.641 |
|
| 2021 |
Beric A, Mabry ME, Harkess AE, Brose J, Schranz ME, Conant GC, Edger PP, Meyers BC, Pires JC. Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). G3 (Bethesda, Md.). PMID 33993297 DOI: 10.1093/g3journal/jkab140 |
0.72 |
|
| 2021 |
Hao Y, Mabry ME, Edger PP, Freeling M, Zheng C, Jin L, VanBuren R, Colle M, An H, Abrahams RS, Washburn JD, Qi X, Barry K, Daum C, Shu S, ... ... Conant GC, et al. The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome Research. PMID 33863805 DOI: 10.1101/gr.270033.120 |
0.79 |
|
| 2021 |
Qi X, An H, Hall TE, Di C, Blischak PD, McKibben MTW, Hao Y, Conant GC, Pires JC, Barker MS. Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. The New Phytologist. PMID 33452818 DOI: 10.1111/nph.17194 |
0.772 |
|
| 2020 |
Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, et al. Phylogeny and multiple independent whole-genome duplication events in the Brassicales. American Journal of Botany. PMID 32830865 DOI: 10.1002/Ajb2.1514 |
0.691 |
|
| 2020 |
Conant GC. The lasting after-effects of an ancient polyploidy on the genomes of teleosts. Plos One. 15: e0231356. PMID 32298330 DOI: 10.1371/journal.pone.0231356 |
0.362 |
|
| 2020 |
Hao Y, Lee HJ, Baraboo M, Burch K, Maurer T, Somarelli JA, Conant GC. Baby genomics: tracing the evolutionary changes that gave rise to placentation. Genome Biology and Evolution. PMID 32053193 DOI: 10.1093/Gbe/Evaa026 |
0.562 |
|
| 2019 |
Schoonmaker A, Hao Y, McK Bird DM, Conant GC. A Single, Shared Triploidy in Three Species of Parasitic Nematodes. G3 (Bethesda, Md.). PMID 31694855 DOI: 10.1534/G3.119.400650 |
0.557 |
|
| 2019 |
Osman EY, Bolding MR, Villalón E, Kaifer KA, Lorson ZC, Tisdale S, Hao Y, Conant GC, Pires JC, Pellizzoni L, Lorson CL. Functional characterization of SMN evolution in mouse models of SMA. Scientific Reports. 9: 9472. PMID 31263170 DOI: 10.1038/S41598-019-45822-8 |
0.712 |
|
| 2019 |
An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC. Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. Nature Communications. 10: 2878. PMID 31253789 DOI: 10.1038/S41467-019-10757-1 |
0.723 |
|
| 2018 |
Patil RD, Ellison MJ, Wolff SM, Shearer C, Wright AM, Cockrum RR, Austin KJ, Lamberson WR, Cammack KM, Conant GC. Poor feed efficiency in sheep is associated with several structural abnormalities in the community metabolic network of their ruminal microbes. Journal of Animal Science. PMID 29788417 DOI: 10.1093/jas/sky096 |
0.761 |
|
| 2018 |
Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses. Scientific Reports. 8: 7120. PMID 29720618 DOI: 10.1038/S41598-018-25620-4 |
0.668 |
|
| 2018 |
Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC. Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived. Genome Biology and Evolution. 10: 999-1011. PMID 29617811 DOI: 10.1093/Gbe/Evy061 |
0.787 |
|
| 2018 |
Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC. Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. Plos Genetics. 14: e1007267. PMID 29590103 DOI: 10.1371/Journal.Pgen.1007267 |
0.779 |
|
| 2018 |
Blischak PD, Mabry ME, Conant GC, Pires JC. Integrating Networks, Phylogenomics, and Population Genomics for the Study of Polyploidy Annual Review of Ecology, Evolution, and Systematics. 49: 253-278. DOI: 10.1146/Annurev-Ecolsys-121415-032302 |
0.755 |
|
| 2017 |
Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. Scientific Reports. 7: 13528. PMID 29051622 DOI: 10.1038/S41598-017-13236-Z |
0.729 |
|
| 2017 |
Wolff SM, Ellison MJ, Hao Y, Cockrum RR, Austin KJ, Baraboo M, Burch K, Lee HJ, Maurer T, Patil R, Ravelo A, Taxis TM, Truong H, Lamberson WR, Cammack KM, ... Conant GC, et al. Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome. Microbiome. 5: 60. PMID 28595639 DOI: 10.1186/S40168-017-0274-6 |
0.749 |
|
| 2016 |
Pires JC, Conant GC. Robust Yet Fragile: Expression Noise, Protein Misfolding, and Gene Dosage in the Evolution of Genomes. Annual Review of Genetics. PMID 27617972 DOI: 10.1146/Annurev-Genet-120215-035400 |
0.718 |
|
| 2016 |
Washburn JD, Bird KA, Conant GC, Pires JC. Convergent evolution and the origin of complex phenotypes in the age of systems biology International Journal of Plant Sciences. 177: 305-318. DOI: 10.1086/686009 |
0.735 |
|
| 2015 |
Taxis TM, Wolff S, Gregg SJ, Minton NO, Zhang C, Dai J, Schnabel RD, Taylor JF, Kerley MS, Pires JC, Lamberson WR, Conant GC. The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity. Nucleic Acids Research. PMID 26420832 DOI: 10.1093/Nar/Gkv973 |
0.779 |
|
| 2015 |
Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, ... ... Conant GC, et al. The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100883 DOI: 10.1073/Pnas.1503926112 |
0.811 |
|
| 2014 |
Conant GC. Comparative genomics as a time machine: how relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy. Molecular Biology and Evolution. 31: 3184-93. PMID 25158798 DOI: 10.1093/molbev/msu250 |
0.392 |
|
| 2014 |
Edger PP, Tang M, Bird KA, Mayfield DR, Conant G, Mummenhoff K, Koch MA, Pires JC. Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the Brassicaceae (mustards). Plos One. 9: e101341. PMID 24984034 DOI: 10.1371/Journal.Pone.0101341 |
0.719 |
|
| 2014 |
Conant GC, Birchler JA, Pires JC. Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time. Current Opinion in Plant Biology. 19: 91-8. PMID 24907529 DOI: 10.1016/J.Pbi.2014.05.008 |
0.742 |
|
| 2014 |
Zimmerman SW, Yi YJ, Sutovsky M, van Leeuwen FW, Conant G, Sutovsky P. Identification and characterization of RING-finger ubiquitin ligase UBR7 in mammalian spermatozoa. Cell and Tissue Research. 356: 261-78. PMID 24664117 DOI: 10.1007/S00441-014-1808-X |
0.313 |
|
| 2014 |
Bekaert M, Conant GC. Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks. Plos One. 9: e87115. PMID 24489850 DOI: 10.1371/Journal.Pone.0087115 |
0.701 |
|
| 2014 |
Ellison MJ, Conant GC, Cockrum RR, Austin KJ, Truong H, Becchi M, Lamberson WR, Cammack KM. Diet alters both the structure and taxonomy of the ovine gut microbial ecosystem. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 21: 115-25. PMID 24170804 DOI: 10.1093/Dnares/Dst044 |
0.584 |
|
| 2013 |
Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC. Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales. Seminars in Cell & Developmental Biology. 24: 320-31. PMID 23466286 DOI: 10.1016/J.Semcdb.2013.02.002 |
0.722 |
|
| 2013 |
Pérez-Bercoff A, Hudson CM, Conant GC. A Conserved Mammalian Protein Interaction Network Plos One. 8. PMID 23320073 DOI: 10.1371/Journal.Pone.0052581 |
0.767 |
|
| 2013 |
Conant G. Protein interactions and the spatial organization of cellular functions Journal of Proteomics & Bioinformatics. DOI: 10.4172/0974-276X.S1.067 |
0.4 |
|
| 2012 |
Bekaert M, Edger PP, Hudson CM, Pires JC, Conant GC. Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis. The New Phytologist. 196: 596-605. PMID 22943527 DOI: 10.1111/J.1469-8137.2012.04302.X |
0.774 |
|
| 2012 |
Huminiecki L, Conant GC. Polyploidy and the evolution of complex traits. International Journal of Evolutionary Biology. 2012: 292068. PMID 22900230 DOI: 10.1155/2012/292068 |
0.347 |
|
| 2012 |
Casola C, Conant GC, Hahn MW. Very low rate of gene conversion in the yeast genome. Molecular Biology and Evolution. 29: 3817-26. PMID 22844073 DOI: 10.1093/molbev/mss192 |
0.355 |
|
| 2012 |
Reneker J, Lyons E, Conant GC, Pires JC, Freeling M, Shyu CR, Korkin D. Long identical multispecies elements in plant and animal genomes. Proceedings of the National Academy of Sciences of the United States of America. 109: E1183-91. PMID 22496592 DOI: 10.1073/Pnas.1121356109 |
0.727 |
|
| 2012 |
Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC. Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics. 190: 1563-74. PMID 22308264 DOI: 10.1534/Genetics.111.137349 |
0.726 |
|
| 2012 |
Hudson CM, Conant GC. Yeast as a window into changes in genome complexity due to polyploidization Polyploidy and Genome Evolution. 2147483647: 293-308. DOI: 10.1007/978-3-642-31442-1_15 |
0.766 |
|
| 2011 |
Hudson CM, Puckett EE, Bekaert M, Pires JC, Conant GC. Selection for higher gene copy number after different types of plant gene duplications. Genome Biology and Evolution. 3: 1369-80. PMID 22056313 DOI: 10.1093/Gbe/Evr115 |
0.812 |
|
| 2011 |
Pérez-Bercoff Å, McLysaght A, Conant GC. Patterns of indirect protein interactions suggest a spatial organization to metabolism. Molecular Biosystems. 7: 3056-64. PMID 21881679 DOI: 10.1039/C1Mb05168G |
0.777 |
|
| 2011 |
Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, ... ... Conant G, et al. The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics. 43: 1035-9. PMID 21873998 DOI: 10.1038/Ng.919 |
0.756 |
|
| 2011 |
Bekaert M, Conant GC. Transcriptional robustness and protein interactions are associated in yeast. Bmc Systems Biology. 5: 62. PMID 21545728 DOI: 10.1186/1752-0509-5-62 |
0.612 |
|
| 2011 |
Bekaert M, Edger PP, Pires JC, Conant GC. Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. The Plant Cell. 23: 1719-28. PMID 21540436 DOI: 10.1105/Tpc.110.081281 |
0.817 |
|
| 2011 |
Hudson CM, Conant GC. Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes. Bmc Evolutionary Biology. 11: 89. PMID 21470417 DOI: 10.1186/1471-2148-11-89 |
0.762 |
|
| 2011 |
Bekaert M, Conant GC. Copy number alterations among mammalian enzymes cluster in the metabolic network. Molecular Biology and Evolution. 28: 1111-21. PMID 21051442 DOI: 10.1093/Molbev/Msq296 |
0.687 |
|
| 2010 |
Evangelisti AM, Conant GC. Nonrandom survival of gene conversions among yeast ribosomal proteins duplicated through genome doubling. Genome Biology and Evolution. 2: 826-34. PMID 20966100 DOI: 10.1093/Gbe/Evq067 |
0.357 |
|
| 2010 |
Conant GC. Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast. Proceedings. Biological Sciences. 277: 869-76. PMID 19923128 DOI: 10.1098/rspb.2009.1592 |
0.329 |
|
| 2009 |
Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen K, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, et al. Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Proceedings of the National Academy of Sciences of the United States of America. 106: 18644-9. PMID 19846765 DOI: 10.1073/Pnas.0904691106 |
0.691 |
|
| 2009 |
Conant GC, Stadler PF. Solvent exposure imparts similar selective pressures across a range of yeast proteins. Molecular Biology and Evolution. 26: 1155-61. PMID 19233963 DOI: 10.1093/Molbev/Msp031 |
0.368 |
|
| 2008 |
Conant GC, Wolfe KH. Turning a hobby into a job: how duplicated genes find new functions. Nature Reviews. Genetics. 9: 938-50. PMID 19015656 DOI: 10.1038/Nrg2482 |
0.589 |
|
| 2008 |
Conant GC, Wolfe KH. Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast. Genetics. 179: 1681-92. PMID 18562662 DOI: 10.1534/Genetics.107.074450 |
0.631 |
|
| 2008 |
Powell AJ, Conant GC, Brown DE, Carbone I, Dean RA. Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens. Bmc Genomics. 9: 147. PMID 18373860 DOI: 10.1186/1471-2164-9-147 |
0.334 |
|
| 2008 |
Conant GC, Wolfe KH. GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics (Oxford, England). 24: 861-2. PMID 18227121 DOI: 10.1093/Bioinformatics/Btm598 |
0.493 |
|
| 2008 |
Conant GC, Wolfe KH. Increased glycolytic flux as an outcome of whole-genome duplication in yeast (Molecular Systems Biology (2007) 3 (129) DOI: 10.1038/msb4100170) Molecular Systems Biology. 4. DOI: 10.1038/msb.2008.46 |
0.534 |
|
| 2007 |
Conant GC, Wolfe KH. Increased glycolytic flux as an outcome of whole-genome duplication in yeast. Molecular Systems Biology. 3: 129. PMID 17667951 DOI: 10.1038/Msb4100170 |
0.612 |
|
| 2007 |
Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH. Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proceedings of the National Academy of Sciences of the United States of America. 104: 8397-402. PMID 17494770 DOI: 10.1073/Pnas.0608218104 |
0.616 |
|
| 2007 |
Conant GC, Wagner GP, Stadler PF. Modeling amino acid substitution patterns in orthologous and paralogous genes. Molecular Phylogenetics and Evolution. 42: 298-307. PMID 16942891 DOI: 10.1016/J.Ympev.2006.07.006 |
0.568 |
|
| 2006 |
Conant GC, Wolfe KH. Functional partitioning of yeast co-expression networks after genome duplication. Plos Biology. 4: e109. PMID 16555924 DOI: 10.1371/Journal.Pbio.0040109 |
0.589 |
|
| 2005 |
Conant GC, Wagner A. The rarity of gene shuffling in conserved genes. Genome Biology. 6: R50. PMID 15960802 DOI: 10.1186/Gb-2005-6-6-R50 |
0.471 |
|
| 2004 |
Conant GC, Wagner A. A fast algorithm for determining the best combination of local alignments to a query sequence. Bmc Bioinformatics. 5: 62. PMID 15149555 DOI: 10.1186/1471-2105-5-62 |
0.355 |
|
| 2004 |
Hahn MW, Conant GC, Wagner A. Molecular evolution in large genetic networks: does connectivity equal constraint? Journal of Molecular Evolution. 58: 203-11. PMID 15042341 DOI: 10.1007/S00239-003-2544-0 |
0.476 |
|
| 2004 |
Conant GC, Wagner A. Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans. Proceedings. Biological Sciences. 271: 89-96. PMID 15002776 DOI: 10.1098/Rspb.2003.2560 |
0.484 |
|
| 2003 |
Conant GC, Wagner A. Asymmetric sequence divergence of duplicate genes. Genome Research. 13: 2052-8. PMID 12952876 DOI: 10.1101/Gr.1252603 |
0.496 |
|
| 2003 |
Conant GC, Wagner A. Convergent evolution of gene circuits. Nature Genetics. 34: 264-6. PMID 12819781 DOI: 10.1038/Ng1181 |
0.442 |
|
| 2003 |
Conant GC, Plimpton SJ, Old W, Wagner A, Fain PR, Pacheco TR, Heffelfinger G. Parallel Genehunter: implementation of a linkage analysis package for distributed-memory architectures Journal of Parallel and Distributed Computing. 63: 674-682. DOI: 10.1016/S0743-7315(03)00080-7 |
0.314 |
|
| 2002 |
Conant GC, Wagner A. GenomeHistory: a software tool and its application to fully sequenced genomes. Nucleic Acids Research. 30: 3378-86. PMID 12140322 DOI: 10.1093/Nar/Gkf449 |
0.503 |
|
| 2001 |
Conant GC, Lewis PO. Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference. Molecular Biology and Evolution. 18: 1024-33. PMID 11371591 DOI: 10.1093/Oxfordjournals.Molbev.A003874 |
0.513 |
|
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