Pawel Gajer - Publications

Affiliations: 
2000-2004 Bioinformatics The Institute for Genomic Research 

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 France MT, Fu L, Rutt L, Yang H, Humphrys MS, Narina S, Gajer PM, Ma B, Forney LJ, Ravel J. Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data. Genome Biology. 23: 66. PMID 35232471 DOI: 10.1186/s13059-022-02635-9  0.317
2019 Tamarelle J, Ma B, Gajer P, Humphrys MS, Terplan M, Mark KS, Thiébaut ACM, Forney LJ, Brotman RM, Delarocque-Astagneau E, Bavoil PM, Ravel J. Non-optimal vaginal microbiota after azithromycin treatment for Chlamydia trachomatis infection. The Journal of Infectious Diseases. PMID 31573603 DOI: 10.1093/Infdis/Jiz499  0.389
2019 Edwards VL, Smith SB, McComb EJ, Tamarelle J, Ma B, Humphrys MS, Gajer P, Gwilliam K, Schaefer AM, Lai SK, Terplan M, Mark KS, Brotman RM, Forney LJ, Bavoil PM, et al. The Cervicovaginal Microbiota-Host Interaction Modulates Chlamydia trachomatis Infection. Mbio. 10. PMID 31409678 DOI: 10.1128/Mbio.01548-19  0.355
2019 Thurman AR, Schwartz JL, Ravel J, Gajer P, Marzinke MA, Yousefieh N, Anderson SM, Doncel GF. Vaginal microbiota and mucosal pharmacokinetics of tenofovir in healthy women using tenofovir and tenofovir/levonorgestrel vaginal rings. Plos One. 14: e0217229. PMID 31107913 DOI: 10.1371/Journal.Pone.0217229  0.359
2019 Elovitz MA, Gajer P, Riis V, Brown AG, Humphrys MS, Holm JB, Ravel J. Cervicovaginal microbiota and local immune response modulate the risk of spontaneous preterm delivery. Nature Communications. 10: 1305. PMID 30899005 DOI: 10.1038/S41467-019-09285-9  0.386
2019 Tuddenham S, Ghanem K, Gajer P, Robinson C, Ravel J, Brotman R. P591 The effect of hormonal contraception on the vaginal microbiota over 2 years Sexually Transmitted Infections. 95. DOI: 10.1136/Sextrans-2019-Sti.662  0.402
2018 Ma B, McComb E, Gajer P, Yang H, Humphrys M, Okogbule-Wonodi AC, Fasano A, Ravel J, Viscardi RM. Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants. Frontiers in Microbiology. 9: 2755. PMID 30487786 DOI: 10.3389/Fmicb.2018.02755  0.319
2018 Joag V, Obila O, Gajer P, Scott MC, Dizzell S, Humphrys M, Shahabi K, Huibner S, Shannon B, Tharao W, Mureithi M, Oyugi J, Kimani J, Kaushic C, Ravel J, et al. Impact of Standard Bacterial Vaginosis Treatment on the Genital Microbiota, Immune Milieu, and Ex Vivo Human Immunodeficiency Virus Susceptibility. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 30407498 DOI: 10.1093/Cid/Ciy762  0.354
2018 Dausset C, Patrier S, Gajer P, Thoral C, Lenglet Y, Cardot JM, Judlin P, Ravel J, Nivoliez A. Comparative phase I randomized open-label pilot clinical trial of Gynophilus (Lcr regenerans) immediate release capsules versus slow release muco-adhesive tablets. European Journal of Clinical Microbiology & Infectious Diseases : Official Publication of the European Society of Clinical Microbiology. 37: 1869-1880. PMID 30032443 DOI: 10.1007/S10096-018-3321-8  0.309
2018 Girard L, Birse K, Holm JB, Gajer P, Humphrys MS, Garber D, Guenthner P, Noël-Romas L, Abou M, McCorrister S, Westmacott G, Wang L, Rohan LC, Matoba N, McNicholl J, et al. Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates. Scientific Reports. 8: 8059. PMID 29795295 DOI: 10.1038/S41598-018-26313-8  0.308
2017 Wee BA, Thomas M, Sweeney EL, Frentiu FD, Samios M, Ravel J, Gajer P, Myers G, Timms P, Allan JA, Huston WM. A retrospective pilot study to determine whether the reproductive tract microbiota differs between women with a history of infertility and fertile women. The Australian & New Zealand Journal of Obstetrics & Gynaecology. PMID 29280134 DOI: 10.1111/Ajo.12754  0.361
2017 Shannon B, Gajer P, Yi TJ, Ma B, Humphrys MS, Thomas-Pavanel J, Chieza L, Janakiram P, Saunders M, Tharao W, Huibner S, Shahabi K, Ravel J, Kaul R. Distinct effects of the cervico-vaginal microbiota and herpes simplex type 2 infection on female genital tract immunology. The Journal of Infectious Diseases. PMID 28201724 DOI: 10.1093/Infdis/Jix088  0.385
2017 Shannon B, Yi TJ, Perusini S, Gajer P, Ma B, Humphrys MS, Thomas-Pavanel J, Chieza L, Janakiram P, Saunders M, Tharao W, Huibner S, Shahabi K, Ravel J, Rebbapragada A, et al. Association of HPV infection and clearance with cervicovaginal immunology and the vaginal microbiota. Mucosal Immunology. PMID 28120845 DOI: 10.1038/Mi.2016.129  0.324
2017 Holm JC, Gajer P, Chatterjee A, Humphrys M, Ravel J, Brotman R. O10.4 Concordance between random catch urine and mid-vaginal microbiota Sexually Transmitted Infections. 93. DOI: 10.1136/Sextrans-2017-053264.58  0.353
2017 Smith S, Humphrys M, Gajer P, Iqbal S, Edwards V, Ravel J. P1.53 Microrna expression induced by vaginal microbiota controls cell proliferation Sexually Transmitted Infections. 93. DOI: 10.1136/Sextrans-2017-053264.158  0.308
2017 R B, Gajer P, Jb H, Cr R, Jones D, Chatterjee A, Humphrys M, Lj F, Ravel J, Kg G. P1.21 Comparison of shipped versus freshly frozen self-collected vaginal samples for microbiota assessment Sexually Transmitted Infections. 93. DOI: 10.1136/Sextrans-2017-053264.129  0.334
2017 Elovitz M, Gajer P, Downes K, Ravel J. 10: Distinct microbiota in the cervicovaginal space are associated with spontaneous preterm birth: findings from a large cohort and validation study American Journal of Obstetrics and Gynecology. 216. DOI: 10.1016/J.Ajog.2016.11.900  0.3
2017 Downes KL, Gajer P, Ravel J, Elovitz MA. 359: Integrating low and high risk cervicovaginal microbiota with antimicrobial peptides may identify those women at greatest risk for spontaneous preterm birth American Journal of Obstetrics and Gynecology. 216. DOI: 10.1016/J.Ajog.2016.11.617  0.324
2015 Dareng EO, Ma B, Famooto AO, Akarolo-Anthony SN, Offiong RA, Olaniyan O, Dakum PS, Wheeler CM, Fadrosh D, Yang H, Gajer P, Brotman RM, Ravel J, Adebamowo CA. Prevalent high-risk HPV infection and vaginal microbiota in Nigerian women. Epidemiology and Infection. 1-15. PMID 26062721 DOI: 10.1017/S0950268815000965  0.407
2015 Neuendorf E, Gajer P, Bowlin AK, Marques PX, Ma B, Yang H, Fu L, Humphrys MS, Forney LJ, Myers GS, Bavoil PM, Rank RG, Ravel J. Chlamydia caviae infection alters abundance but not composition of the guinea pig vaginal microbiota. Pathogens and Disease. 73. PMID 25761873 DOI: 10.1093/Femspd/Ftv019  0.322
2015 Mehta SD, Donovan B, Weber KM, Cohen M, Ravel J, Gajer P, Gilbert D, Burgad D, Spear GT. The vaginal microbiota over an 8- to 10-year period in a cohort of HIV-infected and HIV-uninfected women. Plos One. 10: e0116894. PMID 25675346 DOI: 10.1371/Journal.Pone.0116894  0.334
2015 Ma B, Gajer P, Humphrys M, Yang H, Fu L, Terplan M, Bavoil P, Forney L, Ravel J. P06.06 Azythromycin treatment forchlamydia trachomatisis associated with vaginal microbiota lacking protectivelactobacillusspp Sexually Transmitted Infections. 91: A116.2-A116. DOI: 10.1136/Sextrans-2015-052270.307  0.399
2015 Nelson T, Borgogna J, Roberts D, Michalek R, Gajer P, Ravel J, Yeoman C, Brotman R. O13.6 Cigarette smoking is associated with an altered metabolic profile in the vaginal tract Sexually Transmitted Infections. 91: A55.1-A55. DOI: 10.1136/Sextrans-2015-052270.152  0.317
2015 Tuddenham S, Rovner A, Ma B, Robinson C, Gajer P, Ravel J, Ghanem K, Brotman R. O13.5 Association between dietary intake and dysbiotic vaginal microbiota Sexually Transmitted Infections. 91: A54.2-A55. DOI: 10.1136/Sextrans-2015-052270.151  0.369
2014 Sivapalasingam S, McClelland RS, Ravel J, Ahmed A, Cleland CM, Gajer P, Mwamzaka M, Marshed F, Shafi J, Masese L, Fajans M, Anderson ME, Jaoko W, Kurth AE. An effective intervention to reduce intravaginal practices among HIV-1 uninfected Kenyan women. Aids Research and Human Retroviruses. 30: 1046-54. PMID 25265254 DOI: 10.1089/Aid.2013.0251  0.364
2014 Romero R, Hassan SS, Gajer P, Tarca AL, Fadrosh DW, Bieda J, Chaemsaithong P, Miranda J, Chaiworapongsa T, Ravel J. The vaginal microbiota of pregnant women who subsequently have spontaneous preterm labor and delivery and those with a normal delivery at term. Microbiome. 2: 18. PMID 24987521 DOI: 10.1186/2049-2618-2-18  0.419
2014 Romero R, Hassan SS, Gajer P, Tarca AL, Fadrosh DW, Nikita L, Galuppi M, Lamont RF, Chaemsaithong P, Miranda J, Chaiworapongsa T, Ravel J. Correction: The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women. Microbiome. 2: 10. PMID 24735933 DOI: 10.1186/2049-2618-2-10  0.368
2014 Romero R, Hassan SS, Gajer P, Tarca AL, Fadrosh DW, Nikita L, Galuppi M, Lamont RF, Chaemsaithong P, Miranda J, Chaiworapongsa T, Ravel J. The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women. Microbiome. 2: 4. PMID 24484853 DOI: 10.1186/2049-2618-2-4  0.423
2014 Brotman RM, Shardell MD, Gajer P, Fadrosh D, Chang K, Silver MI, Viscidi RP, Burke AE, Ravel J, Gravitt PE. Association between the vaginal microbiota, menopause status, and signs of vulvovaginal atrophy. Menopause (New York, N.Y.). 21: 450-8. PMID 24080849 DOI: 10.1097/Gme.0B013E3182A4690B  0.399
2014 Elovitz M, Gajer P, Bastek J, Anglim L, Brown A, Ravel J. 26: The cervicovaginal microbiota is different in women destined to have a preterm birth American Journal of Obstetrics and Gynecology. 210. DOI: 10.1016/J.Ajog.2013.10.059  0.374
2013 Ravel J, Brotman RM, Gajer P, Ma B, Nandy M, Fadrosh DW, Sakamoto J, Koenig SS, Fu L, Zhou X, Hickey RJ, Schwebke JR, Forney LJ. Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis. Microbiome. 1: 29. PMID 24451163 DOI: 10.1186/2049-2618-1-29  0.397
2013 Dareng EO, Famooto AO, Ogbonna CC, Akarolo-Anthony S, Al-Mujtaba M, Odonye G, Olaniyan OB, Offiong R, Lawal I, Gajer P, Fadrosh D, Yang H, Ravel J, Adebamowo C. Abstract 2588: Increased risk of prevalent high risk human papillomavirus infection inLactobacillus inersrich microbiota in Nigerian women. Cancer Research. 73: 2588-2588. DOI: 10.1158/1538-7445.Am2013-2588  0.398
2013 Brotman RM, Ravel J, Gajer P, Fadrosh D, Mongodin EF, Glover ED, Rath JM. P1.034 Biomarkers of Cigarette Smoking and Association with the Vaginal Microbiota Sexually Transmitted Infections. 89: A84.2-A84. DOI: 10.1136/Sextrans-2013-051184.0255  0.347
2013 Brotman RM, Schwartz JA, Gajer P, Ravel J, Bruno VM. P1.030 A Molecular Study of Vaginal Bacterial Communities and Candida Albicans Detection Sexually Transmitted Infections. 89: A83.1-A83. DOI: 10.1136/Sextrans-2013-051184.0251  0.435
2013 Ma B, Brotman RM, Gajer P, Fadrosh D, Mahurkar A, White O, Terplan M, Bavoil P, Forney LJ, Ravel J. O05.4 Association Between Chlamydia Trachomatis Genital Infection and the Vaginal Microbiome Sexually Transmitted Infections. 89: A35.2-A35. DOI: 10.1136/Sextrans-2013-051184.0110  0.394
2012 Flores R, Shi J, Fuhrman B, Xu X, Veenstra TD, Gail MH, Gajer P, Ravel J, Goedert JJ. Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study. Journal of Translational Medicine. 10: 253. PMID 23259758 DOI: 10.1186/1479-5876-10-253  0.308
2012 Ravel J, Gajer P, Fu L, Mauck CK, Koenig SS, Sakamoto J, Motsinger-Reif AA, Doncel GF, Zeichner SL. Twice-daily application of HIV microbicides alter the vaginal microbiota. Mbio. 3. PMID 23249810 DOI: 10.1128/Mbio.00370-12  0.343
2012 Brotman RM, Bradford LL, Conrad M, Gajer P, Ault K, Peralta L, Forney LJ, Carlton JM, Abdo Z, Ravel J. Association between Trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women. Sexually Transmitted Diseases. 39: 807-12. PMID 23007708 DOI: 10.1097/Olq.0B013E3182631C79  0.403
2012 Bai G, Gajer P, Nandy M, Ma B, Yang H, Sakamoto J, Blanchard MH, Ravel J, Brotman RM. Comparison of storage conditions for human vaginal microbiome studies. Plos One. 7: e36934. PMID 22655031 DOI: 10.1371/Journal.Pone.0036934  0.309
2012 Gajer P, Brotman RM, Bai G, Sakamoto J, Schütte UM, Zhong X, Koenig SS, Fu L, Ma ZS, Zhou X, Abdo Z, Forney LJ, Ravel J. Temporal dynamics of the human vaginal microbiota. Science Translational Medicine. 4: 132ra52. PMID 22553250 DOI: 10.1126/Scitranslmed.3003605  0.39
2012 Flores R, Shi J, Gail MH, Gajer P, Ravel J, Goedert JJ. Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences. European Journal of Clinical Investigation. 42: 855-63. PMID 22385292 DOI: 10.1111/J.1365-2362.2012.02659.X  0.324
2011 Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Gorle R, Russell J, Tacket CO, Brotman RM, Davis CC, Ault K, Peralta L, Forney LJ. Vaginal microbiome of reproductive-age women. Proceedings of the National Academy of Sciences of the United States of America. 108: 4680-7. PMID 20534435 DOI: 10.1073/Pnas.1002611107  0.4
2011 Brotman R, Jones LL, Sakamoto J, Gajer P, Ault K, Peralta L, Forney L, Abdo Z, Ravel J. O1-S05.05 Association between Trichomonas vaginalis and vaginal bacterial community composition among asymptomatic reproductive-age women in the USA Sexually Transmitted Infections. 87: A33-A34. DOI: 10.1136/Sextrans-2011-050109.29  0.404
2011 Ravel J, Brotman R, Gajer P, Sakamoto J, Koenig S, Fu L, Zhou X, Abdo Z, Forney L, Ravel J. P4-S4.04 Temporal dynamics of vaginal bacterial communities Sexually Transmitted Infections. 87: A316-A317. DOI: 10.1136/Sextrans-2011-050108.529  0.401
2010 Zhou X, Brotman RM, Gajer P, Abdo Z, Schüette U, Ma S, Ravel J, Forney LJ. Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth. Infectious Diseases in Obstetrics and Gynecology. 2010: 737425. PMID 21197076 DOI: 10.1155/2010/737425  0.352
2010 Schatz MC, Phillippy AM, Gajer P, DeSantis TZ, Andersen GL, Ravel J. Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray. Applied and Environmental Microbiology. 76: 5636-8. PMID 20581189 DOI: 10.1128/Aem.00303-10  0.302
2010 Forney LJ, Gajer P, Williams CJ, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Brotman RM, Davis CC, Ault K, Ravel J. Comparison of self-collected and physician-collected vaginal swabs for microbiome analysis. Journal of Clinical Microbiology. 48: 1741-8. PMID 20200290 DOI: 10.1128/Jcm.01710-09  0.361
2004 Gajer P, Schatz M, Salzberg SL. Automated correction of genome sequence errors. Nucleic Acids Research. 32: 562-9. PMID 14744981 DOI: 10.1093/Nar/Gkh216  0.464
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