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Nicolas E. Buchler - Publications

Affiliations: 
2009-2018 Biology Duke University, Durham, NC 
 2018- Molecular Biomedical Sciences North Carolina State University, Raleigh, NC 
Area:
biophysics, systems biology, evolution
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Medina EM, Robinson KA, Bellingham-Johnstun K, Ianiri G, Laplante C, Fritz-Laylin LK, Buchler NE. Genetic transformation of , a resource for studying chytrid biology and evolutionary cell biology. Elife. 9. PMID 32392127 DOI: 10.7554/Elife.52741  0.355
2019 Gowans GJ, Bridgers JB, Zhang J, Dronamraju R, Burnetti A, King DA, Thiengmany AV, Shinsky SA, Bhanu NV, Garcia BA, Buchler NE, Strahl BD, Morrison AJ. Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression. Molecular Cell. PMID 31676231 DOI: 10.1016/J.Molcel.2019.09.029  0.767
2019 Gómez-Schiavon M, Buchler NE. Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise. Plos Computational Biology. 15: e1007364. PMID 31658246 DOI: 10.1371/Journal.Pcbi.1007364  0.732
2019 Medina EM, Walsh E, Buchler NE. Evolutionary innovation, fungal cell biology, and the lateral gene transfer of a viral KilA-N domain. Current Opinion in Genetics & Development. 58: 103-110. PMID 31600629 DOI: 10.1016/J.Gde.2019.08.004  0.352
2019 Lin YT, Buchler NE. Exact and efficient hybrid Monte Carlo algorithm for accelerated Bayesian inference of gene expression models from snapshots of single-cell transcripts. The Journal of Chemical Physics. 151: 024106. PMID 31301707 DOI: 10.1063/1.5110503  0.37
2019 Chen LF, Lin YT, Gallegos DA, Hazlett MF, Gómez-Schiavon M, Yang MG, Kalmeta B, Zhou AS, Holtzman L, Gersbach CA, Grandl J, Buchler NE, West AE. Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes. Cell Reports. 26: 1174-1188.e5. PMID 30699347 DOI: 10.1016/J.Celrep.2019.01.032  0.759
2018 Mwimba M, Karapetyan S, Liu L, Marqués J, McGinnis EM, Buchler NE, Dong X. Daily humidity oscillation regulates the circadian clock to influence plant physiology. Nature Communications. 9: 4290. PMID 30327472 DOI: 10.1038/S41467-018-06692-2  0.67
2018 Lin YT, Buchler NE. Efficient analysis of stochastic gene dynamics in the non-adiabatic regime using piecewise deterministic Markov processes. Journal of the Royal Society, Interface. 15. PMID 29386401 DOI: 10.1098/Rsif.2017.0804  0.416
2017 Gómez-Schiavon M, Chen LF, West AE, Buchler NE. BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells. Genome Biology. 18: 164. PMID 28870226 DOI: 10.1186/S13059-017-1297-9  0.757
2017 Hendler A, Medina EM, Buchler NE, de Bruin RAM, Aharoni A. The evolution of a G1/S transcriptional network in yeasts. Current Genetics. PMID 28744706 DOI: 10.1007/S00294-017-0726-3  0.367
2017 Hendler A, Medina EM, Kishkevich A, Abu-Qarn M, Klier S, Buchler NE, de Bruin RAM, Aharoni A. Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness. Plos Genetics. 13: e1006778. PMID 28505153 DOI: 10.1371/Journal.Pgen.1006778  0.375
2017 Liban TJ, Medina EM, Tripathi S, Sengupta S, Henry RW, Buchler NE, Rubin SM. Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family. Proceedings of the National Academy of Sciences of the United States of America. PMID 28439018 DOI: 10.1073/Pnas.1619170114  0.309
2017 Tanouchi Y, Pai A, Park H, Huang S, Buchler NE, You L. Long-term growth data of Escherichia coli at a single-cell level. Scientific Data. 4: 170036. PMID 28350394 DOI: 10.1038/Sdata.2017.36  0.751
2016 Medina EM, Turner JJ, Gordân R, Skotheim JM, Buchler NE. Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi. Elife. 5. PMID 27162172 DOI: 10.7554/Elife.09492  0.423
2015 Karapetyan S, Buchler NE. Role of DNA binding sites and slow unbinding kinetics in titration-based oscillators. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 062712. PMID 26764732 DOI: 10.1103/Physreve.92.062712  0.677
2015 Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, et al. The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-component and Metazoan-type Tyrosine Kinase Signaling. Genome Biology and Evolution. PMID 26615215 DOI: 10.1093/Gbe/Evv237  0.564
2015 Burnetti AJ, Aydin M, Buchler NE. Cell cycle Start is coupled to entry into the yeast metabolic cycle across diverse strains and growth rates. Molecular Biology of the Cell. PMID 26538026 DOI: 10.1091/Mbc.E15-07-0454  0.75
2015 Rienzo A, Poveda-Huertes D, Aydin S, Buchler NE, Pascual-Ahuir A, Proft M. Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast. Molecular and Cellular Biology. 35: 3669-83. PMID 26283730 DOI: 10.1128/Mcb.00729-15  0.684
2015 Zhou M, Wang W, Karapetyan S, Mwimba M, Marqués J, Buchler NE, Dong X. Redox rhythm reinforces the circadian clock to gate immune response. Nature. 523: 472-6. PMID 26098366 DOI: 10.1038/Nature14449  0.696
2015 Tanouchi Y, Pai A, Park H, Huang S, Stamatov R, Buchler NE, You L. A noisy linear map underlies oscillations in cell size and gene expression in bacteria. Nature. 523: 357-60. PMID 26040722 DOI: 10.1038/Nature14562  0.76
2014 Mazo-Vargas A, Park H, Aydin M, Buchler NE. Measuring fast gene dynamics in single cells with time-lapse luminescence microscopy. Molecular Biology of the Cell. 25: 3699-708. PMID 25232010 DOI: 10.1091/Mbc.E14-07-1187  0.774
2014 Mazo-Vargas A, Park H, Aydin M, Buchler NE. Multicolor Timelapse Luminescence Microscopy: Optimizing Luciferases to Track Fast Gene Dynamics in Single Yeast Cells Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2109  0.777
2011 Cross FR, Buchler NE, Skotheim JM. Evolution of networks and sequences in eukaryotic cell cycle control. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 366: 3532-44. PMID 22084380 DOI: 10.1098/Rstb.2011.0078  0.579
2009 Buchler NE, Cross FR. Protein sequestration generates a flexible ultrasensitive response in a genetic network. Molecular Systems Biology. 5: 272. PMID 19455136 DOI: 10.1038/Msb.2009.30  0.593
2008 Buchler NE, Louis M. Molecular titration and ultrasensitivity in regulatory networks. Journal of Molecular Biology. 384: 1106-19. PMID 18938177 DOI: 10.1016/J.Jmb.2008.09.079  0.396
2007 Fritz G, Buchler NE, Hwa T, Gerland U. Designing sequential transcription logic: a simple genetic circuit for conditional memory. Systems and Synthetic Biology. 1: 89-98. PMID 19003438 DOI: 10.1007/S11693-007-9006-8  0.701
2005 Buchler NE, Gerland U, Hwa T. Nonlinear protein degradation and the function of genetic circuits. Proceedings of the National Academy of Sciences of the United States of America. 102: 9559-64. PMID 15972813 DOI: 10.1073/Pnas.0409553102  0.68
2005 Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Kuhlman T, Phillips R. Transcriptional regulation by the numbers: applications. Current Opinion in Genetics & Development. 15: 125-35. PMID 15797195 DOI: 10.1016/J.Gde.2005.02.006  0.769
2005 Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Phillips R. Transcriptional regulation by the numbers: models. Current Opinion in Genetics & Development. 15: 116-24. PMID 15797194 DOI: 10.1016/J.Gde.2005.02.007  0.624
2005 Archambault V, Buchler NE, Wilmes GM, Jacobson MD, Cross FR. Two-faced cyclins with eyes on the targets. Cell Cycle (Georgetown, Tex.). 4: 125-30. PMID 15611618 DOI: 10.4161/Cc.4.1.1402  0.544
2003 Buchler NE, Gerland U, Hwa T. On schemes of combinatorial transcription logic. Proceedings of the National Academy of Sciences of the United States of America. 100: 5136-41. PMID 12702751 DOI: 10.1073/Pnas.0930314100  0.627
1999 Buchler NE, Goldstein RA. Effect of alphabet size and foldability requirements on protein structure designability. Proteins. 34: 113-24. PMID 10336377 DOI: 10.1002/(Sici)1097-0134(19990101)34:1<113::Aid-Prot9>3.0.Co;2-J  0.391
1997 Buchler NE, Zuiderweg ER, Wang H, Goldstein RA. Protein heteronuclear NMR assignments using mean-field simulated annealing. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 125: 34-42. PMID 9245358 DOI: 10.1006/Jmre.1997.1106  0.371
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